TCONS_00002153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002153
Unique NameTCONS_00002153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002153 ID=TCONS_00002153|Name=TCONS_00002153|organism=Clytia hemisphaerica|type=transcript|length=955bp
TGGTATGAGCTTCAAAATAAGATTCGTTTCACATCTTATTCTGGAACCAA
AGACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTG
ACGAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGT
CATCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGA
TCCTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACA
CCAGAGCTATTCGTTTTAATATCGAAGgCGTGGATCGCAACGGCAAGTGG
AGGGATCACCCACAAACATATAACCTCATGGATGAAATGATGGAAGAAAT
TCCTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATT
CTATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGA
GCTTATTACCATCGACCCTATAAACTATCTAAAAAAGATGCCATGGGTAC
AGATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACA
GTCAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAA
GTGGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGAC
GCCATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAA
AgGCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAA
AGAAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATC
TGATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAA
CAGGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCA
GAGATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCC
CATTN
Run BLAST on NCBI

transcript from alignment at sc0000018:628009..634269-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002153 ID=TCONS_00002153|Name=TCONS_00002153|organism=Clytia hemisphaerica|type=transcript|length=6261bp|location=Sequence derived from alignment at sc0000018:628009..634269- (Clytia hemisphaerica)
TGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGG
TATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTAT
GAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAG
CTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTT
CAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAA
AATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAAT
AAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAG
GTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTG
TCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCA
ATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATA
TATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATAT
TCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCT
TACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTAC
TATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTAT
CTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTG
CTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTT
GGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGT
ATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATG
AGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGC
TTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTC
AAAATAAGGTGCCAATANTGAAAATATTCAGTGAAGTTTCCTTTTACCTT
TTACCAAAATTCGAACGTTCGAAATGGATTAAGCCTGATTTACACTTCAA
CTCAAAAACAAAAAACTAGAAAATTAATTAGCGGGAGGGGGAAGTCTATT
CGGGACCTTGAGTATCCCTTTGTTTGGGAGACCCAACCTTATCTTCTCGC
TGCAAATGCTGAAACCCCCCGGATTTACCAATTTTACCCCCCAATTTTAG
GTTTAAAGCCCTCTGGAATTCTGAATTCTTGTTCAATTCTGCAACCCTCA
TGGGGGTATACGGTTTTATCTTTCAAAAGCCCTTTCGAGTGATCACCTTA
TTCAATTTCTACTTTTAACACAATTCTTGGTCAAATGGTATAAGAGATTA
TAGTTGATTCCCTCTAATTCGATCTTCAGACAATGAATTTTCTTCCCCAA
TAAAGATTCGAATTACGGAGAGTACTTTAAAAGATTTTCCAGTTGAAGGG
ACCAATGTATTAATTAGCTCGAATTACAGAAACATTATGAATAGGAGAGA
GTTGACAGTATTCTCTTAATACATCGTTAACAACCTCGTGTCTAGCATAA
TGTTCTTAAAATTTACATTAACCGCCTTAATGGATTGAGAATTTTAGAAT
CGTTTAATGGACATAGGGCACTTCTCTCACTGGGCAATTTTTCTGCTAAT
TATTCCATGCGGGATGGACAGTCCCCCGGGTTTATAATACGAGAGCGAGC
GTCCTGTGAGTAAGGATTTCTTATCAATATACATTGATGCTTCTGAAAAC
CTTGTGGATATCGCAAACAAATGAAAAAAAATAACAATATTTCACAAGTT
TACCCTAAGAATGCATAAGCTTCAATTCTGAACTTAGATATTTACTTATT
AGCAATCTTTCCCTCATAACGTTGCCAATAAAAACTAAAAATACAGTTGA
TTATTCTTAAGGATTGTTACAAAGCGCCGTTTCTTCCAAGATAACTTGAC
GACGGACATACATCAAAACAAACAGCGACATGCTATGAAAGGACCGAAAA
TGCTGAGCCAAAAATGTGAATCATTCTGAAATCTCTGCAGCTAAATTTCC
ATTCGAAATTTCTTATAGATTCGTTTCACATCTTATTCTGGAACCAAAGA
CTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGACG
AGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCAT
CCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGATCC
TCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACCA
GAGCTATTCGTTTTAATATCGAAGGTATGAACAATATTATCATATATCAT
AATGAAAAAAATGAAAAATAGGCTAAATTTAAGTCATCCAGAGTTGCAAC
TCAGTAGGTACGAAACGTTAAATCAACGTCTATTTAACGTCCCTAACGTT
CATAAAACGTTAAATGAACGTGAAAAAATGTTGTGTACCGGCTTGGAAGA
TTATGAGCAATATAATTCAGTGGGGTTTTTAACTAACAGGGGTTCTAAAA
GGGTGGTGCCTTGAACATAGCATTCCATTTTTTTATATAATAGGCGTGGA
TCGCAACGGCAAGTGGAGGGATCACCCACAAACATATAACCTCATGGATG
AAATGATGGAAGAAATTCCTGGCAAAGATAATTATGGTGGGAATGTATCA
GCAAGTTCTTTTGATTCTATTGCAATGAGTGCAAACCCTTCCAAAAGTGG
ACAACCATTAAACGGAGCTTATTACCATCGACCCTATAAACTATGTAAGA
ATTGATCTTTTTTGTTTTTAAGTTTTAGTTAGTCTGTGACCACGCAGACG
GAAGCGACCCAAAGGCTCTTCTTTCGATAGCTAGCTACCCAAAGGTAGGG
GAGAGCGCCACTCTTTCTCCCTGGATTGTTCCACCTTCCCTTGATCCTTC
CCTTAATTGCTGAGCATCAAGCAGAGAGGCGTCAAGTACAATGTAGGGAA
TATTTGGTATGACCCAGCTGGGGATTGAACCTATATCCTTGCGCAACGTA
GGCGGATGCTTTACCACTGTACTACGGTCACCTTTTTAGTTGTCTGTAAA
CACACCTGAAAATCTACGGAAATTTCAAAATTAATTTCCGAACACTACAT
TATACACGTGAGGTACACTCTTGTGTAGAGAAGATTTTCAATAAAATTAT
TATCTTTGTTAAAGGGTGCATATCTGTGTGACATAGATAATAAGGCTTTG
TTGTAGCAAAAACCTTTTTACTGCATCGTCCTTATTATCTGACCATTTGG
AAATCCACCTCCCAAGGATATGATGTAAAATTTCAATTTATTACGAACCA
GGTTAAAAAAATCAAGATATTAAAATCTGAATAACATATTCTAAGGCTTG
ATGTTAGCAGAATTTTATTTGTTAGTTCGCTATAACTTTGATCCTATTTG
CGCATGACTTCCTCTTTATCTAGCTTTAACCGAATCATACGAGGCTATCT
AGCACTAGAATATCTCTGGTAAATTCCCCGATCTTTTTTACAAATTTAAG
CTTTAGAACACCCTGTGTCCAGCCCCACCGGAAAATTTCATTCCCGTTGG
GAAAATATCCAGGAATTTCAGCACCTCTGGAAAATTGACTTTGATTTCAT
CCCTATTCGAAATTCATGATTAAAAATTACACTCCAAAACCATCCCCACT
ACATTTTTTAACCTTGGAGCAATAGAAATACTATCTTTATTGGGATTTCA
ATAGGAATTTTTTATCCCCACTGAGGAAAAAAGTTTCACCGAGGCTGTTT
AGAAAGTGGTGTTTTAGAAAAAGAAATTTCCGATGGAAAAAGGAGAGAAA
GTGTGCGCGATTGAAATCACTGTATCATTAATAATAAACACACTAAAAAC
TAATAAACAATAAATACACCTTTTCGACCCTAAAAACGTCCCAGTCTTTT
TTTACTACAGTATTGTCTATAGGTGCGAAAAAAAAAGGATTGGGACGGTT
TTGGGTAGTAAAACGGACCAAAAAATGCCCGCACAGCAATTGGTGGCTAC
GGTCAAAAAGGTGTATTTCCATATAAATATTCTGAATTTCATTATTCAGA
ACTTCCATTTATTTCATCATATGATCGATACCTTTTATTCCCTCGGTATA
ATGTAGCTAAAAAAGATGCCATGGGTACAGATTCAACGCAGCGTGGTTAT
TCAGATCGTTTGTACATGGCCATGAACAGTCAAGAGAGAATCGCTGGTCA
AACTTACACAGATAAAGATGGAAACGAAGTGGAGACCAAAGTCAGTTACG
CTATCCCCATGGAGATCATTTACTTGACGCCATTAGCTAAATGGAATCCT
TATGATATCCAATACTCAGAGGACCCAAAGGTAAAAATTCATTTTTATTC
ATCCTTTTCTGATTCTGATACCACTTACGATAGACCTTTTCATAACTTAC
GTCAAGAACATCACTTGCCTCGTATTCAAACAATTACCATGGTGATTATG
TCCCTTGAGACATTAATTGATCTTTTTATGAATAAAAAGTAGTTTTATCA
AAATCCGCTGGGAGTTAATCACCATGGCAATATTTTCAAAACGAGGCAAG
TGATGTTCGTAACGTAATTTGTCTATTGTATATATCACATCCATCAGTCA
AATCAAAAAGTGGTGTATAAGTGGCTTTGGGTACGAGATTGCATTCCCCT
GGGAGGGATACTGTAGGCTATGATTGTCAAAATCCGAGAAAAGATTGGGT
TTTCGAGGCGAGTTTACAGTTACCTTATTACACGAATATTACTTGGCAAG
TATTCAACGGCATCAATAAATAAATAAATTTTTGTTGCTTCTTGCCTGTG
ACCCATCCAAATATTCAAGCTTTAATATTCAACGGCCTTGAAATTAACAC
AATTTAAAATTGTTTTCTTCATTCATTCATCACCAGGCCACCGGGTCAGG
CAGCAAAGGCAATCCATACAGTCACTCGGATCAAAGAAACTTTTTCCACA
CTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTGATGCTGCTGATACT
TCTAAAACTGGTGGTGTATGGATCAAGAACTCAACAGGTACGAATAAATT
CACATTTTAAGTCCAAACGTGTTGTTATTGACCAAACTCGTTCCCGGTCC
CTTAGTTCGCTTTTAACTAATCTCGGTAGTGCTCACGAAAGTACCGACGC
CCATCTGCCGTATGTATCACAGTCACTGTGAACATAAAATGTGATAGCGA
GCCGAGGTTAATTAATCAGAGACTAAAAAGTGACAACTGGTACAAGATCT
TAAACCAATACCTAACCCTATTCTAGGGGCGGTTCAAAACTAGGGGGGGG
GCTGACCACCCCTTAACTTTTAATCTGGTGGGTCTTTTCGGATGAAATTT
GGCACACAAGATCCTTGTCACATAAGTTAACTTTTGACAGGAAGTTTTTT
TGACGATGTGACTCATCATGCCCAAAATGAGCAAAAACCGAAAATTTCCT
TTGATCTTATAACTAGCTATTGTGATTTAACAAAGGCACTAAGAACAATA
AACGAGAATGCTTTTTCAAAACAATGAAAAATTAAATTGAATCTCGTCAA
TATATGAAGTGAAGGTAGAGAGTCTACCATCATGTTTCCCTAACACCCTG
CCGGTTCTTGGGATTCGAACACAGCCCATTGCGGTGTAAGTTCGTGATCG
AAATGTGCTTCCAGGTAGGGTTTAGGGAAATATTGTGATAGACTCTCTAC
CTTCACTTATATATCACTCTCTCTCTCTCTCTCACTCTGGCTGATAATCG
AAATGAGCTTAGTAAAGCTCAAATTGTAGATGTAGAACGATAAACTCGGT
AGACATTTTATCATTAACATAATTGTTAACTAAATTTAGAATAATTTAAC
TCTGGCAATGGAATCTTGTTTTTGAGAATCTTGAGTGGAAGTTCTTTCAT
GAAATACAGATTTTAGCTCTTGAAGGAGCTGAAAGAAAGTGCTGTAATCG
TAATGAGTATTCATTGTCCGTTTGGAAATTCAGGGTCTTAATTATCACAA
TTTTTTTCAATGCATTTTGTCATAGTTACCTCAAAAACTGTTATTTATTC
TTTAAACAGGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATG
TCCCCAGAGATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCAT
CATGCCCATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001122XLOC_001122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002153-exon-sc0000018-1575043694:634249..634269TCONS_00002153-exon-sc0000018-1575043694:634249..634269Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1575043694:631896..632151TCONS_00002153-exon-sc0000018-1575043694:631896..632151Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1575043694:631426..631626TCONS_00002153-exon-sc0000018-1575043694:631426..631626Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1575043694:629840..630063TCONS_00002153-exon-sc0000018-1575043694:629840..630063Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1575043694:629133..629283TCONS_00002153-exon-sc0000018-1575043694:629133..629283Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1575043694:628009..628110TCONS_00002153-exon-sc0000018-1575043694:628009..628110Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1510915933:634249..634269TCONS_00002153-exon-sc0000018-1510915933:634249..634269Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1510915933:631896..632151TCONS_00002153-exon-sc0000018-1510915933:631896..632151Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1510915933:631426..631626TCONS_00002153-exon-sc0000018-1510915933:631426..631626Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1510915933:629840..630063TCONS_00002153-exon-sc0000018-1510915933:629840..630063Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1510915933:629133..629283TCONS_00002153-exon-sc0000018-1510915933:629133..629283Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1510915933:628009..628110TCONS_00002153-exon-sc0000018-1510915933:628009..628110Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1491911889:634249..634269TCONS_00002153-exon-sc0000018-1491911889:634249..634269Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1491911889:631896..632151TCONS_00002153-exon-sc0000018-1491911889:631896..632151Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1491911889:631426..631626TCONS_00002153-exon-sc0000018-1491911889:631426..631626Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1491911889:629840..630063TCONS_00002153-exon-sc0000018-1491911889:629840..630063Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1491911889:629133..629283TCONS_00002153-exon-sc0000018-1491911889:629133..629283Clytia hemisphaericaexon
TCONS_00002153-exon-sc0000018-1491911889:628009..628110TCONS_00002153-exon-sc0000018-1491911889:628009..628110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:628009..634269 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.00178096	0.00142423	3.41144	1.47423	0.650969	1.56907	11.57	24.3562	0	0	1.87097	5.32364	53.6038	59.5997	0	0	0	0.00042862	0	0.0834559	0	0	0.000192453	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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