TCONS_00002168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002168
Unique NameTCONS_00002168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002168 ID=TCONS_00002168|Name=TCONS_00002168|organism=Clytia hemisphaerica|type=transcript|length=199bp
CGCTCATTGAAACATCATTTACGCCCGCTTAAAACGTCTGTATAATTCGG
TTATCGTTCAAAAGTTTGGTTCATCCACCAAAGAAGCGTTGAAAGAGTTA
CGGCAAAAGACGGCAGGTTTTATGCGAACGAATGAAGATGACTTTCTTCC
TTTCACCTCCAACACGAAAACCGGTGACATCCTTAGCACTGGTGAGTTT
Run BLAST on NCBI

transcript from alignment at sc0000018:858192..860931-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002168 ID=TCONS_00002168|Name=TCONS_00002168|organism=Clytia hemisphaerica|type=transcript|length=2740bp|location=Sequence derived from alignment at sc0000018:858192..860931- (Clytia hemisphaerica)
CGCTCATTGAAACATCATTTACGCCCGCTTAAAACGGTAAAATGAATAAC GATTCAGGTTTTTTTGGAGAAGAAGTCGCTGCAGTGTCAGTCTTTCGCGA AATGAAAAACCCACTTTACCGTGGAAATAATCGACGTTTTTTGTTTTGTT TTTTTGGGAACCTTTGAACATAAGGTACCCGTTTACCGCAAAAGTTAAGG GTAATTAGGAGATCCAATGACGTTTTTTCAGATTTTTGAAAAACTTTAAA CTGCGATATCTCGAGTTTGAAAGGTAGGTAGGAGGTCGTCGACCCTTCAT TGGGTCGAAGACTTTAATATTATAACTTTGCGTTTTCAGCACCTTGACGT TTTGAGTTTTAAACCATTTTAAGTGGTAATCTTTCGTTTTTCGGCTTATG AATCCGAGTTTTTGACCATTTACTATCAAAAGGGCTATTCAGCTTCACCC ATTTTTTTTTTTTTTTTCATTTAATGACAGCTATCACTAGGAGCATTGTG TGCGTTCAGCAATACTTGACCGGCGTTTGCAACGACGAGAACCGTCTAAA TTGTATTCTAGAGATACTTGAAAATATACCGGGTGACCCAAAGTTCGGAC GGTTTTCGTTGGGTAGGGTCTGAAATAAAAGTAATTTAAAAGATAGAGGA TGCTCTAACTTAAACTTTGAGCTATTACTTTTTAAATTTTGTTCAGTGGT TCTTCATTTATGAGCTTTTAAAGTCAAAATTCAATTATTGGAAAGTGAAA AAACACGTCAATTATATTTCTTTATCTTTAACATTGTGTTTTTCGAGTGT GCTGATGTTTTACAACCTCGTTAATTAGTGTTGTAGGTAATTAAAGTTTA TAAAATAATAAATTAACAACGAAGTAGATTTATATAAATTTACTGTAAAT ATTTTTATCAAAATATTTTGCAAATAGGCAAAATTTGCTTTCTTTATGAA AATGTCGCGTCTTATGAAAGAACAGAGAGTGTGGGTTTGCCTGGAATATG CTAGAAAGTGCATGGTGGTGGTTCTTTTCTGAACGCATAACTTGTTAATA GATTTTGTGAAAGTAAAGAATCTAAAAAAAGTTTTAAAATTGAATAAAAA TATCTAACATGCTCTTTTCTAACGATTTAACGACCTTGCTTGATTGATTG ATAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAA ATCTTTTAAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGA CAATTCACTCTTTAATTTTTCATTTCCATCTCGTTTTCTCTGATTTCAGT CTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTAAG TTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTTTTA CCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGGGTA CTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAGATT TCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTTTTC TTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAAAAG ACGGCAGGTTTTATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTC CAACACGAAAACCGGTGACATCCTTAGCACTGGTGAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001130XLOC_001130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002168-exon-sc0000018-1575043694:860896..860931TCONS_00002168-exon-sc0000018-1575043694:860896..860931Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1575043694:858537..858582TCONS_00002168-exon-sc0000018-1575043694:858537..858582Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1575043694:858192..858308TCONS_00002168-exon-sc0000018-1575043694:858192..858308Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1510915933:860896..860931TCONS_00002168-exon-sc0000018-1510915933:860896..860931Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1510915933:858537..858582TCONS_00002168-exon-sc0000018-1510915933:858537..858582Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1510915933:858192..858308TCONS_00002168-exon-sc0000018-1510915933:858192..858308Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1491911889:860896..860931TCONS_00002168-exon-sc0000018-1491911889:860896..860931Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1491911889:858537..858582TCONS_00002168-exon-sc0000018-1491911889:858537..858582Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1491911889:858192..858308TCONS_00002168-exon-sc0000018-1491911889:858192..858308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:858192..860931 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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