TCONS_00002152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002152
Unique NameTCONS_00002152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002152 ID=TCONS_00002152|Name=TCONS_00002152|organism=Clytia hemisphaerica|type=transcript|length=953bp
GTATGAGCTTCAAAATAAGATTCGTTTCACATCTTATTCTGGAACCAAAG
ACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGAC
GAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCA
TCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGATC
CTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACC
AGAGCTATTCGTTTTAATATCGAAGgCGTGGATCGCAACGGCAAGTGGAG
GGATCACCCACAAACATATAACCTCATGGATGAAATGATGGAAGAAATTC
CTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCT
ATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGC
TTATTACCATCGACCCTATAAACTATCTAAAAAAGATGCCATGGGTACAG
ATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAGT
CAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAGT
GGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACGC
CATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAAg
GCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAG
AAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTG
ATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACA
GGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCAGA
GATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCCCA
TTN
Run BLAST on NCBI

transcript from alignment at sc0000018:628009..633609-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002152 ID=TCONS_00002152|Name=TCONS_00002152|organism=Clytia hemisphaerica|type=transcript|length=5601bp|location=Sequence derived from alignment at sc0000018:628009..633609- (Clytia hemisphaerica)
GTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTA
TGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGA
GCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCT
TCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCA
AAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAA
TAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAA
GGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGT
GCCAATANTGAAAATATTCAGTGAAGTTTCCTTTTACCTTTTACCAAAAT
TCGAACGTTCGAAATGGATTAAGCCTGATTTACACTTCAACTCAAAAACA
AAAAACTAGAAAATTAATTAGCGGGAGGGGGAAGTCTATTCGGGACCTTG
AGTATCCCTTTGTTTGGGAGACCCAACCTTATCTTCTCGCTGCAAATGCT
GAAACCCCCCGGATTTACCAATTTTACCCCCCAATTTTAGGTTTAAAGCC
CTCTGGAATTCTGAATTCTTGTTCAATTCTGCAACCCTCATGGGGGTATA
CGGTTTTATCTTTCAAAAGCCCTTTCGAGTGATCACCTTATTCAATTTCT
ACTTTTAACACAATTCTTGGTCAAATGGTATAAGAGATTATAGTTGATTC
CCTCTAATTCGATCTTCAGACAATGAATTTTCTTCCCCAATAAAGATTCG
AATTACGGAGAGTACTTTAAAAGATTTTCCAGTTGAAGGGACCAATGTAT
TAATTAGCTCGAATTACAGAAACATTATGAATAGGAGAGAGTTGACAGTA
TTCTCTTAATACATCGTTAACAACCTCGTGTCTAGCATAATGTTCTTAAA
ATTTACATTAACCGCCTTAATGGATTGAGAATTTTAGAATCGTTTAATGG
ACATAGGGCACTTCTCTCACTGGGCAATTTTTCTGCTAATTATTCCATGC
GGGATGGACAGTCCCCCGGGTTTATAATACGAGAGCGAGCGTCCTGTGAG
TAAGGATTTCTTATCAATATACATTGATGCTTCTGAAAACCTTGTGGATA
TCGCAAACAAATGAAAAAAAATAACAATATTTCACAAGTTTACCCTAAGA
ATGCATAAGCTTCAATTCTGAACTTAGATATTTACTTATTAGCAATCTTT
CCCTCATAACGTTGCCAATAAAAACTAAAAATACAGTTGATTATTCTTAA
GGATTGTTACAAAGCGCCGTTTCTTCCAAGATAACTTGACGACGGACATA
CATCAAAACAAACAGCGACATGCTATGAAAGGACCGAAAATGCTGAGCCA
AAAATGTGAATCATTCTGAAATCTCTGCAGCTAAATTTCCATTCGAAATT
TCTTATAGATTCGTTTCACATCTTATTCTGGAACCAAAGACTTATTAGAG
AATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGACGAGAACAAGAA
ACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCATCCTTTGTCTA
AAGACTTACCAACAAGCTATTTGAAACCCATTATGGATCCTCATTCTCAA
AAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACCAGAGCTATTCG
TTTTAATATCGAAGGTATGAACAATATTATCATATATCATAATGAAAAAA
ATGAAAAATAGGCTAAATTTAAGTCATCCAGAGTTGCAACTCAGTAGGTA
CGAAACGTTAAATCAACGTCTATTTAACGTCCCTAACGTTCATAAAACGT
TAAATGAACGTGAAAAAATGTTGTGTACCGGCTTGGAAGATTATGAGCAA
TATAATTCAGTGGGGTTTTTAACTAACAGGGGTTCTAAAAGGGTGGTGCC
TTGAACATAGCATTCCATTTTTTTATATAATAGGCGTGGATCGCAACGGC
AAGTGGAGGGATCACCCACAAACATATAACCTCATGGATGAAATGATGGA
AGAAATTCCTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTT
TTGATTCTATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTA
AACGGAGCTTATTACCATCGACCCTATAAACTATGTAAGAATTGATCTTT
TTTGTTTTTAAGTTTTAGTTAGTCTGTGACCACGCAGACGGAAGCGACCC
AAAGGCTCTTCTTTCGATAGCTAGCTACCCAAAGGTAGGGGAGAGCGCCA
CTCTTTCTCCCTGGATTGTTCCACCTTCCCTTGATCCTTCCCTTAATTGC
TGAGCATCAAGCAGAGAGGCGTCAAGTACAATGTAGGGAATATTTGGTAT
GACCCAGCTGGGGATTGAACCTATATCCTTGCGCAACGTAGGCGGATGCT
TTACCACTGTACTACGGTCACCTTTTTAGTTGTCTGTAAACACACCTGAA
AATCTACGGAAATTTCAAAATTAATTTCCGAACACTACATTATACACGTG
AGGTACACTCTTGTGTAGAGAAGATTTTCAATAAAATTATTATCTTTGTT
AAAGGGTGCATATCTGTGTGACATAGATAATAAGGCTTTGTTGTAGCAAA
AACCTTTTTACTGCATCGTCCTTATTATCTGACCATTTGGAAATCCACCT
CCCAAGGATATGATGTAAAATTTCAATTTATTACGAACCAGGTTAAAAAA
ATCAAGATATTAAAATCTGAATAACATATTCTAAGGCTTGATGTTAGCAG
AATTTTATTTGTTAGTTCGCTATAACTTTGATCCTATTTGCGCATGACTT
CCTCTTTATCTAGCTTTAACCGAATCATACGAGGCTATCTAGCACTAGAA
TATCTCTGGTAAATTCCCCGATCTTTTTTACAAATTTAAGCTTTAGAACA
CCCTGTGTCCAGCCCCACCGGAAAATTTCATTCCCGTTGGGAAAATATCC
AGGAATTTCAGCACCTCTGGAAAATTGACTTTGATTTCATCCCTATTCGA
AATTCATGATTAAAAATTACACTCCAAAACCATCCCCACTACATTTTTTA
ACCTTGGAGCAATAGAAATACTATCTTTATTGGGATTTCAATAGGAATTT
TTTATCCCCACTGAGGAAAAAAGTTTCACCGAGGCTGTTTAGAAAGTGGT
GTTTTAGAAAAAGAAATTTCCGATGGAAAAAGGAGAGAAAGTGTGCGCGA
TTGAAATCACTGTATCATTAATAATAAACACACTAAAAACTAATAAACAA
TAAATACACCTTTTCGACCCTAAAAACGTCCCAGTCTTTTTTTACTACAG
TATTGTCTATAGGTGCGAAAAAAAAAGGATTGGGACGGTTTTGGGTAGTA
AAACGGACCAAAAAATGCCCGCACAGCAATTGGTGGCTACGGTCAAAAAG
GTGTATTTCCATATAAATATTCTGAATTTCATTATTCAGAACTTCCATTT
ATTTCATCATATGATCGATACCTTTTATTCCCTCGGTATAATGTAGCTAA
AAAAGATGCCATGGGTACAGATTCAACGCAGCGTGGTTATTCAGATCGTT
TGTACATGGCCATGAACAGTCAAGAGAGAATCGCTGGTCAAACTTACACA
GATAAAGATGGAAACGAAGTGGAGACCAAAGTCAGTTACGCTATCCCCAT
GGAGATCATTTACTTGACGCCATTAGCTAAATGGAATCCTTATGATATCC
AATACTCAGAGGACCCAAAGGTAAAAATTCATTTTTATTCATCCTTTTCT
GATTCTGATACCACTTACGATAGACCTTTTCATAACTTACGTCAAGAACA
TCACTTGCCTCGTATTCAAACAATTACCATGGTGATTATGTCCCTTGAGA
CATTAATTGATCTTTTTATGAATAAAAAGTAGTTTTATCAAAATCCGCTG
GGAGTTAATCACCATGGCAATATTTTCAAAACGAGGCAAGTGATGTTCGT
AACGTAATTTGTCTATTGTATATATCACATCCATCAGTCAAATCAAAAAG
TGGTGTATAAGTGGCTTTGGGTACGAGATTGCATTCCCCTGGGAGGGATA
CTGTAGGCTATGATTGTCAAAATCCGAGAAAAGATTGGGTTTTCGAGGCG
AGTTTACAGTTACCTTATTACACGAATATTACTTGGCAAGTATTCAACGG
CATCAATAAATAAATAAATTTTTGTTGCTTCTTGCCTGTGACCCATCCAA
ATATTCAAGCTTTAATATTCAACGGCCTTGAAATTAACACAATTTAAAAT
TGTTTTCTTCATTCATTCATCACCAGGCCACCGGGTCAGGCAGCAAAGGC
AATCCATACAGTCACTCGGATCAAAGAAACTTTTTCCACACTCCTGCATC
CTTCTTCACTGGTGTTGGCGAATCTGATGCTGCTGATACTTCTAAAACTG
GTGGTGTATGGATCAAGAACTCAACAGGTACGAATAAATTCACATTTTAA
GTCCAAACGTGTTGTTATTGACCAAACTCGTTCCCGGTCCCTTAGTTCGC
TTTTAACTAATCTCGGTAGTGCTCACGAAAGTACCGACGCCCATCTGCCG
TATGTATCACAGTCACTGTGAACATAAAATGTGATAGCGAGCCGAGGTTA
ATTAATCAGAGACTAAAAAGTGACAACTGGTACAAGATCTTAAACCAATA
CCTAACCCTATTCTAGGGGCGGTTCAAAACTAGGGGGGGGGCTGACCACC
CCTTAACTTTTAATCTGGTGGGTCTTTTCGGATGAAATTTGGCACACAAG
ATCCTTGTCACATAAGTTAACTTTTGACAGGAAGTTTTTTTGACGATGTG
ACTCATCATGCCCAAAATGAGCAAAAACCGAAAATTTCCTTTGATCTTAT
AACTAGCTATTGTGATTTAACAAAGGCACTAAGAACAATAAACGAGAATG
CTTTTTCAAAACAATGAAAAATTAAATTGAATCTCGTCAATATATGAAGT
GAAGGTAGAGAGTCTACCATCATGTTTCCCTAACACCCTGCCGGTTCTTG
GGATTCGAACACAGCCCATTGCGGTGTAAGTTCGTGATCGAAATGTGCTT
CCAGGTAGGGTTTAGGGAAATATTGTGATAGACTCTCTACCTTCACTTAT
ATATCACTCTCTCTCTCTCTCTCACTCTGGCTGATAATCGAAATGAGCTT
AGTAAAGCTCAAATTGTAGATGTAGAACGATAAACTCGGTAGACATTTTA
TCATTAACATAATTGTTAACTAAATTTAGAATAATTTAACTCTGGCAATG
GAATCTTGTTTTTGAGAATCTTGAGTGGAAGTTCTTTCATGAAATACAGA
TTTTAGCTCTTGAAGGAGCTGAAAGAAAGTGCTGTAATCGTAATGAGTAT
TCATTGTCCGTTTGGAAATTCAGGGTCTTAATTATCACAATTTTTTTCAA
TGCATTTTGTCATAGTTACCTCAAAAACTGTTATTTATTCTTTAAACAGG
TCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCAGAGA
TTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCCCATT
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001122XLOC_001122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002152-exon-sc0000018-1575043694:633591..633609TCONS_00002152-exon-sc0000018-1575043694:633591..633609Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1575043694:631896..632151TCONS_00002152-exon-sc0000018-1575043694:631896..632151Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1575043694:631426..631626TCONS_00002152-exon-sc0000018-1575043694:631426..631626Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1575043694:629840..630063TCONS_00002152-exon-sc0000018-1575043694:629840..630063Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1575043694:629133..629283TCONS_00002152-exon-sc0000018-1575043694:629133..629283Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1575043694:628009..628110TCONS_00002152-exon-sc0000018-1575043694:628009..628110Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1510915933:633591..633609TCONS_00002152-exon-sc0000018-1510915933:633591..633609Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1510915933:631896..632151TCONS_00002152-exon-sc0000018-1510915933:631896..632151Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1510915933:631426..631626TCONS_00002152-exon-sc0000018-1510915933:631426..631626Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1510915933:629840..630063TCONS_00002152-exon-sc0000018-1510915933:629840..630063Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1510915933:629133..629283TCONS_00002152-exon-sc0000018-1510915933:629133..629283Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1510915933:628009..628110TCONS_00002152-exon-sc0000018-1510915933:628009..628110Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1491911889:633591..633609TCONS_00002152-exon-sc0000018-1491911889:633591..633609Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1491911889:631896..632151TCONS_00002152-exon-sc0000018-1491911889:631896..632151Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1491911889:631426..631626TCONS_00002152-exon-sc0000018-1491911889:631426..631626Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1491911889:629840..630063TCONS_00002152-exon-sc0000018-1491911889:629840..630063Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1491911889:629133..629283TCONS_00002152-exon-sc0000018-1491911889:629133..629283Clytia hemisphaericaexon
TCONS_00002152-exon-sc0000018-1491911889:628009..628110TCONS_00002152-exon-sc0000018-1491911889:628009..628110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:628009..633609 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0428781	0.0511539	0	0	0	1.15537e-08	0	0	0	0	0	0	0	0	0	0	0	0.0214755	0	0	0	0	0.00669321	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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