TCONS_00002168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002168
Unique NameTCONS_00002168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002168 ID=TCONS_00002168|Name=TCONS_00002168|organism=Clytia hemisphaerica|type=transcript|length=199bp
CGCTCATTGAAACATCATTTACGCCCGCTTAAAACGTCTGTATAATTCGG
TTATCGTTCAAAAGTTTGGTTCATCCACCAAAGAAGCGTTGAAAGAGTTA
CGGCAAAAGACGGCAGGTTTTATGCGAACGAATGAAGATGACTTTCTTCC
TTTCACCTCCAACACGAAAACCGGTGACATCCTTAGCACTGGTGAGTTT
Run BLAST on NCBI

transcript from alignment at sc0000018:858192..860931-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002168 ID=TCONS_00002168|Name=TCONS_00002168|organism=Clytia hemisphaerica|type=transcript|length=2740bp|location=Sequence derived from alignment at sc0000018:858192..860931- (Clytia hemisphaerica)
CGCTCATTGAAACATCATTTACGCCCGCTTAAAACGGTAAAATGAATAAC
GATTCAGGTTTTTTTGGAGAAGAAGTCGCTGCAGTGTCAGTCTTTCGCGA
AATGAAAAACCCACTTTACCGTGGAAATAATCGACGTTTTTTGTTTTGTT
TTTTTGGGAACCTTTGAACATAAGGTACCCGTTTACCGCAAAAGTTAAGG
GTAATTAGGAGATCCAATGACGTTTTTTCAGATTTTTGAAAAACTTTAAA
CTGCGATATCTCGAGTTTGAAAGGTAGGTAGGAGGTCGTCGACCCTTCAT
TGGGTCGAAGACTTTAATATTATAACTTTGCGTTTTCAGCACCTTGACGT
TTTGAGTTTTAAACCATTTTAAGTGGTAATCTTTCGTTTTTCGGCTTATG
AATCCGAGTTTTTGACCATTTACTATCAAAAGGGCTATTCAGCTTCACCC
ATTTTTTTTTTTTTTTTCATTTAATGACAGCTATCACTAGGAGCATTGTG
TGCGTTCAGCAATACTTGACCGGCGTTTGCAACGACGAGAACCGTCTAAA
TTGTATTCTAGAGATACTTGAAAATATACCGGGTGACCCAAAGTTCGGAC
GGTTTTCGTTGGGTAGGGTCTGAAATAAAAGTAATTTAAAAGATAGAGGA
TGCTCTAACTTAAACTTTGAGCTATTACTTTTTAAATTTTGTTCAGTGGT
TCTTCATTTATGAGCTTTTAAAGTCAAAATTCAATTATTGGAAAGTGAAA
AAACACGTCAATTATATTTCTTTATCTTTAACATTGTGTTTTTCGAGTGT
GCTGATGTTTTACAACCTCGTTAATTAGTGTTGTAGGTAATTAAAGTTTA
TAAAATAATAAATTAACAACGAAGTAGATTTATATAAATTTACTGTAAAT
ATTTTTATCAAAATATTTTGCAAATAGGCAAAATTTGCTTTCTTTATGAA
AATGTCGCGTCTTATGAAAGAACAGAGAGTGTGGGTTTGCCTGGAATATG
CTAGAAAGTGCATGGTGGTGGTTCTTTTCTGAACGCATAACTTGTTAATA
GATTTTGTGAAAGTAAAGAATCTAAAAAAAGTTTTAAAATTGAATAAAAA
TATCTAACATGCTCTTTTCTAACGATTTAACGACCTTGCTTGATTGATTG
ATAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATCTTTTAAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGA
CAATTCACTCTTTAATTTTTCATTTCCATCTCGTTTTCTCTGATTTCAGT
CTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTAAG
TTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTTTTA
CCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGGGTA
CTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAGATT
TCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTTTTC
TTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAAAAG
ACGGCAGGTTTTATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTC
CAACACGAAAACCGGTGACATCCTTAGCACTGGTGAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001130XLOC_001130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002168-exon-sc0000018-1575043694:860896..860931TCONS_00002168-exon-sc0000018-1575043694:860896..860931Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1575043694:858537..858582TCONS_00002168-exon-sc0000018-1575043694:858537..858582Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1575043694:858192..858308TCONS_00002168-exon-sc0000018-1575043694:858192..858308Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1510915933:860896..860931TCONS_00002168-exon-sc0000018-1510915933:860896..860931Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1510915933:858537..858582TCONS_00002168-exon-sc0000018-1510915933:858537..858582Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1510915933:858192..858308TCONS_00002168-exon-sc0000018-1510915933:858192..858308Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1491911889:860896..860931TCONS_00002168-exon-sc0000018-1491911889:860896..860931Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1491911889:858537..858582TCONS_00002168-exon-sc0000018-1491911889:858537..858582Clytia hemisphaericaexon
TCONS_00002168-exon-sc0000018-1491911889:858192..858308TCONS_00002168-exon-sc0000018-1491911889:858192..858308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:858192..860931 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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