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TCONS_00002147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002147
Unique NameTCONS_00002147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002147 ID=TCONS_00002147|Name=TCONS_00002147|organism=Clytia hemisphaerica|type=transcript|length=2105bp
TGCTAAGGAATAAGAAGTCAAAAAATGGTGAAGGAAAGCAAGGCAATGGA
CCGAATCATATTGACATCAGTGAAAATCAAATGTTTACAAGCACAATTAG
GATGTGATTGGCAAGGTGAACTATCCTCAGTTGAGaaacacgAGGAGAAA
TGTAAATACAAGTCTATCCAATGTTCGAATAAAGGATGTCGTTCAGAAAT
GATGAGAATGAACTTACTAAAACATTTGAATAATTGTCAATATCAAATTG
TTGCATGTGAATTTTGTGCAACTAAAGTACCACAAATTGATATGGAGGAC
CATCGCATAGACTGTGACTTTTGTCCGAAGAAATGTCCAAATGAAAACTG
CCAAGTCAAAATTAGAAATACAGAGCTTGATGCACATTTGGAGCAAGATT
GCCAATATGAGCCAGTGGAATGCAGATATAGCGCATTTGGTTGTGAAGAT
AAGATAAAACGAATCGATATGAAGCTCCACTTGGATGAATCAGTACACGA
TCACATGTCATTACTTTTCAAGAGTAACCAAGACCTTGAGAAATCTCATC
GAGAAACAAAACAGGAGTTAGATGATGCTCAAcaacgattggtcaaaaca
acAATGGTGTTGAAAGAATTCAATGAAATGTTGAATCAAACACGACGAGA
GCTTGAAGCAACAAAACGTGAATTTGCAGCATTCAGAAAGGAGACATCTG
AGAAAATAGCTGAACAAGATGCACAATTGGAGAAATACAAGAATCAACCA
AGAGCTCCTACACCAACCAGAATTGAGCCTCTGAAATCACCACGTGATAG
TCCAGTCTCCAAGAGCCCAAGGCAAAGTCCAGAACCAGGCACCAATATCC
CAATCGGTCGCAAGTCACCAGAGCCTGTTAAGGAGCGAAGAACACCTTCT
CCAACATCAGATGACAAAAAAGGAGGAATCTTAAAGAAAGCGAAATCAGC
TGACAACTTAACAACAGCTGGACGTAGCAGCTCACCTGTcacattgaaat
tattcttaaaGAAATCTGATTCTCCTATTAACGTTACACGTTCAGATTCG
AACGCGTCTTCTAGTTCCTCGTCATCGGCCGGCTCCACCAACCCGCCGCC
TCCTCAAATCGTTTCCAAGAACCCGCTTTCTCCATTGACTCCTTTGTCAC
CAATGTCACCAACAAAGCGCGTCTCTCCTCCACCACCAGGAGCCAAGGAT
TTACCAGACGAGCCAAGAAGCCCACAAAACGGCGAAACCACGTTACAAAG
AAAACGCCAAGCCGCCATTAAGCCTATTATTACACGCCCATCGACGCCAC
TTCAATCGATAATCGACGCGATGAATAATTCACCCATTAATGATTATCCA
CAACATTTCCACGCCATGATGCAGAATATGGAACCAGATCGATTCTACGT
TGTCAACGGTGATCTTCTCATCAAGGTCAATACGTTCGGATCGTTACGTC
CGTACGCTGTCGTTTACGTGCAACCGTGGGAAGAACGTAGCCGTAAAGTC
TTCCAAGAAATGCGTTTAAACAAACGTACAAAACATCACAGCGAACGTGT
CTGTATTGAAGCTAACTCACAAGTTGGAATTGTCAAACTTCTTGTTAATT
GCACTTTGCAAGACACAATCGTATCCGTTGTTTGTACACAACAAAACACA
GCTTTTCTTCCCTCCTATATCGAAACTATGGGATGGGGCTTCCAAGTACC
TGCTGGATTACACAGAAACGCATTTTTCCATCAAGAAAATATGTTGTTGA
GACTCAGACAACGTATTCCAGATGTTGAGAGAATGGCAGCTGGTATGTAA
ATAAACGAACACTTTTTATAATACGAATTTGGGACAAAGTCTTACAATAT
TGTGACTATGGTATTATTTTTTCTCctatgtattttttttaaagaaaaat
gacatttttttattgcatgatttatattttatttttggatttttattttt
taacaaacaatGTGTAAATACTTTTCTTTCTTACCTTTTTACTAATTGCT
GGCAATAATGatgatttttataaatatgattttgaacCGAAGCAGGGTCT
AAGCTAGCAACAGTGTTCTCAAAATacctactcttgtctcccgaatagac
gtccc
Run BLAST on NCBI

protein sequence of TCONS_00002147-protein

>TCONS_00002147-protein ID=TCONS_00002147-protein|Name=TCONS_00002147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
MVKESKAMDRIILTSVKIKCLQAQLGCDWQGELSSVEKHEEKCKYKSIQC
SNKGCRSEMMRMNLLKHLNNCQYQIVACEFCATKVPQIDMEDHRIDCDFC
PKKCPNENCQVKIRNTELDAHLEQDCQYEPVECRYSAFGCEDKIKRIDMK
LHLDESVHDHMSLLFKSNQDLEKSHRETKQELDDAQQRLVKTTMVLKEFN
EMLNQTRRELEATKREFAAFRKETSEKIAEQDAQLEKYKNQPRAPTPTRI
EPLKSPRDSPVSKSPRQSPEPGTNIPIGRKSPEPVKERRTPSPTSDDKKG
GILKKAKSADNLTTAGRSSSPVTLKLFLKKSDSPINVTRSDSNASSSSSS
SAGSTNPPPPQIVSKNPLSPLTPLSPMSPTKRVSPPPPGAKDLPDEPRSP
QNGETTLQRKRQAAIKPIITRPSTPLQSIIDAMNNSPINDYPQHFHAMMQ
NMEPDRFYVVNGDLLIKVNTFGSLRPYAVVYVQPWEERSRKVFQEMRLNK
RTKHHSERVCIEANSQVGIVKLLVNCTLQDTIVSVVCTQQNTAFLPSYIE
TMGWGFQVPAGLHRNAFFHQENMLLRLRQRIPDVERMAAGM
Run BLAST on NCBI

transcript from alignment at sc0000018:600947..606993-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002147 ID=TCONS_00002147|Name=TCONS_00002147|organism=Clytia hemisphaerica|type=transcript|length=6047bp|location=Sequence derived from alignment at sc0000018:600947..606993- (Clytia hemisphaerica)
TGCTAAGGAATAAGAAGTCAAAAAATGGTAACTTGAATTTATTTTTCAGA GAATTTATAAAAATTGAATTGCTGAGAAAAATTCGTTTTCGTATTAGATT GGGTTTATAGTTATCGTAGATTTGGGTTTTTAAAACACAGAAAATGAAGA TGAAATTTCTTGAAATTTTGATAATTCTTTTTGCTCACTGTAGGTGAAGG AAAGCAAGGCAATGGACCGAATCATATTGACATCAGTGAAAATCAAATGT TTACAAGCACAATTAGGATGTGATTGGCAAGGTGAACTATCCTCAGTTGA GGTAAGAAGAACAGACTTTTCAGGGTGTGTCCCCGAAAATGTACTCTATA ACCAGAGTGTATCTCACGTTTATCGTTTCGTAGTACCTAGTAACTCTACG GCAATGAATTTTGAAATCAGCCGTAGATATTGGGTCTGTGTACAGACTAC CGAAAATGATGTAACGAGTCCAACCACTGGAGAATTCTTAATGTGTCTCA ATGAATTCTACAGACATATTTTTCTATGTCATTTTAGAGAATTGATTTGA TGAGAAATATGTTTTAGAAAGTCTATGCACTCAAAAGCTTATGGACGAAA CATTTTTCACCGAACACCTTGATTGTGATTTTAATATTTGATTCGACTAC ATTGATGCCACGAGAAACTATGCTTAGAATTCCTTTCCCAGTCACAGGTT AAGTAACTCATAAATGACTAGACTGTCAATATAAGCTAGATAATATTAAC TAATACATAGCTACTGAAGAAGGTCTCTTGCCGTAAACTCTATTTGATTC TTCCAGATTCATTCGAAATATACGTCACTATTGACTTGTTGGAAAGATAT CTATGAGTGGTAAAAGTGACTTCAATGAAATGTCGTTTTTTTTTTAGAAA CACGAGGAGAAATGTAAATACAAGTCTATCCAATGTTCGAATAAAGGATG TCGTTCAGAAATGATGAGAATGAACTTACTAAAACATTTGAATAATTGTC AATATCAAATTGTTGCATGTGAATTTTGTGCAACTAAAGTACCACAAATT GATATGGAGGTATGGTTGATTCCTTTCTACTATATTTACTGTATTTTTAA GCATCTCCTCTGCCCATCGGGTACAAGAACAATAGCCCTATGTTTTGAAG AATCTTAAGTCCAGTCTGGCCAAGAGAAAGTCCTTCGCTCGAGAGGAAAA AACTGTTGAGTTGAGGGGGATTTTTCCTTGTTTTTGTATGTTTTTTCTTT GCAACTTGCAAGTCTAGTAGGTTGATGCAAAAGAATATCTTCTTCAAATT TAAAACAATGCCTAGGAATTCTGATTTTGCTGACGCGTGATAAATAAACG ATAAATTCAGCTGGGACACCCGGAGAAAGAATTTATGATGATAACAGTCC AAAATTTAATTTGAAAAACATGAAAAATCTTCATTAAAATACAAAATAAT TTTCCTGACGAGTGATTAGCACACTAATGTTTAATTAACAGTTGTAAAAA GAGAGTACAATGGAAAAAGCAGATTAACTTAATTAAATACCTAATTATAT GTGGGCGACTGTTTAAGGGAATAATATCATATTTCTCGGCTGTTTTATTA AAGCTGTATCTAGCTGTCTTCTATTGTATTTCATTTGATTACATAAGCTA ATTTCCTGGACAAGTGATTTTTCGATGACGAGTCATATTATTGTATTTGT ACAAAACGACTCATTAATTAATTTGTTGATATTTGCTTTCTTGAGATTTA TAGTTCCTGTAACTAACCAGGGTTTCTTAGTGTTACTGATCTTTAATATT ATACATGGCGCGTCTCGTAAGCTTCAATCTTAATCCCCAATATTGTAAAC TTCCTTGATATAAAGTCTCATCAAATGAGATTTCTAAAGTCTACCTGTGA TTTCGTCTGTTACACGTTTTTTTAGAAAGAACATTTTTGAAGCCTTCGGA TTTTCTGAACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAAGATATGTT CTTAAGATGTTCTTATTAAATTGACCATTTTGTGAATATCTTTTACCATA TTGCTAAGAAATTTTTTTGAGTCCACAAAGCCTTAAAATGATCTTAACTT GTTCTTAACATAAGCCTTATGTTCTTACATAGTTTGTTCTTACAAAAAAA CGTTCGTATTGCTTGCATTGTATGTGATTTTAAAGTGTTTTGAAAGAATA CTTATCATAAGGAAAGTTACTGCCATTACAGCATTCGAAAACCCTAGTTT ATGAAACTGTCTAGTGTATTGACAGCTACGCCCAAGTTTCAAATCACAAA TCATACAAATAATTTTTCACAGTTGAAGAATTTTTCAAAATTTCAAATGT TGAATTCTAACTTTTATTCTTTTTAGGACCATCGCATAGACTGTGACTTT TGTCCGAAGAAATGTCCAAATGAAAACTGCCAAGTCAAAATTAGAAATAC AGAGGTAGTTATTGATGATGTATTTCTATAACAACAGCAATACTTTTAAT TGTTTTTCAGAATAATTATGATAGCTGGCATACCTTGGTTTAAATGCCCA AAATAAATAAAGGGCAATATTGTGCTGTCTATTCTTGGCACTATTAAGTA TTGTAAAGAAATTTGAGGCATTTTAACAAAGAGCATCTCTACTACATTTG GTCTTTGTTATTAAGAGCTGATGTGGCCATTGAGTGGTGAGAGCTGCTAG CATCGAAAAAAGGTAATTTTATTACGTTTTTGTTTTTCTTTAACATAGCT TGATGCACATTTGGAGCAAGATTGCCAATATGAGCCAGTGGAATGCAGAT ATAGCGCATTTGGTTGTGAAGATAAGGTAAATTGAAATAATACGTTTAGT AGATCCTCTTCCTCGCGCGAGGGGGTCTATCTAACAAATCCTGCATTACT AAAAATAGACAAATTTCATAAAGAAGGACAAACAAGAACGACAAATTTCA TAGTTTGCCGTCTACAACCCCGACCAAAAGTGGCTGTACCACCCCTACAG ATTCTTCTTTGTTTATCACTGGAATTAACTACATGTGGTTTAAAAGAACG ACAATTTACGCATGCGTGTTATTCATGCAGGAATTACAAGACGAACCTAC TGACGTACATGATAGTGACATTTTAATACTCAGTTTGAACTGACCAATAA CAAACTTGGAATTAAATTAACTTAACTAAAGAAGAGAAATTTAAAATTCA TTAAGGTTAAATTCTACAACAAATCGGGAACATTTTTGGCTCGTTTTTTT CAAATCACCCTTAACTTTAAAATCCCGCCGATGAAAATGCCAAAACTTAG ATTCCTTAAAAATCTGTATAAACACAGGCAAGTCAAATGCAATTGAAGTG TATTAGTAGTCGCCAGTGGAATTTAAACTACAGTAGGTCATTGCCATCGG AGACGGTTGTGTGCATACATATCAATATTAACTTTTCCTAGTAACCCACT GGTTACCTTTTAACAAAAAGGAAAATGAAAATGAAGGAGAAATCTCATTA TTATAGTCTTAAAACCTGGTTTTTAGACAACTTCCTTATGTGTGTTTAGA ATAGTCTAATCTGGATTTAAGCTTAAAACAACCGGCCGTCGAATGGATGT TGAAAAGACGACGAAAGAGGATGTGTTAATATAAGACTGAAAACAATGTG AAACATTGGAAATGAACTCTTTAATCTATATATCTTTATTTCTTGACCTG CTTATATAATTACAAAATAGATGTAATTAAGTACAGATCAAAAATATATT GTATTGTCAAACAACACCGTACTGTTGTCAACGGTTTCCAAGGCTAAACT AATTGATCAAATTGATTCGAAAAGGAAATTATTTTGTCGCATCTATTCTC TTTCATTCAATGAAAACAAGTTATATAGAAGATTTCGTGTTTACTGTTTC AATCTAAGGAATTTCAGCTTATCCTTTCCCCATAATCCCTTGAAAAAAAA CTATAAAGCAAGATACAATACTTAATTTCCAATCAGTTGATTTTGTAACC TAATTGCATTAATTTGACACAGTAAGAATATAACTTCATTTTTACAGAGG TATGATAGAAATAGTTTATGGGGCAATTTAATTTGTTTTCTTTTTTTTTT GTTGACGATGTATAAATTTCTTAATTAGCAGGATGACTAAATGAAGAGAA AGACAATTTTGAAATTTTCTGTCATGAAAACAATTTTCTCAAATTAGAAA AAAAGCTGAGTGGGGTTTGTGGTATACAGCTTTAGAAACCTTCTTTGATC GACGTTTTCTGGAAAACAGTTAGTGGAAATTCTAGCGATACTTCGTTCAA GTTAAACAAAGTGCTTTCTTCGTGTGTGATTATAATCAACTTTGAATAGC AATTCAGATAGCAATTTTTTAAATATTTTTCTTGTTCTACTACAGATAAA ACGAATCGATATGAAGCTCCACTTGGATGAATCAGTACACGATCACATGT CATTACTTTTCAAGAGTAACCAAGACCTTGAGAAATCTCATCGAGAAACA AAACAGGAGTTAGATGATGCTCAACAACGATTGGTCAAAACAACAATGGT GTTGAAAGAATTCAATGAAATGTTGAATCAAACACGACGAGAGCTTGAAG CAACAAAACGTGAATTTGCAGCATTCAGAAAGGAGACATCTGAGAAAATA GCTGAACAAGATGCACAATTGGAGAAATACAAGAATCAACCAAGAGCTCC TACACCAACCAGAATTGAGCCTCTGAAATCACCACGTGATAGTCCAGTCT CCAAGAGCCCAAGGCAAAGTCCAGAACCAGGCACCAATATCCCAATCGGT CGCAAGTCACCAGAGCCTGTTAAGGAGCGAAGAACACCTTCTCCAACATC AGATGACAAAAAAGGAGGAATCTTAAAGAAAGCGAAATCAGCTGACAACT TAACAACAGCTGGACGTAGCAGCTCACCTGTCACATTGAAATTATTCTTA AAGAAATCTGATTCTCCTATTAACGTTACACGTTCAGATTCGAACGCGTC TTCTAGTTCCTCGTCATCGGCCGGCTCCACCAACCCGCCGCCTCCTCAAA TCGTTTCCAAGAACCCGCTTTCTCCATTGACTCCTTTGTCACCAATGTCA CCAACAAAGCGCGTCTCTCCTCCACCACCAGGAGCCAAGGATTTACCAGA CGAGCCAAGAAGCCCACAAAACGGCGAAACCACGTTACAAAGAAAACGCC AAGCCGCCATTAAGCCTATTATTACACGCCCATCGACGCCACTTCAATCG ATAATCGACGCGATGAATAATTCACCCATTAATGATTATCCACAACATTT CCACGCCATGATGCAGAATATGGAACCAGATCGATTCTACGTTGTCAACG GTGATCTTCTCATCAAGGTCAATACGTTCGGATCGTTACGTCCGTACGCT GTCGTTTACGTGCAACCGTGGGAAGAACGTAGCCGTAAAGTCTTCCAAGA AATGCGTTTAAACAAACGTACAAAACATCACAGCGAACGTGTCTGTATTG AAGCTAACTCACAAGTTGGAATTGTCAAACTTCTTGTTAATTGCACTTTG CAAGACACAATCGTATCCGTTGTTTGTACACAACAAAACACAGCTTTTCT TCCCTCCTATATCGAAACTATGGGATGGGGCTTCCAAGTACCTGCTGGAT TACACAGAAACGCATTTTTCCATCAAGAAAATATGTTGTTGAGACTCAGA CAACGTATTCCAGATGTTGAGAGAATGGCAGCTGGTATGTAAATAAACGA ACACTTTTTATAATACGAATTTGGGACAAAGTCTTACAATATTGTGACTA TGGTATTATTTTTTCTCCTATGTATTTTTTTTAAAGAAAAATGACATTTT TTTATTGCATGATTTATATTTTATTTTTGGATTTTTATTTTTTAACAAAC AATGTGTAAATACTTTTCTTTCTTACCTTTTTACTAATTGCTGGCAATAA TGATGATTTTTATAAATATGATTTTGAACCGAAGCAGGGTCTAAGCTAGC AACAGTGTTCTCAAAATACCTACTCTTGTCTCCCGAATAGACGTCCC

Coding sequence (CDS) from alignment at sc0000018:600947..606993-

>TCONS_00002147 ID=TCONS_00002147|Name=TCONS_00002147|organism=Clytia hemisphaerica|type=CDS|length=10656bp|location=Sequence derived from alignment at sc0000018:600947..606993- (Clytia hemisphaerica)
ATAAAACGAATCGATATGAAGCTCCACTTGGATGAATCAGTACACGATCA
CATGTCATTACTTTTCAAGAGTAACCAAGACCTTGAGAAATCTCATCGAG
AAACAAAACAGGAGTTAGATGATGCTCAACAACGATTGGTCAAAACAACA
ATGGTGTTGAAAGAATTCAATGAAATGTTGAATCAAACACGACGAGAGCT
TGAAGCAACAAAACGTGAATTTGCAGCATTCAGAAAGGAGACATCTGAGA
AAATAGCTGAACAAGATGCACAATTGGAGAAATACAAGAATCAACCAAGA
GCTCCTACACCAACCAGAATTGAGCCTCTGAAATCACCACGTGATAGTCC
AGTCTCCAAGAGCCCAAGGCAAAGTCCAGAACCAGGCACCAATATCCCAA
TCGGTCGCAAGTCACCAGAGCCTGTTAAGGAGCGAAGAACACCTTCTCCA
ACATCAGATGACAAAAAAGGAGGAATCTTAAAGAAAGCGAAATCAGCTGA
CAACTTAACAACAGCTGGACGTAGCAGCTCACCTGTCACATTGAAATTAT
TCTTAAAGAAATCTGATTCTCCTATTAACGTTACACGTTCAGATTCGAAC
GCGTCTTCTAGTTCCTCGTCATCGGCCGGCTCCACCAACCCGCCGCCTCC
TCAAATCGTTTCCAAGAACCCGCTTTCTCCATTGACTCCTTTGTCACCAA
TGTCACCAACAAAGCGCGTCTCTCCTCCACCACCAGGAGCCAAGGATTTA
CCAGACGAGCCAAGAAGCCCACAAAACGGCGAAACCACGTTACAAAGAAA
ACGCCAAGCCGCCATTAAGCCTATTATTACACGCCCATCGACGCCACTTC
AATCGATAATCGACGCGATGAATAATTCACCCATTAATGATTATCCACAA
CATTTCCACGCCATGATGCAGAATATGGAACCAGATCGATTCTACGTTGT
CAACGGTGATCTTCTCATCAAGGTCAATACGTTCGGATCGTTACGTCCGT
ACGCTGTCGTTTACGTGCAACCGTGGGAAGAACGTAGCCGTAAAGTCTTC
CAAGAAATGCGTTTAAACAAACGTACAAAACATCACAGCGAACGTGTCTG
TATTGAAGCTAACTCACAAGTTGGAATTGTCAAACTTCTTGTTAATTGCA
CTTTGCAAGACACAATCGTATCCGTTGTTTGTACACAACAAAACACAGCT
TTTCTTCCCTCCTATATCGAAACTATGGGATGGGGCTTCCAAGTACCTGC
TGGATTACACAGAAACGCATTTTTCCATCAAGAAAATATGTTGTTGAGAC
TCAGACAACGTATTCCAGATGTTGAGAGAATGGCAGCTGGTATGTAACTT
GATGCACATTTGGAGCAAGATTGCCAATATGAGCCAGTGGAATGCAGATA
TAGCGCATTTGGTTGTGAAGATAAGGACCATCGCATAGACTGTGACTTTT
GTCCGAAGAAATGTCCAAATGAAAACTGCCAAGTCAAAATTAGAAATACA
GAGAAACACGAGGAGAAATGTAAATACAAGTCTATCCAATGTTCGAATAA
AGGATGTCGTTCAGAAATGATGAGAATGAACTTACTAAAACATTTGAATA
ATTGTCAATATCAAATTGTTGCATGTGAATTTTGTGCAACTAAAGTACCA
CAAATTGATATGGAGGTGAAGGAAAGCAAGGCAATGGACCGAATCATATT
GACATCAGTGAAAATCAAATGTTTACAAGCACAATTAGGATGTGATTGGC
AAGGTGAACTATCCTCAGTTGAGATGATAAAACGAATCGATATGAAGCTC
CACTTGGATGAATCAGTACACGATCACATGTCATTACTTTTCAAGAGTAA
CCAAGACCTTGAGAAATCTCATCGAGAAACAAAACAGGAGTTAGATGATG
CTCAACAACGATTGGTCAAAACAACAATGGTGTTGAAAGAATTCAATGAA
ATGTTGAATCAAACACGACGAGAGCTTGAAGCAACAAAACGTGAATTTGC
AGCATTCAGAAAGGAGACATCTGAGAAAATAGCTGAACAAGATGCACAAT
TGGAGAAATACAAGAATCAACCAAGAGCTCCTACACCAACCAGAATTGAG
CCTCTGAAATCACCACGTGATAGTCCAGTCTCCAAGAGCCCAAGGCAAAG
TCCAGAACCAGGCACCAATATCCCAATCGGTCGCAAGTCACCAGAGCCTG
TTAAGGAGCGAAGAACACCTTCTCCAACATCAGATGACAAAAAAGGAGGA
ATCTTAAAGAAAGCGAAATCAGCTGACAACTTAACAACAGCTGGACGTAG
CAGCTCACCTGTCACATTGAAATTATTCTTAAAGAAATCTGATTCTCCTA
TTAACGTTACACGTTCAGATTCGAACGCGTCTTCTAGTTCCTCGTCATCG
GCCGGCTCCACCAACCCGCCGCCTCCTCAAATCGTTTCCAAGAACCCGCT
TTCTCCATTGACTCCTTTGTCACCAATGTCACCAACAAAGCGCGTCTCTC
CTCCACCACCAGGAGCCAAGGATTTACCAGACGAGCCAAGAAGCCCACAA
AACGGCGAAACCACGTTACAAAGAAAACGCCAAGCCGCCATTAAGCCTAT
TATTACACGCCCATCGACGCCACTTCAATCGATAATCGACGCGATGAATA
ATTCACCCATTAATGATTATCCACAACATTTCCACGCCATGATGCAGAAT
ATGGAACCAGATCGATTCTACGTTGTCAACGGTGATCTTCTCATCAAGGT
CAATACGTTCGGATCGTTACGTCCGTACGCTGTCGTTTACGTGCAACCGT
GGGAAGAACGTAGCCGTAAAGTCTTCCAAGAAATGCGTTTAAACAAACGT
ACAAAACATCACAGCGAACGTGTCTGTATTGAAGCTAACTCACAAGTTGG
AATTGTCAAACTTCTTGTTAATTGCACTTTGCAAGACACAATCGTATCCG
TTGTTTGTACACAACAAAACACAGCTTTTCTTCCCTCCTATATCGAAACT
ATGGGATGGGGCTTCCAAGTACCTGCTGGATTACACAGAAACGCATTTTT
CCATCAAGAAAATATGTTGTTGAGACTCAGACAACGTATTCCAGATGTTG
AGAGAATGGCAGCTGGTATGTAACTTGATGCACATTTGGAGCAAGATTGC
CAATATGAGCCAGTGGAATGCAGATATAGCGCATTTGGTTGTGAAGATAA
GGACCATCGCATAGACTGTGACTTTTGTCCGAAGAAATGTCCAAATGAAA
ACTGCCAAGTCAAAATTAGAAATACAGAGAAACACGAGGAGAAATGTAAA
TACAAGTCTATCCAATGTTCGAATAAAGGATGTCGTTCAGAAATGATGAG
AATGAACTTACTAAAACATTTGAATAATTGTCAATATCAAATTGTTGCAT
GTGAATTTTGTGCAACTAAAGTACCACAAATTGATATGGAGGTGAAGGAA
AGCAAGGCAATGGACCGAATCATATTGACATCAGTGAAAATCAAATGTTT
ACAAGCACAATTAGGATGTGATTGGCAAGGTGAACTATCCTCAGTTGAGA
TGATAAAACGAATCGATATGAAGCTCCACTTGGATGAATCAGTACACGAT
CACATGTCATTACTTTTCAAGAGTAACCAAGACCTTGAGAAATCTCATCG
AGAAACAAAACAGGAGTTAGATGATGCTCAACAACGATTGGTCAAAACAA
CAATGGTGTTGAAAGAATTCAATGAAATGTTGAATCAAACACGACGAGAG
CTTGAAGCAACAAAACGTGAATTTGCAGCATTCAGAAAGGAGACATCTGA
GAAAATAGCTGAACAAGATGCACAATTGGAGAAATACAAGAATCAACCAA
GAGCTCCTACACCAACCAGAATTGAGCCTCTGAAATCACCACGTGATAGT
CCAGTCTCCAAGAGCCCAAGGCAAAGTCCAGAACCAGGCACCAATATCCC
AATCGGTCGCAAGTCACCAGAGCCTGTTAAGGAGCGAAGAACACCTTCTC
CAACATCAGATGACAAAAAAGGAGGAATCTTAAAGAAAGCGAAATCAGCT
GACAACTTAACAACAGCTGGACGTAGCAGCTCACCTGTCACATTGAAATT
ATTCTTAAAGAAATCTGATTCTCCTATTAACGTTACACGTTCAGATTCGA
ACGCGTCTTCTAGTTCCTCGTCATCGGCCGGCTCCACCAACCCGCCGCCT
CCTCAAATCGTTTCCAAGAACCCGCTTTCTCCATTGACTCCTTTGTCACC
AATGTCACCAACAAAGCGCGTCTCTCCTCCACCACCAGGAGCCAAGGATT
TACCAGACGAGCCAAGAAGCCCACAAAACGGCGAAACCACGTTACAAAGA
AAACGCCAAGCCGCCATTAAGCCTATTATTACACGCCCATCGACGCCACT
TCAATCGATAATCGACGCGATGAATAATTCACCCATTAATGATTATCCAC
AACATTTCCACGCCATGATGCAGAATATGGAACCAGATCGATTCTACGTT
GTCAACGGTGATCTTCTCATCAAGGTCAATACGTTCGGATCGTTACGTCC
GTACGCTGTCGTTTACGTGCAACCGTGGGAAGAACGTAGCCGTAAAGTCT
TCCAAGAAATGCGTTTAAACAAACGTACAAAACATCACAGCGAACGTGTC
TGTATTGAAGCTAACTCACAAGTTGGAATTGTCAAACTTCTTGTTAATTG
CACTTTGCAAGACACAATCGTATCCGTTGTTTGTACACAACAAAACACAG
CTTTTCTTCCCTCCTATATCGAAACTATGGGATGGGGCTTCCAAGTACCT
GCTGGATTACACAGAAACGCATTTTTCCATCAAGAAAATATGTTGTTGAG
ACTCAGACAACGTATTCCAGATGTTGAGAGAATGGCAGCTGGTATGTAAC
TTGATGCACATTTGGAGCAAGATTGCCAATATGAGCCAGTGGAATGCAGA
TATAGCGCATTTGGTTGTGAAGATAAGGACCATCGCATAGACTGTGACTT
TTGTCCGAAGAAATGTCCAAATGAAAACTGCCAAGTCAAAATTAGAAATA
CAGAGAAACACGAGGAGAAATGTAAATACAAGTCTATCCAATGTTCGAAT
AAAGGATGTCGTTCAGAAATGATGAGAATGAACTTACTAAAACATTTGAA
TAATTGTCAATATCAAATTGTTGCATGTGAATTTTGTGCAACTAAAGTAC
CACAAATTGATATGGAGGTGAAGGAAAGCAAGGCAATGGACCGAATCATA
TTGACATCAGTGAAAATCAAATGTTTACAAGCACAATTAGGATGTGATTG
GCAAGGTGAACTATCCTCAGTTGAGATGATAAAACGAATCGATATGAAGC
TCCACTTGGATGAATCAGTACACGATCACATGTCATTACTTTTCAAGAGT
AACCAAGACCTTGAGAAATCTCATCGAGAAACAAAACAGGAGTTAGATGA
TGCTCAACAACGATTGGTCAAAACAACAATGGTGTTGAAAGAATTCAATG
AAATGTTGAATCAAACACGACGAGAGCTTGAAGCAACAAAACGTGAATTT
GCAGCATTCAGAAAGGAGACATCTGAGAAAATAGCTGAACAAGATGCACA
ATTGGAGAAATACAAGAATCAACCAAGAGCTCCTACACCAACCAGAATTG
AGCCTCTGAAATCACCACGTGATAGTCCAGTCTCCAAGAGCCCAAGGCAA
AGTCCAGAACCAGGCACCAATATCCCAATCGGTCGCAAGTCACCAGAGCC
TGTTAAGGAGCGAAGAACACCTTCTCCAACATCAGATGACAAAAAAGGAG
GAATCTTAAAGAAAGCGAAATCAGCTGACAACTTAACAACAGCTGGACGT
AGCAGCTCACCTGTCACATTGAAATTATTCTTAAAGAAATCTGATTCTCC
TATTAACGTTACACGTTCAGATTCGAACGCGTCTTCTAGTTCCTCGTCAT
CGGCCGGCTCCACCAACCCGCCGCCTCCTCAAATCGTTTCCAAGAACCCG
CTTTCTCCATTGACTCCTTTGTCACCAATGTCACCAACAAAGCGCGTCTC
TCCTCCACCACCAGGAGCCAAGGATTTACCAGACGAGCCAAGAAGCCCAC
AAAACGGCGAAACCACGTTACAAAGAAAACGCCAAGCCGCCATTAAGCCT
ATTATTACACGCCCATCGACGCCACTTCAATCGATAATCGACGCGATGAA
TAATTCACCCATTAATGATTATCCACAACATTTCCACGCCATGATGCAGA
ATATGGAACCAGATCGATTCTACGTTGTCAACGGTGATCTTCTCATCAAG
GTCAATACGTTCGGATCGTTACGTCCGTACGCTGTCGTTTACGTGCAACC
GTGGGAAGAACGTAGCCGTAAAGTCTTCCAAGAAATGCGTTTAAACAAAC
GTACAAAACATCACAGCGAACGTGTCTGTATTGAAGCTAACTCACAAGTT
GGAATTGTCAAACTTCTTGTTAATTGCACTTTGCAAGACACAATCGTATC
CGTTGTTTGTACACAACAAAACACAGCTTTTCTTCCCTCCTATATCGAAA
CTATGGGATGGGGCTTCCAAGTACCTGCTGGATTACACAGAAACGCATTT
TTCCATCAAGAAAATATGTTGTTGAGACTCAGACAACGTATTCCAGATGT
TGAGAGAATGGCAGCTGGTATGTAACTTGATGCACATTTGGAGCAAGATT
GCCAATATGAGCCAGTGGAATGCAGATATAGCGCATTTGGTTGTGAAGAT
AAGGACCATCGCATAGACTGTGACTTTTGTCCGAAGAAATGTCCAAATGA
AAACTGCCAAGTCAAAATTAGAAATACAGAGAAACACGAGGAGAAATGTA
AATACAAGTCTATCCAATGTTCGAATAAAGGATGTCGTTCAGAAATGATG
AGAATGAACTTACTAAAACATTTGAATAATTGTCAATATCAAATTGTTGC
ATGTGAATTTTGTGCAACTAAAGTACCACAAATTGATATGGAGGTGAAGG
AAAGCAAGGCAATGGACCGAATCATATTGACATCAGTGAAAATCAAATGT
TTACAAGCACAATTAGGATGTGATTGGCAAGGTGAACTATCCTCAGTTGA
GATGATAAAACGAATCGATATGAAGCTCCACTTGGATGAATCAGTACACG
ATCACATGTCATTACTTTTCAAGAGTAACCAAGACCTTGAGAAATCTCAT
CGAGAAACAAAACAGGAGTTAGATGATGCTCAACAACGATTGGTCAAAAC
AACAATGGTGTTGAAAGAATTCAATGAAATGTTGAATCAAACACGACGAG
AGCTTGAAGCAACAAAACGTGAATTTGCAGCATTCAGAAAGGAGACATCT
GAGAAAATAGCTGAACAAGATGCACAATTGGAGAAATACAAGAATCAACC
AAGAGCTCCTACACCAACCAGAATTGAGCCTCTGAAATCACCACGTGATA
GTCCAGTCTCCAAGAGCCCAAGGCAAAGTCCAGAACCAGGCACCAATATC
CCAATCGGTCGCAAGTCACCAGAGCCTGTTAAGGAGCGAAGAACACCTTC
TCCAACATCAGATGACAAAAAAGGAGGAATCTTAAAGAAAGCGAAATCAG
CTGACAACTTAACAACAGCTGGACGTAGCAGCTCACCTGTCACATTGAAA
TTATTCTTAAAGAAATCTGATTCTCCTATTAACGTTACACGTTCAGATTC
GAACGCGTCTTCTAGTTCCTCGTCATCGGCCGGCTCCACCAACCCGCCGC
CTCCTCAAATCGTTTCCAAGAACCCGCTTTCTCCATTGACTCCTTTGTCA
CCAATGTCACCAACAAAGCGCGTCTCTCCTCCACCACCAGGAGCCAAGGA
TTTACCAGACGAGCCAAGAAGCCCACAAAACGGCGAAACCACGTTACAAA
GAAAACGCCAAGCCGCCATTAAGCCTATTATTACACGCCCATCGACGCCA
CTTCAATCGATAATCGACGCGATGAATAATTCACCCATTAATGATTATCC
ACAACATTTCCACGCCATGATGCAGAATATGGAACCAGATCGATTCTACG
TTGTCAACGGTGATCTTCTCATCAAGGTCAATACGTTCGGATCGTTACGT
CCGTACGCTGTCGTTTACGTGCAACCGTGGGAAGAACGTAGCCGTAAAGT
CTTCCAAGAAATGCGTTTAAACAAACGTACAAAACATCACAGCGAACGTG
TCTGTATTGAAGCTAACTCACAAGTTGGAATTGTCAAACTTCTTGTTAAT
TGCACTTTGCAAGACACAATCGTATCCGTTGTTTGTACACAACAAAACAC
AGCTTTTCTTCCCTCCTATATCGAAACTATGGGATGGGGCTTCCAAGTAC
CTGCTGGATTACACAGAAACGCATTTTTCCATCAAGAAAATATGTTGTTG
AGACTCAGACAACGTATTCCAGATGTTGAGAGAATGGCAGCTGGTATGTA
ACTTGATGCACATTTGGAGCAAGATTGCCAATATGAGCCAGTGGAATGCA
GATATAGCGCATTTGGTTGTGAAGATAAGGACCATCGCATAGACTGTGAC
TTTTGTCCGAAGAAATGTCCAAATGAAAACTGCCAAGTCAAAATTAGAAA
TACAGAGAAACACGAGGAGAAATGTAAATACAAGTCTATCCAATGTTCGA
ATAAAGGATGTCGTTCAGAAATGATGAGAATGAACTTACTAAAACATTTG
AATAATTGTCAATATCAAATTGTTGCATGTGAATTTTGTGCAACTAAAGT
ACCACAAATTGATATGGAGGTGAAGGAAAGCAAGGCAATGGACCGAATCA
TATTGACATCAGTGAAAATCAAATGTTTACAAGCACAATTAGGATGTGAT
TGGCAAGGTGAACTATCCTCAGTTGAGATGATAAAACGAATCGATATGAA
GCTCCACTTGGATGAATCAGTACACGATCACATGTCATTACTTTTCAAGA
GTAACCAAGACCTTGAGAAATCTCATCGAGAAACAAAACAGGAGTTAGAT
GATGCTCAACAACGATTGGTCAAAACAACAATGGTGTTGAAAGAATTCAA
TGAAATGTTGAATCAAACACGACGAGAGCTTGAAGCAACAAAACGTGAAT
TTGCAGCATTCAGAAAGGAGACATCTGAGAAAATAGCTGAACAAGATGCA
CAATTGGAGAAATACAAGAATCAACCAAGAGCTCCTACACCAACCAGAAT
TGAGCCTCTGAAATCACCACGTGATAGTCCAGTCTCCAAGAGCCCAAGGC
AAAGTCCAGAACCAGGCACCAATATCCCAATCGGTCGCAAGTCACCAGAG
CCTGTTAAGGAGCGAAGAACACCTTCTCCAACATCAGATGACAAAAAAGG
AGGAATCTTAAAGAAAGCGAAATCAGCTGACAACTTAACAACAGCTGGAC
GTAGCAGCTCACCTGTCACATTGAAATTATTCTTAAAGAAATCTGATTCT
CCTATTAACGTTACACGTTCAGATTCGAACGCGTCTTCTAGTTCCTCGTC
ATCGGCCGGCTCCACCAACCCGCCGCCTCCTCAAATCGTTTCCAAGAACC
CGCTTTCTCCATTGACTCCTTTGTCACCAATGTCACCAACAAAGCGCGTC
TCTCCTCCACCACCAGGAGCCAAGGATTTACCAGACGAGCCAAGAAGCCC
ACAAAACGGCGAAACCACGTTACAAAGAAAACGCCAAGCCGCCATTAAGC
CTATTATTACACGCCCATCGACGCCACTTCAATCGATAATCGACGCGATG
AATAATTCACCCATTAATGATTATCCACAACATTTCCACGCCATGATGCA
GAATATGGAACCAGATCGATTCTACGTTGTCAACGGTGATCTTCTCATCA
AGGTCAATACGTTCGGATCGTTACGTCCGTACGCTGTCGTTTACGTGCAA
CCGTGGGAAGAACGTAGCCGTAAAGTCTTCCAAGAAATGCGTTTAAACAA
ACGTACAAAACATCACAGCGAACGTGTCTGTATTGAAGCTAACTCACAAG
TTGGAATTGTCAAACTTCTTGTTAATTGCACTTTGCAAGACACAATCGTA
TCCGTTGTTTGTACACAACAAAACACAGCTTTTCTTCCCTCCTATATCGA
AACTATGGGATGGGGCTTCCAAGTACCTGCTGGATTACACAGAAACGCAT
TTTTCCATCAAGAAAATATGTTGTTGAGACTCAGACAACGTATTCCAGAT
GTTGAGAGAATGGCAGCTGGTATGTAACTTGATGCACATTTGGAGCAAGA
TTGCCAATATGAGCCAGTGGAATGCAGATATAGCGCATTTGGTTGTGAAG
ATAAGGACCATCGCATAGACTGTGACTTTTGTCCGAAGAAATGTCCAAAT
GAAAACTGCCAAGTCAAAATTAGAAATACAGAGAAACACGAGGAGAAATG
TAAATACAAGTCTATCCAATGTTCGAATAAAGGATGTCGTTCAGAAATGA
TGAGAATGAACTTACTAAAACATTTGAATAATTGTCAATATCAAATTGTT
GCATGTGAATTTTGTGCAACTAAAGTACCACAAATTGATATGGAGGTGAA
GGAAAGCAAGGCAATGGACCGAATCATATTGACATCAGTGAAAATCAAAT
GTTTACAAGCACAATTAGGATGTGATTGGCAAGGTGAACTATCCTCAGTT
GAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001120XLOC_001120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002147-proteinTCONS_00002147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002147-exon-sc0000018-1575043694:606967..606993TCONS_00002147-exon-sc0000018-1575043694:606967..606993Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1575043694:606693..606800TCONS_00002147-exon-sc0000018-1575043694:606693..606800Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1575043694:605935..606096TCONS_00002147-exon-sc0000018-1575043694:605935..606096Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1575043694:604540..604617TCONS_00002147-exon-sc0000018-1575043694:604540..604617Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1575043694:604168..604245TCONS_00002147-exon-sc0000018-1575043694:604168..604245Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1575043694:600947..602598TCONS_00002147-exon-sc0000018-1575043694:600947..602598Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1510915933:606967..606993TCONS_00002147-exon-sc0000018-1510915933:606967..606993Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1510915933:606693..606800TCONS_00002147-exon-sc0000018-1510915933:606693..606800Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1510915933:605935..606096TCONS_00002147-exon-sc0000018-1510915933:605935..606096Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1510915933:604540..604617TCONS_00002147-exon-sc0000018-1510915933:604540..604617Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1510915933:604168..604245TCONS_00002147-exon-sc0000018-1510915933:604168..604245Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1510915933:600947..602598TCONS_00002147-exon-sc0000018-1510915933:600947..602598Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1491911889:606967..606993TCONS_00002147-exon-sc0000018-1491911889:606967..606993Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1491911889:606693..606800TCONS_00002147-exon-sc0000018-1491911889:606693..606800Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1491911889:605935..606096TCONS_00002147-exon-sc0000018-1491911889:605935..606096Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1491911889:604540..604617TCONS_00002147-exon-sc0000018-1491911889:604540..604617Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1491911889:604168..604245TCONS_00002147-exon-sc0000018-1491911889:604168..604245Clytia hemisphaericaexon
TCONS_00002147-exon-sc0000018-1491911889:600947..602598TCONS_00002147-exon-sc0000018-1491911889:600947..602598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:600947..606993 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.018247 0.0423731 0.0414555 5.07204 3.70889 10.2243 14.887 24.961 22.5197 13.4599 29.5474 64.0155 43.7475 56.5262 36.6932 3.93314 24.5768 0.914993 1.08236 0.651302 0.9001 0.107273 0.117033 0.100451 0.304809 0.0769731 0.0273826 0.0207687 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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