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TCONS_00002148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002148
Unique NameTCONS_00002148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002148 ID=TCONS_00002148|Name=TCONS_00002148|organism=Clytia hemisphaerica|type=transcript|length=974bp
GGATTATCCAAAATAGTTATGAATATCTTctcttgtattttttactgttg
ttgtagaaattttagataaatttaGAATTATGTGGAAATATTTTTGGCAA
AGGTTGTTCAATGGCAAGTTGTTGAATCAGTCATCATGCTTAAAACTTTT
GCAGGgagcttttgtaaacaaaggaaatttGGGATTATTGGAAGATGAGT
TTTAAAGGATATTGGCATTTCCaaagtattttagattttgtaaACTTTGC
ATCCTTTGATGACCTGGGTTTATTGCAAATACATATTTGATTTTTCAATA
TGCAAGATGAAACTAACAATCTCTTGATTatgaatattaagaaaagtgGA
CATTTTGTGGTTCACTCAACCACTGGACAGCcctggaaaaagaaaacaat
tgtATTTAATTCAattgacttcattttttttcaggtatcAAAGGTaaata
aaccaaaaaaatgGCACCAAGAGGTTATGAATATGAACTTGTCGGAGAAA
GTGCACAGAATATGGATTTAAAATGTCCAGTTTGTAAACATCTAATCAGG
GATTGTGTTGAATTACCATGTGCACATACAATGTGTAAAAATTGTGTGGA
TTTCATCTCCAACGAACAAGCTAAAAATGGCACACCCATAGATGAGGATG
ATGAAGAAGATACAGTGTGTCCGATTTGCGAAACAGTTTACNCTAACAAT
TTACATCCTCAAAAACAGTATTTCTGTTTCTTTGGCATTTTCCAACCCCG
TCTCATTTAAAGGAAGTgtcaaaattgagaaatttttttaaaactataTA
AACGACTTCCGATAATGACCCCGTCTAAACAGGTAGTCTAGGTGGAAAtc
taaatttgagcaaaaaaatatattcaaatttcaCAAATCTGAAAAGTTGA
CAGTTTCTAGTTTCTATATATTGATCGTTGTTTTCGCTAATTAgctacgt
ttttttataagaacatccaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00002148-protein

>TCONS_00002148-protein ID=TCONS_00002148-protein|Name=TCONS_00002148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MAPRGYEYELVGESAQNMDLKCPVCKHLIRDCVELPCAHTMCKNCVDFIS
NEQAKNGTPIDEDDEEDTVCPICETVYXNNLHPQKQYFCFFGIFQPRLI
Run BLAST on NCBI

transcript from alignment at sc0000018:608379..611312-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002148 ID=TCONS_00002148|Name=TCONS_00002148|organism=Clytia hemisphaerica|type=transcript|length=2934bp|location=Sequence derived from alignment at sc0000018:608379..611312- (Clytia hemisphaerica)
GGATTATCCAAAATAGTTATGAATATCTTCTCTTGTATTTTTTACTGTTG TTGTAGAAATTTTAGATAAATTTAGAATTATGTGGAAATATTTTTGGCAA AGGTTGTTCAATGGCAAGTTGTTGAATCAGTCATCATGCTTAAAACTTTT GCAGGGAGCTTTTGTAAACAAAGGAAATTTGGGATTATTGGAAGATGAGT TTTAAAGGATATTGGCATTTCCAAAGTATTTTAGATTTTGTAAACTTTGC ATCCTTTGATGACCTGGGTTTATTGCAAATACATATTTGATTTTTCAATA TGCAAGATGAAACTAACAATCTCTTGATTATGAATATTAAGAAAAGTGGA CATTTTGTGGTTCACTCAACCACTGGACAGCCCTGGAAAAAGAAAACAAT TGTATTTAATTCAATTGACTTCATTTTTTTTCAGGTATCAAAGGTAAATA AACCAAAAAAATGGCACCAAGAGGTTATGAATATGAACTTGTCGGAGAAA GTGCACAGAATATGGATTTAAAATGTCCAGTTTGTAAACATCTAATCAGG GATTGTGTTGAATTACCATGTGCACATACAATGTGTAAAAATTGTGTGGA TTTCATCTCCAACGAACAAGCTAAAAATGGCACACCCATAGATGAGTAAG TGAATTTAATTTGGTTTAACCCATTTACTGCCGAAATTAAAAATTTCACC TCTTGGAATTTCATCGTTGACTTTTAGAAGCTCCTGTATGTGGTCTCAGT TTTGCTTAATTTTTACAAATTCAATAAAAAAGTTATTGCCCTTTGAAGTA CTGCCAGTTATCGATAAAATTGTTTTTCTGAAGGGATACATTAATGCACT TTTACTTACTGGTTCCGAATTCGATGTATCGAACATATCAAAGTATGAGG ATTGAAAATAACAGAGGAATAGCAATTTTCGGATAAGAACAGAAGGAAGT CTGAGTGTAAATAGAAAAGGTTTTCCCTTTTGTGTGGTTGCCATTAGAAA TTATTTCTGTTTTTCCCGGAAAATTTTCTACTTGGCAACAACAATAAATA TTGTAGATTTTCATGAAAACAAAATTACACGAAAGTTATGAAAAGTTATA TCTTCTAATTTTAAAACTAACACTTTAAAGAAAAAAATTAATATTTTGAA AAGTATTTTTAATTGCTAATTTACGGACCGGAATATCTTGATTAGCTTTT TTTTTTNTGATATTTTGAAAAGTATTTTTAATTGCTAATTTACGGACCGG AATATCTTGATTAGCTTTTTTTAAAAAAGTTTTAAACTTTTTAATGACTA TAACTATTGTGAAATGTCACTGGACTTCCTTATACCAATTTCGCGGTTTT TTTTCTTATAACAGGAGGGCAGTATTTTTCTTGTTCATTAAATTGACTTA ATATGTAATTAATTACGCAACGGGGAAATTTCAATTAAATTAGCGATGAT TAAAGCATTTGCACAAGATACAAAAATATTGACATAGAAGCAAAATCATC AAGTGAAATTTCAATATTGAACGATAGCGAAATCTATTTCACAAAATTCT GACCCAGTTCAATATATTCTTTCTAAGTCTGAAAGATCAATATACATTTA AAAGATATGATTTCTCTGATCTGATATATTTTCAAGAGACACCGATGTTA TGAGAAAATACCTTGTAAAAAATTGTCACCAACCTAACCAATTAAGCTTG ACTTATTGAATTGAAACCAAGGTTGTCTATGAACACCCCCTGGGAAAATT CCAAAACCTATAATTCAAACAATTATTTTAGCACAACCCCTCATAATACT GCATACAAAGTAACCTTATCTAAAATGCCTCATTAATGGACTATTAAGCT GCAATCAAACTTCAGTTTGAAAGGACTGAGTATCCAAAATAATGATGTTC GGATGTTCTTAACTTTTTGAGTTTCAAGCCTAAAAATGTTCTCAACCTGT TCTCACCATTTTAGAGTATTTTTGTGCAATTCCCTAAAAAGACTCGGGTG TTTTAGAATCCACAAAGACTTCTGATCTTGTTCTTAAATTGTTCTTAATA TCATGGCCATCGAAGCCTTATTCTCTTATTCATAGACCCGACAGTTGATT GATTGTAAGTGACATTTAGCCTGTCAATAAGGCACTAGCAACAAATCAGC TGTTATTTCCGTAATGTAATGTCAGAATACATTGTAATGGTGCATATCAT GATCATAGTTTGTTCTTATGAAAAAACGAGGATAAACTCAAGGCCCTGAG CAGATGAGCTGATAGGGCCCCGGGGGGGGGGGGGCTCAAGGCAAATGACC TAACATGCATGCGGCCCTTAAGGGTATACTTTCCAAGCTTTCCAAAGTGC ACTGTAAGGGTTGAAATCAGCATAGATGAGATGAATTGTACTCTAAGGAT ATAGACTTTGGAAAATCTGACCATATTCTGCCTAAAAATGGTGAAGAAAA TTCCAAGAAAAAGCACCGTAAGGGTCGATTTTTGCCCAAATTTTGCAAAC TTTTCTCTGCACTGTAAGGGTCCGATTTCAAAGGCCTAATTTTGTGCCAC ACGTATGGGCGCTTTTTTTTATAGCATTAACAACAACTTGTATATTTCTC TCCAGGGATGATGAAGAAGATACAGTGTGTCCGATTTGCGAAACAGTTTA CNCTAACAATTTACATCCTCAAAAACAGTATTTCTGTTTCTTTGGCATTT TCCAACCCCGTCTCATTTAAAGGAAGTGTCAAAATTGAGAAATTTTTTTA AAACTATATAAACGACTTCCGATAATGACCCCGTCTAAACAGGTAGTCTA GGTGGAAATCTAAATTTGAGCAAAAAAATATATTCAAATTTCACAAATCT GAAAAGTTGACAGTTTCTAGTTTCTATATATTGATCGTTGTTTTCGCTAA TTAGCTACGTTTTTTTATAAGAACATCCAAAAAT

Coding sequence (CDS) from alignment at sc0000018:608379..611312-

>TCONS_00002148 ID=TCONS_00002148|Name=TCONS_00002148|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000018:608379..611312- (Clytia hemisphaerica)
GGATGATGAAGAAGATACAGTGTGTCCGATTTGCGAAACAGTTTACNCTA
ACAATTTACATCCTCAAAAACAGTATTTCTGTTTCTTTGGCATTTTCCAA
CCCCGTCTCATTTAAATGGCACCAAGAGGTTATGAATATGAACTTGTCGG
AGAAAGTGCACAGAATATGGATTTAAAATGTCCAGTTTGTAAACATCTAA
TCAGGGATTGTGTTGAATTACCATGTGCACATACAATGTGTAAAAATTGT
GTGGATTTCATCTCCAACGAACAAGCTAAAAATGGCACACCCATAGATGA
GGATGATGAAGAAGATACAGTGTGTCCGATTTGCGAAACAGTTTACNCTA
ACAATTTACATCCTCAAAAACAGTATTTCTGTTTCTTTGGCATTTTCCAA
CCCCGTCTCATTTAAATGGCACCAAGAGGTTATGAATATGAACTTGTCGG
AGAAAGTGCACAGAATATGGATTTAAAATGTCCAGTTTGTAAACATCTAA
TCAGGGATTGTGTTGAATTACCATGTGCACATACAATGTGTAAAAATTGT
GTGGATTTCATCTCCAACGAACAAGCTAAAAATGGCACACCCATAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001121XLOC_001121Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002148-proteinTCONS_00002148-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002148-exon-sc0000018-1575043694:610668..611312TCONS_00002148-exon-sc0000018-1575043694:610668..611312Clytia hemisphaericaexon
TCONS_00002148-exon-sc0000018-1575043694:608379..608707TCONS_00002148-exon-sc0000018-1575043694:608379..608707Clytia hemisphaericaexon
TCONS_00002148-exon-sc0000018-1510915933:610668..611312TCONS_00002148-exon-sc0000018-1510915933:610668..611312Clytia hemisphaericaexon
TCONS_00002148-exon-sc0000018-1510915933:608379..608707TCONS_00002148-exon-sc0000018-1510915933:608379..608707Clytia hemisphaericaexon
TCONS_00002148-exon-sc0000018-1491911889:610668..611312TCONS_00002148-exon-sc0000018-1491911889:610668..611312Clytia hemisphaericaexon
TCONS_00002148-exon-sc0000018-1491911889:608379..608707TCONS_00002148-exon-sc0000018-1491911889:608379..608707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:608379..611312 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0463761 0 0.0525094 0 0.312704 0.148262 1.19248 1.33966 3.63447 2.61399 0.516838 4.09881 14.1571 9.70542 9.63821 5.51076 0.55703 5.31686 0 0.0515877 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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