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TCONS_00002150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002150
Unique NameTCONS_00002150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002150 ID=TCONS_00002150|Name=TCONS_00002150|organism=Clytia hemisphaerica|type=transcript|length=953bp
GTATGAGCTTCAAAATAAGATTCGTTTCACATCTTATTCTGGAACCAAAG
ACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGAC
GAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCA
TCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGATC
CTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACC
AGAGCTATTCGTTTTAATATCGAAGgCGTGGATCGCAACGGCAAGTGGAG
GGATCACCCACAAACATATAACCTCATGGATGAAATGATGGAAGAAATTC
CTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCT
ATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGC
TTATTACCATCGACCCTATAAACTATCTAAAAAAGATGCCATGGGTACAG
ATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAGT
CAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAGT
GGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACGC
CATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAAg
GCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAG
AAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTG
ATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACA
GGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCAGA
GATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCCCA
TTN
Run BLAST on NCBI

transcript from alignment at sc0000018:628009..633280-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002150 ID=TCONS_00002150|Name=TCONS_00002150|organism=Clytia hemisphaerica|type=transcript|length=5272bp|location=Sequence derived from alignment at sc0000018:628009..633280- (Clytia hemisphaerica)
GTATGAGCTTCAAAATAAGGTGCCAATANTGAAAATATTCAGTGAAGTTT CCTTTTACCTTTTACCAAAATTCGAACGTTCGAAATGGATTAAGCCTGAT TTACACTTCAACTCAAAAACAAAAAACTAGAAAATTAATTAGCGGGAGGG GGAAGTCTATTCGGGACCTTGAGTATCCCTTTGTTTGGGAGACCCAACCT TATCTTCTCGCTGCAAATGCTGAAACCCCCCGGATTTACCAATTTTACCC CCCAATTTTAGGTTTAAAGCCCTCTGGAATTCTGAATTCTTGTTCAATTC TGCAACCCTCATGGGGGTATACGGTTTTATCTTTCAAAAGCCCTTTCGAG TGATCACCTTATTCAATTTCTACTTTTAACACAATTCTTGGTCAAATGGT ATAAGAGATTATAGTTGATTCCCTCTAATTCGATCTTCAGACAATGAATT TTCTTCCCCAATAAAGATTCGAATTACGGAGAGTACTTTAAAAGATTTTC CAGTTGAAGGGACCAATGTATTAATTAGCTCGAATTACAGAAACATTATG AATAGGAGAGAGTTGACAGTATTCTCTTAATACATCGTTAACAACCTCGT GTCTAGCATAATGTTCTTAAAATTTACATTAACCGCCTTAATGGATTGAG AATTTTAGAATCGTTTAATGGACATAGGGCACTTCTCTCACTGGGCAATT TTTCTGCTAATTATTCCATGCGGGATGGACAGTCCCCCGGGTTTATAATA CGAGAGCGAGCGTCCTGTGAGTAAGGATTTCTTATCAATATACATTGATG CTTCTGAAAACCTTGTGGATATCGCAAACAAATGAAAAAAAATAACAATA TTTCACAAGTTTACCCTAAGAATGCATAAGCTTCAATTCTGAACTTAGAT ATTTACTTATTAGCAATCTTTCCCTCATAACGTTGCCAATAAAAACTAAA AATACAGTTGATTATTCTTAAGGATTGTTACAAAGCGCCGTTTCTTCCAA GATAACTTGACGACGGACATACATCAAAACAAACAGCGACATGCTATGAA AGGACCGAAAATGCTGAGCCAAAAATGTGAATCATTCTGAAATCTCTGCA GCTAAATTTCCATTCGAAATTTCTTATAGATTCGTTTCACATCTTATTCT GGAACCAAAGACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTT TGGATTTGACGAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTA TCTTATGTCATCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCC ATTATGGATCCTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATT CTTAAACACCAGAGCTATTCGTTTTAATATCGAAGGTATGAACAATATTA TCATATATCATAATGAAAAAAATGAAAAATAGGCTAAATTTAAGTCATCC AGAGTTGCAACTCAGTAGGTACGAAACGTTAAATCAACGTCTATTTAACG TCCCTAACGTTCATAAAACGTTAAATGAACGTGAAAAAATGTTGTGTACC GGCTTGGAAGATTATGAGCAATATAATTCAGTGGGGTTTTTAACTAACAG GGGTTCTAAAAGGGTGGTGCCTTGAACATAGCATTCCATTTTTTTATATA ATAGGCGTGGATCGCAACGGCAAGTGGAGGGATCACCCACAAACATATAA CCTCATGGATGAAATGATGGAAGAAATTCCTGGCAAAGATAATTATGGTG GGAATGTATCAGCAAGTTCTTTTGATTCTATTGCAATGAGTGCAAACCCT TCCAAAAGTGGACAACCATTAAACGGAGCTTATTACCATCGACCCTATAA ACTATGTAAGAATTGATCTTTTTTGTTTTTAAGTTTTAGTTAGTCTGTGA CCACGCAGACGGAAGCGACCCAAAGGCTCTTCTTTCGATAGCTAGCTACC CAAAGGTAGGGGAGAGCGCCACTCTTTCTCCCTGGATTGTTCCACCTTCC CTTGATCCTTCCCTTAATTGCTGAGCATCAAGCAGAGAGGCGTCAAGTAC AATGTAGGGAATATTTGGTATGACCCAGCTGGGGATTGAACCTATATCCT TGCGCAACGTAGGCGGATGCTTTACCACTGTACTACGGTCACCTTTTTAG TTGTCTGTAAACACACCTGAAAATCTACGGAAATTTCAAAATTAATTTCC GAACACTACATTATACACGTGAGGTACACTCTTGTGTAGAGAAGATTTTC AATAAAATTATTATCTTTGTTAAAGGGTGCATATCTGTGTGACATAGATA ATAAGGCTTTGTTGTAGCAAAAACCTTTTTACTGCATCGTCCTTATTATC TGACCATTTGGAAATCCACCTCCCAAGGATATGATGTAAAATTTCAATTT ATTACGAACCAGGTTAAAAAAATCAAGATATTAAAATCTGAATAACATAT TCTAAGGCTTGATGTTAGCAGAATTTTATTTGTTAGTTCGCTATAACTTT GATCCTATTTGCGCATGACTTCCTCTTTATCTAGCTTTAACCGAATCATA CGAGGCTATCTAGCACTAGAATATCTCTGGTAAATTCCCCGATCTTTTTT ACAAATTTAAGCTTTAGAACACCCTGTGTCCAGCCCCACCGGAAAATTTC ATTCCCGTTGGGAAAATATCCAGGAATTTCAGCACCTCTGGAAAATTGAC TTTGATTTCATCCCTATTCGAAATTCATGATTAAAAATTACACTCCAAAA CCATCCCCACTACATTTTTTAACCTTGGAGCAATAGAAATACTATCTTTA TTGGGATTTCAATAGGAATTTTTTATCCCCACTGAGGAAAAAAGTTTCAC CGAGGCTGTTTAGAAAGTGGTGTTTTAGAAAAAGAAATTTCCGATGGAAA AAGGAGAGAAAGTGTGCGCGATTGAAATCACTGTATCATTAATAATAAAC ACACTAAAAACTAATAAACAATAAATACACCTTTTCGACCCTAAAAACGT CCCAGTCTTTTTTTACTACAGTATTGTCTATAGGTGCGAAAAAAAAAGGA TTGGGACGGTTTTGGGTAGTAAAACGGACCAAAAAATGCCCGCACAGCAA TTGGTGGCTACGGTCAAAAAGGTGTATTTCCATATAAATATTCTGAATTT CATTATTCAGAACTTCCATTTATTTCATCATATGATCGATACCTTTTATT CCCTCGGTATAATGTAGCTAAAAAAGATGCCATGGGTACAGATTCAACGC AGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAGTCAAGAGAGA ATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAGTGGAGACCAA AGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACGCCATTAGCTA AATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAAGGTAAAAATT CATTTTTATTCATCCTTTTCTGATTCTGATACCACTTACGATAGACCTTT TCATAACTTACGTCAAGAACATCACTTGCCTCGTATTCAAACAATTACCA TGGTGATTATGTCCCTTGAGACATTAATTGATCTTTTTATGAATAAAAAG TAGTTTTATCAAAATCCGCTGGGAGTTAATCACCATGGCAATATTTTCAA AACGAGGCAAGTGATGTTCGTAACGTAATTTGTCTATTGTATATATCACA TCCATCAGTCAAATCAAAAAGTGGTGTATAAGTGGCTTTGGGTACGAGAT TGCATTCCCCTGGGAGGGATACTGTAGGCTATGATTGTCAAAATCCGAGA AAAGATTGGGTTTTCGAGGCGAGTTTACAGTTACCTTATTACACGAATAT TACTTGGCAAGTATTCAACGGCATCAATAAATAAATAAATTTTTGTTGCT TCTTGCCTGTGACCCATCCAAATATTCAAGCTTTAATATTCAACGGCCTT GAAATTAACACAATTTAAAATTGTTTTCTTCATTCATTCATCACCAGGCC ACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAGAAA CTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTGATG CTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACAGGT ACGAATAAATTCACATTTTAAGTCCAAACGTGTTGTTATTGACCAAACTC GTTCCCGGTCCCTTAGTTCGCTTTTAACTAATCTCGGTAGTGCTCACGAA AGTACCGACGCCCATCTGCCGTATGTATCACAGTCACTGTGAACATAAAA TGTGATAGCGAGCCGAGGTTAATTAATCAGAGACTAAAAAGTGACAACTG GTACAAGATCTTAAACCAATACCTAACCCTATTCTAGGGGCGGTTCAAAA CTAGGGGGGGGGCTGACCACCCCTTAACTTTTAATCTGGTGGGTCTTTTC GGATGAAATTTGGCACACAAGATCCTTGTCACATAAGTTAACTTTTGACA GGAAGTTTTTTTGACGATGTGACTCATCATGCCCAAAATGAGCAAAAACC GAAAATTTCCTTTGATCTTATAACTAGCTATTGTGATTTAACAAAGGCAC TAAGAACAATAAACGAGAATGCTTTTTCAAAACAATGAAAAATTAAATTG AATCTCGTCAATATATGAAGTGAAGGTAGAGAGTCTACCATCATGTTTCC CTAACACCCTGCCGGTTCTTGGGATTCGAACACAGCCCATTGCGGTGTAA GTTCGTGATCGAAATGTGCTTCCAGGTAGGGTTTAGGGAAATATTGTGAT AGACTCTCTACCTTCACTTATATATCACTCTCTCTCTCTCTCTCACTCTG GCTGATAATCGAAATGAGCTTAGTAAAGCTCAAATTGTAGATGTAGAACG ATAAACTCGGTAGACATTTTATCATTAACATAATTGTTAACTAAATTTAG AATAATTTAACTCTGGCAATGGAATCTTGTTTTTGAGAATCTTGAGTGGA AGTTCTTTCATGAAATACAGATTTTAGCTCTTGAAGGAGCTGAAAGAAAG TGCTGTAATCGTAATGAGTATTCATTGTCCGTTTGGAAATTCAGGGTCTT AATTATCACAATTTTTTTCAATGCATTTTGTCATAGTTACCTCAAAAACT GTTATTTATTCTTTAAACAGGTCACACGGTGAATACACAAGCTTCTGGTG TTCGAATCATGTCCCCAGAGATTGCTGACATTGAAGGTATCATTAGACAA CGATATCCCATCATGCCCATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001122XLOC_001122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002150-exon-sc0000018-1575043694:633262..633280TCONS_00002150-exon-sc0000018-1575043694:633262..633280Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1575043694:631896..632151TCONS_00002150-exon-sc0000018-1575043694:631896..632151Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1575043694:631426..631626TCONS_00002150-exon-sc0000018-1575043694:631426..631626Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1575043694:629840..630063TCONS_00002150-exon-sc0000018-1575043694:629840..630063Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1575043694:629133..629283TCONS_00002150-exon-sc0000018-1575043694:629133..629283Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1575043694:628009..628110TCONS_00002150-exon-sc0000018-1575043694:628009..628110Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1510915933:633262..633280TCONS_00002150-exon-sc0000018-1510915933:633262..633280Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1510915933:631896..632151TCONS_00002150-exon-sc0000018-1510915933:631896..632151Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1510915933:631426..631626TCONS_00002150-exon-sc0000018-1510915933:631426..631626Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1510915933:629840..630063TCONS_00002150-exon-sc0000018-1510915933:629840..630063Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1510915933:629133..629283TCONS_00002150-exon-sc0000018-1510915933:629133..629283Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1510915933:628009..628110TCONS_00002150-exon-sc0000018-1510915933:628009..628110Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1491911889:633262..633280TCONS_00002150-exon-sc0000018-1491911889:633262..633280Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1491911889:631896..632151TCONS_00002150-exon-sc0000018-1491911889:631896..632151Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1491911889:631426..631626TCONS_00002150-exon-sc0000018-1491911889:631426..631626Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1491911889:629840..630063TCONS_00002150-exon-sc0000018-1491911889:629840..630063Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1491911889:629133..629283TCONS_00002150-exon-sc0000018-1491911889:629133..629283Clytia hemisphaericaexon
TCONS_00002150-exon-sc0000018-1491911889:628009..628110TCONS_00002150-exon-sc0000018-1491911889:628009..628110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:628009..633280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.0428781 0.0511539 0 0 0 1.15537e-08 0 0 0 0 0 0 0 0 0 0 0 0.0214755 0 0 0 0 0.00669321 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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