|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002157 ID=TCONS_00002157|Name=TCONS_00002157|organism=Clytia hemisphaerica|type=transcript|length=6685bpRun BLAST on NCBI protein sequence of TCONS_00002157-protein >TCONS_00002157-protein ID=TCONS_00002157-protein|Name=TCONS_00002157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp MKGKFCFHTPSEIKVVGSFLLKTMIKANHSIDIAVQMPQAVLHGKDYLNYRun BLAST on NCBI transcript from alignment at sc0000018:762016..792515- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002157 ID=TCONS_00002157|Name=TCONS_00002157|organism=Clytia hemisphaerica|type=transcript|length=30500bp|location=Sequence derived from alignment at sc0000018:762016..792515- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:762016..792515- >TCONS_00002157 ID=TCONS_00002157|Name=TCONS_00002157|organism=Clytia hemisphaerica|type=CDS|length=70587bp|location=Sequence derived from alignment at sc0000018:762016..792515- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002157 vs. Swiss-Prot (Human)
Match: NOL6 (Nucleolar protein 6 OS=Homo sapiens GN=NOL6 PE=1 SV=2) HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0 Identity = 378/1034 (36.56%), Postives = 570/1034 (55.13%), Query Frame = 3
Query: 1176 MKGKFCFHTPSEIKVVGSFLLKTMIKANHSIDIAVQMPQAVLHGKDYLNYRYYYKRAIYLSWLAYYLKDWE--HTEDLSFTCGTNIFKPTLKINLKGKVGKKFNVVLHLATPEGHFKLSRFLPLKNNIRHNWYHGYEQDTTEEIEFPTADYNNGVLEDMLYEDHLRLLYSTLKECPGMSEAILLLKTWLKQRSY-KGNVPFNGFCCSMLLVYLLSVRKISAHMSSYQMFRLTLHFIGTSDWSKEGITLNKDTNEDEKLPSLKDFHGVYPVVFVDSSGHLNLCSSLDTISYQMLRYEAQQSLALLDSTEEGSFELLFIKTKSFLQTVDHMFRIN-----DAGSFTTKLSTEENNKLISYGGNARPILLEKMSEILRRGLDERITSLFMKPSPLVQWSVNESCP---DSSKGPITVGVCLNASNYDNVLIMGPPADQPQAKEFRAFWGEKSELRRFQDGSINEAVVWPSSNSSQKKMVCKQIVQHLLKLHCAIYPSSIDYHGNSFDFILSS--NTSSFEHASANQKKATIPRGCGEEESTHVIKTFEELSRQLRGLSELPLVVNNIHAVDPLLRMTE---PLTAR-QYEVKEQSKGQDFLVPSNAKRSPLWCPVIKAYIQFEGSGQWPDNLEAIQHIRAAFHIKVAECIRQQLHFPAKATPRWIDVMKNGYVFRLSVIHYREMVLHKENVALGKSKTSHDIQAK-KLEMEIVKKPLHNSLIHSLNGQFGAFSLTCRLAKRWMSSQMLSNHFYEELIELLVASVFLSP---NPPNSSLCGFVRFLDHIATFDWNANPLIVNLNSEIKSESMEALKERFTNSRDHLPHMVVMTPYDVDGTLWTKQQPSPQVVKRXXXXXXXXXXXVESDGFE-FTQQTIMQLFRPSTKDYDIVIELDKNHVPKLPFIQXXXXXXXXXXXXLASMVSNNVSNEVLPVVDFDPARSFLDQLQELFNDTAMFFCDQYGGSQIGVVWKRNKLAAQPFKIMNAKYKHVEEDVXXXXXXXXXXXDTKITTNEETMLKTNTKAIIQDFSILGQGL 4211
+KG F F P+++ VVGS+LL T I+ + ++D+A+ MP+ +L KD LN RY+ KRA+YL+ LA++L + S+T G ++ KP+L + +GK + V LH P F+ R LP KNN+R WY G E PT YN VL+D + E HL+LL + L G+ + + LLK WL+QR KG F GF SML+V+L+S RKI MS YQ+ R L F+ T+D + GI+L + D LP+L DFH + VVF+DSSGHLNLC+ + +Y +++EA+ S+ LLDS + F LL + K ++ DH+ + A KL E + GG+ L ++ +L +GL R+ L P+ +W +++ P DS +T+G+ L +VL +GP ADQP+A +FR FWG +SELRRFQDG+I EAVVW +++ SQK+++ Q+V HLL LH I + + Y G D ++ TSS GEE ++ +++LSR L GL LPL V+ + P+LR TE P R + E + + L+P K P + + EGSGQWP + EA+Q +RAAF +++AE + QQ +AT DV+K+G+VFR+ V + RE + KE + + D A +LE + + PL S +H L Q AFS RLAKRW+ +Q+L F +E ++L+ A++FL P PP+S GF+RFL ++TFDW NPL VNLN+E+ E ++ F +R LP MV++TP D ++WT+ PS Q++++L +LA AL ++E + I +FRP YD++I L H+P+ ++V + ++S + ++PV+ +DP + +L QL+E F D A+FF DQ+GG IGV+WK QPFK + K + V ++ E ++ N +AI++DF++LG+GL
Sbjct: 148 VKGCFRFLPPAQVTVVGSYLLGTCIRPDINVDVALTMPREILQDKDGLNQRYFRKRALYLAHLAHHLAQDPLFGSVCFSYTNGCHL-KPSLLLRPRGKDERLVTVRLHPCPPPDFFRPCRLLPTKNNVRSAWYRGQSPAGDGSPEPPTPRYNTWVLQDTVLESHLQLLSTILSSAQGLKDGVALLKVWLRQRELDKGQGGFTGFLVSMLVVFLVSTRKIHTTMSGYQVLRSVLQFLATTDLTVNGISLC--LSSDPSLPALADFHQAFSVVFLDSSGHLNLCADVTASTYHQVQHEARLSMMLLDSRADDGFHLLLMTPKPMIRAFDHVLHLRPLSRLQAACHRLKLWPELQDN----GGDYVSAALGPLTTLLEQGLGARLNLLAHSRPPVPEWDISQDPPKHKDSGT--LTLGLLLRPEGLTSVLELGPEADQPEAAKFRQFWGSRSELRRFQDGAIREAVVWEAASMSQKRLIPHQVVTHLLALHADIPETCVHYVGGPLDALIQGLKETSS----------------TGEEALVAAVRCYDDLSRLLWGLEGLPLTVSAVQGAHPVLRYTEVFPPTPVRPAFSFYETLRERSSLLPRLDKPCPAYVEPMTVVCHLEGSGQWPQDAEAVQRVRAAFQLRLAELLTQQHGLQCRATATHTDVLKDGFVFRIRVAYQREPQILKEVQSPEGMISLRDTAASLRLERDTRQLPLLTSALHGLQQQHPAFSGVARLAKRWVRAQLLGEGFADESLDLVAAALFLHPEPFTPPSSPQVGFLRFLFLVSTFDWKNNPLFVNLNNELTVEEQVEIRSGFLAARAQLPVMVIVTPQDRKNSVWTQDGPSAQILQQLVVLAAEALPMLEKQLMDPRGPGDIRTVFRPPLDIYDVLIRLSPRHIPR-----HRQAVDSPAASFCRGLLSQPGPSSLMPVLGYDPPQLYLTQLREAFGDLALFFYDQHGGEVIGVLWKPTSFQPQPFKASSTKGRMV------------------MSRGGELVMVPNVEAILEDFAVLGEGL 1133 The following BLAST results are available for this feature:
BLAST of TCONS_00002157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.