Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002161
Unique NameTCONS_00002161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002161 ID=TCONS_00002161|Name=TCONS_00002161|organism=Clytia hemisphaerica|type=transcript|length=1932bp
TTAAGACATACAAAAATACCATGCCTTGGACGCCAATAACAACGCCGAAC
GAACTAGACCATGAGTTTTGGAAGAGTCTCAACCTAAGTACAGATTCCAT
GGATAAATGGGTGCAAAATGTGAATGTCCTCACTTTGGATGAAAAGGTGA
AAGAAATGTTGAATTCTACTGACCAGGATGTTGGTGACGATGGCCATGTT
GAAGTTATGAAGATCGTGTTTATGATCGATGCTTCAATTAACATTCTCCT
CAATGTCTTGCTTTTCACCTTTCTCGTCAAATACATGGCACGTCTCAAAT
CGAAACACGTCGCAAAATGTTTCATGAATCTTCAACTTTCCCATCTCTTA
TTCGGTGTTCTTCTCATCGTCGGTCAGCTCGTTAACCATCGATATCTTCA
ATTAATCACTTTCGGGATCGTCCTTCAAATGTTCTTTGCAATGATGTTGA
AAACTTTGGATCAGTTCATCATTATCAAATACCCTTATCGGTATCAACGC
ATTCAAACAAGAGATTTGATGTTCATGATGTTGGCAACTTGGCTTCTAAC
CACTTTCATTATTCTCATTATCATGTTCGTCGCCGACATCTCCAACCGTC
AATTGACCGTCATCTTAACGTTCACAATCATCATCTCCGTTCTAACGTTA
TCCGCATGCAACTTTAGTGTTTACGTTATTGCTCGCCGTCACTACGTTAC
CATACGTGGACAATACAAGAAACGAAGTACGGGACGTATCCCAAAGAAAC
CCTTATTGACTTGTATAGCCATTGTGGCAACGTTCGGCTTACTCTGGCTA
CCATATTTGTTGCATAACGTATTGTTTCTAGGTAACGTGTATGTTGTTGG
AAGGAGCAAGCTGTTCAGTGAGTTAGTGCTTTTTGTAGCATCGTTAAATT
CAATCATTGATCCGGTGATTTTCATTTGGTTCAATAGAGATTTGAAATCT
GAACTTTGGTCCTTTAAAGAGAGGAATTCGACCAGGAGAGTTAAAAGACC
TTCATTGGTCAATAATAATACAGATGGCTCTCTCCTTACAAAGACTGAAA
TTTCATCATGAGAATCATCTCAAATGCTAATAAAAGCCAAATAACTTGCT
TGGCCTTGATCATTATATTTTTCAGGAGATGGCGCGGATTCACAGGTTTT
AAAACTTGAGACCGCGAACCTCCCACCCCTTACACTTGTGTTGtagatta
tttatttttttggataGTATCTGTAATTAAAATTTTGTGACAGGAGACAG
GACTGACTTCACGAAAAGGTTTTTCCcactttttggcaaaatttcatCGA
TCAATAGTCTAGTTCGTATTAGATGAACTGAATCAAATGACGTCTTAAGT
CTCGATTTGTTACTTGTGATTGATTAAAGTTTTAAGACATTTTGGCAAAT
CAAAACATCAAGATCAAGTCCAAAGTCCGTTCTCAAGAAaacaaatattc
aaaaataattattctgtAGCGGAGTCacgtaaaattgaaatttttgaaca
TTTCTGTTCAACTTTCGTGTTTTGTTAATTAAACCTCAGGAATAAAATCA
CTTCTATGGAGTTCTTCCAAAAGGACTACTGTAGACTTTAAACATGccat
gtttgtttatttttcatacaaaaaatttcCCATAGTGATTTTCGAAGATC
ATGTGATCTGAGGTGACCTTGATGGCAAAGATGTAAACAGAAGcaagata
tgaaatgggaaaTATCTAATCTAAAGTTCTTCGCAAAATCTTTACCTAAC
CTAAAAGTCATACCTCTCGACCAATTCTTTCGATCTCCCTTCCCATGTCT
TTCTGACAAAATTACAAGCCCTTAAAGAAGGTTaaataaaagtgactttt
ttGGGTTCGAGGCTTTCAAAtccaactttcttttttttaagattcAGAAA
GGTTGGTAATTTActaccaaaatttcatgtca
Run BLAST on NCBI

protein sequence of TCONS_00002161-protein

>TCONS_00002161-protein ID=TCONS_00002161-protein|Name=TCONS_00002161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
KTYKNTMPWTPITTPNELDHEFWKSLNLSTDSMDKWVQNVNVLTLDEKVK
EMLNSTDQDVGDDGHVEVMKIVFMIDASINILLNVLLFTFLVKYMARLKS
KHVAKCFMNLQLSHLLFGVLLIVGQLVNHRYLQLITFGIVLQMFFAMMLK
TLDQFIIIKYPYRYQRIQTRDLMFMMLATWLLTTFIILIIMFVADISNRQ
LTVILTFTIIISVLTLSACNFSVYVIARRHYVTIRGQYKKRSTGRIPKKP
LLTCIAIVATFGLLWLPYLLHNVLFLGNVYVVGRSKLFSELVLFVASLNS
IIDPVIFIWFNRDLKSELWSFKERNSTRRVKRPSLVNNNTDGSLLTKTEI
SS
Run BLAST on NCBI

transcript from alignment at sc0000018:836223..839456-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002161 ID=TCONS_00002161|Name=TCONS_00002161|organism=Clytia hemisphaerica|type=transcript|length=3234bp|location=Sequence derived from alignment at sc0000018:836223..839456- (Clytia hemisphaerica)
TTAAGACATACAAAAATACCATGCCTTGGACGCCAATAACAACGCCGAAC GAACTAGACCATGAGTTTTGGAAGAGTCTCAACCTAAGTACAGATTCCAT GGATAAATGGGTGCAAAATGTGAATGTCCTCACTTTGGATGAAAAGGTGA AAGAAATGTTGAATTCTACTGACCAGGATGTTGGTGACGATGGCCATGTT GAAGTTATGAAGGTATGTTTACCTTTTGCCATCTTAATTTATTATATGAC ATGAGACATTTCCAAGGTATAGGCCTTTTCACGGCCCATTATTCCTTTCG ACGGTGAAGGTCCTATTATGACAATTATGACACGCACTTTGAGCTGGGCC GTTTTTGTAAATGTAGATTGAGCTTCTAATATGCTTGAAAGGGAATTTGC CCAGCGAAGCTGTACATTGATGTAGCTGCGGGTCTGGTGGGTGTACAGAG GGCGAAGCTCCCGAAAAAATCTTGAATATGTAGATAGTATTAGTTATTTT TTCTTGTAAACAACCAACAAGTTCAATTTTGCTAAAAAATAATAGCTTTC CTATTTTGGATTGAGTTTCAAAAACGTTATTTTGGCCGGACATAAAATAG TGTTTAGAAAAATCCCTGCACACGCACGCTGCAATGCAATTACATTTTCT GACGTCAGTTTCGACAAGTCTGTTTTTATCTGTCAATTTCATTTCATTCA CAACATTCATTTTTAACATTTTATAAAAGGGAAACTTTCGACCATATAAA GCTTAATTTTTGCAGATAAGCGACAACATATTTTTAAATTTACCTGCCTT CTAAAAGATCCAACACGAATTAATTTTCCCTAATTCTTTTCATAGATCGT GTTTATGATCGATGCTTCAATTAACATTCTCCTCAATGTCTTGCTTTTCA CANTCATAGATCGTGTTTATGATCGATGCTTCAATTAACATTCTCCTCAA TGTCTTACTCTTCACCTTTCTCGTCAAATACATGGCACGTCTCAAATCGA AACACGTCGCAAAATGTTTCATGAATCTTCAACTTTCCCATCTCTTATTC GGTGTTCTTCTCATCGTCGGTCAGCTCGTTAACCATCGATATCTTCAATT AATCACTTTCGGGATCGTCCTTCAAATGTTCTTTGCAATGATGTTGAAAA CTTTGGATCAGTTCATCATTATCAAATACCCTTATCGGTGAGTTTATTTC TAGTGACACACAGACTAATTTATATTAAGACTTTTTATCTGTTGCATACC TTACTCAGGAGAATGGCTTGAAATCAGTTGGGTAGCAGTAAAATGGAACG AACTTTTTTCTAGACCATTTATCGCGGTTAAATAGTCTATAGAAAGTCGT TAGGCTAATGCTTATATCAACCTTCTCATTGCTCAGTCAAAGTGTACACT CCTGTATCACAGACCCACTGGGGCCCCAGTCCCACTGGAAAATTTGGCAA AAATTGCGCCGCCGGTGGGAAAATACCCTTAAATTTCAGACCCACTGGGA AATTGACTTTGATTTCGTCCTCATTCGAAATTCAATGTTTAAAACTTGCA CTCCAAAACTATCCCCACTGGGATTTTTAATATTGGAACCTTTTTTTTTT CTATCCCCATTGTGATTTCAATTGGACTTTTTTTCCACACTGGGCTTTGA GACAGGGGTGTAAATGTTGAGTAAGTATCTTGTTTAGCTTGAGTTATATG GAACATGACATGCTATTAAAAGAAGAATGAAACAAGATGATAGAAATGAA TGGAATCTTGTAATTGGAATTGTATCTTTCCATTCCCTTCAGGTATCAAC GCATTCAAACAAGAGATTTGATGTTCATGATGTTGGCAACTTGGCTTCTA ACCACTTTCATTATTCTCATTATCATGTTCGTCGCCGACATCTCCAACCG TCAATTGACCGTCATCTTAACGTTCACAATCATCATCTCCGTTCTAACGT TATCCGCATGCAACTTTAGTGTTTACGTTATTGCTCGCCGTCACTACGTT ACCATACGTGGACAATACAAGAAACGAAGTACGGGACGTATCCCAAAGAA ACCCTTATTGACTTGTATAGCCATTGTGGCAACGTTCGGCTTACTCTGGC TACCATATTTGTTGCATAACGTATTGTTTCTAGGTAACGTGTATGTTGTT GGAAGGAGCAAGCTGTTCAGTGAGTTAGTGCTTTTTGTAGCATCGTTAAA TTCAATCATTGATCCGGTGATTTTCATTTGGTTCAATAGAGATTTGAAAT CTGAACTTTGGTCCTTTAAAGAGAGGAATTCGACCAGGAGAGTTAAAAGA CCTTCATTGGTCAATAATAATACAGATGGCTCTCTCCTTACAAAGACTGA AATTTCATCATGAGAATCATCTCAAATGCTAATAAAAGCCAAATAACTTG CTTGGCCTTGATCATTATATTTTTCAGGAGATGGCGCGGATTCACAGGTT TTAAAACTTGAGACCGCGAACCTCCCACCCCTTACACTTGTGTTGTAGAT TATTTATTTTTTTGGATAGTATCTGTAATTAAAATTTTGTGACAGGAGAC AGGACTGACTTCACGAAAAGGTTTTTCCCACTTTTTGGCAAAATTTCATC GATCAATAGTCTAGTTCGTATTAGATGAACTGAATCAAATGACGTCTTAA GTCTCGATTTGTTACTTGTGATTGATTAAAGTTTTAAGACATTTTGGCAA ATCAAAACATCAAGATCAAGTCCAAAGTCCGTTCTCAAGAAAACAAATAT TCAAAAATAATTATTCTGTAGCGGAGTCACGTAAAATTGAAATTTTTGAA CATTTCTGTTCAACTTTCGTGTTTTGTTAATTAAACCTCAGGAATAAAAT CACTTCTATGGAGTTCTTCCAAAAGGACTACTGTAGACTTTAAACATGCC ATGTTTGTTTATTTTTCATACAAAAAATTTCCCATAGTGATTTTCGAAGA TCATGTGATCTGAGGTGACCTTGATGGCAAAGATGTAAACAGAAGCAAGA TATGAAATGGGAAATATCTAATCTAAAGTTCTTCGCAAAATCTTTACCTA ACCTAAAAGTCATACCTCTCGACCAATTCTTTCGATCTCCCTTCCCATGT CTTTCTGACAAAATTACAAGCCCTTAAAGAAGGTTAAATAAAAGTGACTT TTTTGGGTTCGAGGCTTTCAAATCCAACTTTCTTTTTTTTAAGATTCAGA AAGGTTGGTAATTTACTACCAAAATTTCATGTCA

Coding sequence (CDS) from alignment at sc0000018:836223..839456-

>TCONS_00002161 ID=TCONS_00002161|Name=TCONS_00002161|organism=Clytia hemisphaerica|type=CDS|length=4236bp|location=Sequence derived from alignment at sc0000018:836223..839456- (Clytia hemisphaerica)
GTATCAACGCATTCAAACAAGAGATTTGATGTTCATGATGTTGGCAACTT
GGCTTCTAACCACTTTCATTATTCTCATTATCATGTTCGTCGCCGACATC
TCCAACCGTCAATTGACCGTCATCTTAACGTTCACAATCATCATCTCCGT
TCTAACGTTATCCGCATGCAACTTTAGTGTTTACGTTATTGCTCGCCGTC
ACTACGTTACCATACGTGGACAATACAAGAAACGAAGTACGGGACGTATC
CCAAAGAAACCCTTATTGACTTGTATAGCCATTGTGGCAACGTTCGGCTT
ACTCTGGCTACCATATTTGTTGCATAACGTATTGTTTCTAGGTAACGTGT
ATGTTGTTGGAAGGAGCAAGCTGTTCAGTGAGTTAGTGCTTTTTGTAGCA
TCGTTAAATTCAATCATTGATCCGGTGATTTTCATTTGGTTCAATAGAGA
TTTGAAATCTGAACTTTGGTCCTTTAAAGAGAGGAATTCGACCAGGAGAG
TTAAAAGACCTTCATTGGTCAATAATAATACAGATGGCTCTCTCCTTACA
AAGACTGAAATTTCATCATGACTTTCTCGTCAAATACATGGCACGTCTCA
AATCGAAACACGTCGCAAAATGTTTCATGAATCTTCAACTTTCCCATCTC
TTATTCGGTGTTCTTCTCATCGTCGGTCAGCTCGTTAACCATCGATATCT
TCAATTAATCACTTTCGGGATCGTCCTTCAAATGTTCTTTGCAATGATGT
TGAAAACTTTGGATCAGTTCATCATTATCAAATACCCTTATCGATCGTGT
TTATGATCGATGCTTCAATTAACATTCTCCTCAATGTCTTGCTTTTCACA
AGACATACAAAAATACCATGCCTTGGACGCCAATAACAACGCCGAACGAA
CTAGACCATGAGTTTTGGAAGAGTCTCAACCTAAGTACAGATTCCATGGA
TAAATGGGTGCAAAATGTGAATGTCCTCACTTTGGATGAAAAGGTGAAAG
AAATGTTGAATTCTACTGACCAGGATGTTGGTGACGATGGCCATGTTGAA
GTTATGAAGGTATCAACGCATTCAAACAAGAGATTTGATGTTCATGATGT
TGGCAACTTGGCTTCTAACCACTTTCATTATTCTCATTATCATGTTCGTC
GCCGACATCTCCAACCGTCAATTGACCGTCATCTTAACGTTCACAATCAT
CATCTCCGTTCTAACGTTATCCGCATGCAACTTTAGTGTTTACGTTATTG
CTCGCCGTCACTACGTTACCATACGTGGACAATACAAGAAACGAAGTACG
GGACGTATCCCAAAGAAACCCTTATTGACTTGTATAGCCATTGTGGCAAC
GTTCGGCTTACTCTGGCTACCATATTTGTTGCATAACGTATTGTTTCTAG
GTAACGTGTATGTTGTTGGAAGGAGCAAGCTGTTCAGTGAGTTAGTGCTT
TTTGTAGCATCGTTAAATTCAATCATTGATCCGGTGATTTTCATTTGGTT
CAATAGAGATTTGAAATCTGAACTTTGGTCCTTTAAAGAGAGGAATTCGA
CCAGGAGAGTTAAAAGACCTTCATTGGTCAATAATAATACAGATGGCTCT
CTCCTTACAAAGACTGAAATTTCATCATGACTTTCTCGTCAAATACATGG
CACGTCTCAAATCGAAACACGTCGCAAAATGTTTCATGAATCTTCAACTT
TCCCATCTCTTATTCGGTGTTCTTCTCATCGTCGGTCAGCTCGTTAACCA
TCGATATCTTCAATTAATCACTTTCGGGATCGTCCTTCAAATGTTCTTTG
CAATGATGTTGAAAACTTTGGATCAGTTCATCATTATCAAATACCCTTAT
CGATCGTGTTTATGATCGATGCTTCAATTAACATTCTCCTCAATGTCTTG
CTTTTCACAAGACATACAAAAATACCATGCCTTGGACGCCAATAACAACG
CCGAACGAACTAGACCATGAGTTTTGGAAGAGTCTCAACCTAAGTACAGA
TTCCATGGATAAATGGGTGCAAAATGTGAATGTCCTCACTTTGGATGAAA
AGGTGAAAGAAATGTTGAATTCTACTGACCAGGATGTTGGTGACGATGGC
CATGTTGAAGTTATGAAGGTATCAACGCATTCAAACAAGAGATTTGATGT
TCATGATGTTGGCAACTTGGCTTCTAACCACTTTCATTATTCTCATTATC
ATGTTCGTCGCCGACATCTCCAACCGTCAATTGACCGTCATCTTAACGTT
CACAATCATCATCTCCGTTCTAACGTTATCCGCATGCAACTTTAGTGTTT
ACGTTATTGCTCGCCGTCACTACGTTACCATACGTGGACAATACAAGAAA
CGAAGTACGGGACGTATCCCAAAGAAACCCTTATTGACTTGTATAGCCAT
TGTGGCAACGTTCGGCTTACTCTGGCTACCATATTTGTTGCATAACGTAT
TGTTTCTAGGTAACGTGTATGTTGTTGGAAGGAGCAAGCTGTTCAGTGAG
TTAGTGCTTTTTGTAGCATCGTTAAATTCAATCATTGATCCGGTGATTTT
CATTTGGTTCAATAGAGATTTGAAATCTGAACTTTGGTCCTTTAAAGAGA
GGAATTCGACCAGGAGAGTTAAAAGACCTTCATTGGTCAATAATAATACA
GATGGCTCTCTCCTTACAAAGACTGAAATTTCATCATGACTTTCTCGTCA
AATACATGGCACGTCTCAAATCGAAACACGTCGCAAAATGTTTCATGAAT
CTTCAACTTTCCCATCTCTTATTCGGTGTTCTTCTCATCGTCGGTCAGCT
CGTTAACCATCGATATCTTCAATTAATCACTTTCGGGATCGTCCTTCAAA
TGTTCTTTGCAATGATGTTGAAAACTTTGGATCAGTTCATCATTATCAAA
TACCCTTATCGATCGTGTTTATGATCGATGCTTCAATTAACATTCTCCTC
AATGTCTTGCTTTTCACAAGACATACAAAAATACCATGCCTTGGACGCCA
ATAACAACGCCGAACGAACTAGACCATGAGTTTTGGAAGAGTCTCAACCT
AAGTACAGATTCCATGGATAAATGGGTGCAAAATGTGAATGTCCTCACTT
TGGATGAAAAGGTGAAAGAAATGTTGAATTCTACTGACCAGGATGTTGGT
GACGATGGCCATGTTGAAGTTATGAAGGTATCAACGCATTCAAACAAGAG
ATTTGATGTTCATGATGTTGGCAACTTGGCTTCTAACCACTTTCATTATT
CTCATTATCATGTTCGTCGCCGACATCTCCAACCGTCAATTGACCGTCAT
CTTAACGTTCACAATCATCATCTCCGTTCTAACGTTATCCGCATGCAACT
TTAGTGTTTACGTTATTGCTCGCCGTCACTACGTTACCATACGTGGACAA
TACAAGAAACGAAGTACGGGACGTATCCCAAAGAAACCCTTATTGACTTG
TATAGCCATTGTGGCAACGTTCGGCTTACTCTGGCTACCATATTTGTTGC
ATAACGTATTGTTTCTAGGTAACGTGTATGTTGTTGGAAGGAGCAAGCTG
TTCAGTGAGTTAGTGCTTTTTGTAGCATCGTTAAATTCAATCATTGATCC
GGTGATTTTCATTTGGTTCAATAGAGATTTGAAATCTGAACTTTGGTCCT
TTAAAGAGAGGAATTCGACCAGGAGAGTTAAAAGACCTTCATTGGTCAAT
AATAATACAGATGGCTCTCTCCTTACAAAGACTGAAATTTCATCATGACT
TTCTCGTCAAATACATGGCACGTCTCAAATCGAAACACGTCGCAAAATGT
TTCATGAATCTTCAACTTTCCCATCTCTTATTCGGTGTTCTTCTCATCGT
CGGTCAGCTCGTTAACCATCGATATCTTCAATTAATCACTTTCGGGATCG
TCCTTCAAATGTTCTTTGCAATGATGTTGAAAACTTTGGATCAGTTCATC
ATTATCAAATACCCTTATCGATCGTGTTTATGATCGATGCTTCAATTAAC
ATTCTCCTCAATGTCTTGCTTTTCACAAGACATACAAAAATACCATGCCT
TGGACGCCAATAACAACGCCGAACGAACTAGACCATGAGTTTTGGAAGAG
TCTCAACCTAAGTACAGATTCCATGGATAAATGGGTGCAAAATGTGAATG
TCCTCACTTTGGATGAAAAGGTGAAAGAAATGTTGAATTCTACTGACCAG
GATGTTGGTGACGATGGCCATGTTGAAGTTATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001127XLOC_001127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002161-exon-sc0000018-1575043694:839245..839456TCONS_00002161-exon-sc0000018-1575043694:839245..839456Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1575043694:838556..838611TCONS_00002161-exon-sc0000018-1575043694:838556..838611Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1575043694:838270..838491TCONS_00002161-exon-sc0000018-1575043694:838270..838491Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1575043694:836223..837664TCONS_00002161-exon-sc0000018-1575043694:836223..837664Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1510915933:839245..839456TCONS_00002161-exon-sc0000018-1510915933:839245..839456Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1510915933:838556..838611TCONS_00002161-exon-sc0000018-1510915933:838556..838611Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1510915933:838270..838491TCONS_00002161-exon-sc0000018-1510915933:838270..838491Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1510915933:836223..837664TCONS_00002161-exon-sc0000018-1510915933:836223..837664Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1491911889:839245..839456TCONS_00002161-exon-sc0000018-1491911889:839245..839456Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1491911889:838556..838611TCONS_00002161-exon-sc0000018-1491911889:838556..838611Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1491911889:838270..838491TCONS_00002161-exon-sc0000018-1491911889:838270..838491Clytia hemisphaericaexon
TCONS_00002161-exon-sc0000018-1491911889:836223..837664TCONS_00002161-exon-sc0000018-1491911889:836223..837664Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002161-proteinTCONS_00002161-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:836223..839456 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24035 0.923332 0.0814197 7.77132e-05 1.38848 1.26271 2.43977 0.884945 2.33441 4.67391 2.99983 3.31663 0.727721 0.221562 0.00275375 0.511064 0 0.316622 0.437767 0.755851 2.78179 1.79092 3.75345 0.653823 0.615118 0.250942 3.20173 2.09301 2.8049 3.04402
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top