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TCONS_00002143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002143
Unique NameTCONS_00002143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002143 ID=TCONS_00002143|Name=TCONS_00002143|organism=Clytia hemisphaerica|type=transcript|length=1245bp
GAGCAGtttgcatgttttttttatatgaacatccaaaaatttgttcttaa
ctttttgagttttaagccttaagaAGTTCTAAAAattattcttaatttca
ccattttgtgagtattttggtccattttcctaagaaattgggtgttgaag
ccttatgttcttatatagtgtgttcttatgaaaaaaaaaacgtgttgaGC
TCATAAAATCTCATAGAAACTCGTACNGAGaccttatgttcttttatagt
ttgttcttatgaaaaaaacgtgtCCAGCTCATAGAATCTCATAAAAACTC
TTATAGAGATATTAATCAAAAGGATGAATTCAAACTCTGGCGAAACTGAC
TGGCAATTAATTTACTGGCCTGGTTTCTGTGGACGTGGAGAATTTGTGCG
TTTAGTTTTTGAAGAAGCTGGCATCAAGTATGTAGAGAATAATGATGCTG
AatatatttataaatatttcaaatgtcaTGAGAATGAGATGGATGGATTT
CCAATGCTGTCACCACCAATAATCAAAGACAGAAAAACTGGATTTCAATT
ATGTCAAACACCAGTCATTTGTAAATACCTGGGCAAGAGGTATGGGTTGT
ATCCTGACAACGAGGCTGATGAATTCCATGCTGATCAAGTCAACGCTACA
ATTCATGACTATATTGGTGAAGGTCGATTATCTTTTCATGGCATTAGTCC
AAATGAAACCTATGAAATTCAGAAGGAAGAAACTAAACCCTACATTGCAC
GATTTGAAAAAGAACGTATACCAAGATATATGAACCATTTTGAGTTATTA
TTGAAACACAATGACGGGGGAAACGGGTACTTATTCGGCAGCAAGTTAAC
ATACGTTGATTTAGGACTATATCACATTCTTCGAGCAACTGAATTCCAAT
TCCCACAATCCTGGACCAACATTTTACCCACAATTCCTTTGCTGAAGACA
TTTAAAGAACGAATTGAAAATCGACCAAATATCAAATCATACTTGAATTC
AGGTCGATTGAAACCATTCTGTGGGGATAGTATGATGTAATACGCTAATA
TATAATGTAATATGTAACTCGTATTACTttgatgtaatatataatagaTA
ATACGTAATATGTAATGCGAAATGTTTTGTATACTGTAGTAAGGTTTACC
AGGGTTTACAACTTATAATGATAACtttatttcgtattttcatattttac
tcAGCACACACAGGAAACAtactagcctagttaactaagccctag
Run BLAST on NCBI

protein sequence of TCONS_00002143-protein

>TCONS_00002143-protein ID=TCONS_00002143-protein|Name=TCONS_00002143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MNSNSGETDWQLIYWPGFCGRGEFVRLVFEEAGIKYVENNDAEYIYKYFK
CHENEMDGFPMLSPPIIKDRKTGFQLCQTPVICKYLGKRYGLYPDNEADE
FHADQVNATIHDYIGEGRLSFHGISPNETYEIQKEETKPYIARFEKERIP
RYMNHFELLLKHNDGGNGYLFGSKLTYVDLGLYHILRATEFQFPQSWTNI
LPTIPLLKTFKERIENRPNIKSYLNSGRLKPFCGDSMM
Run BLAST on NCBI

transcript from alignment at sc0000018:557294..560755-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002143 ID=TCONS_00002143|Name=TCONS_00002143|organism=Clytia hemisphaerica|type=transcript|length=3462bp|location=Sequence derived from alignment at sc0000018:557294..560755- (Clytia hemisphaerica)
GAGCAGTTTGCATGTTTTTTTTATATGAACATCCAAAAATTTGTTCTTAA CTTTTTGAGTTTTAAGCCTTAAGAAGTTCTAAAAATTATTCTTAATTTCA CCATTTTGTGAGTATTTTGGTCCATTTTCCTAAGAAATTGGGTGTTGAAG CCTTATGTTCTTATATAGTGTGTTCTTATGAAAAAAAAAACGTGTTGAGC TCATAAAATCTCATAGAAACTCGTACNGAGACCTTATGTTCTTTTATAGT TTGTTCTTATGAAAAAAACGTGTCCAGCTCATAGAATCTCATAAAAACTC TTATAGAGATATTAATCAAAAGGATGAATTCAAACTCTGGCGAAACTGAC TGGCAATTAATTTACTGGCCTGGTTTCTGTGGACGTGGAGAATTTGTGCG TTTAGTTTTTGAAGAAGCTGGCATCAAGTATGTAGAGAATAATGATGCTG AATATATTTATAAATATTTCAAATGTCATGAGAATGAGATGGATGGATTT CCAATGCTGTCACCACCAATAATCAAAGACAGAAAAAGTAAGTTTTCTCT TTTCCTACATTTGACTTTCTCTCTAATTCGATCCTCAAAGACTTTTCTTC GATTAGAGAAAGATTATAAAGAGTATTTTCCACTACTTTTCAACTGAAAG GACCAGTCTTTTAGTTCGAATTATAGGAAAAATCGAATTATAAAGGTTAG AGTTGAAGAGAGCTGACTCTAAATCTAAACTAGCCATAACTTTCATTAAA GTGACACCGTTCAAAAGGAATGATCTTAGCCCTACAGTAATTTTTGTTAA GAGTGATCTCTCATCTGAGACAAATTCTTTCAAATGCTAACAAATGTGTC AAGGGTGATATACAGTCTACTTAGAGTGACATCCGTGCCTTGTCTTACAC ATTTTTTTTTATAAGAACAATTTCATAACAATACGAGGCTGAATTTTGGC CAAAACCTAAGAACAAATTAAGAAGAATCTAAGCCTCAGATTTCAGAAAT TACTGACAAGTACAGGTTTCCATTTTCATTAATATTAACATTTAAACCTG AAAATCCTTATGCGTGAAGCTATGAATGCCGTCCTCGGAAGCTTTAGGCT TCCTGCGGTAGCAATAAGTTTGAGTTTATCGACCCAGTGAATAATCTTGG ATTACGAAATTTACGTTTGGCTACGTTTTGAGAAATTCTCCTCTCCTCAT CGGGCAAAATATATTTTTATAAATCCTTAGAAAATTACATATGAAAGGAG TTCTTAGGTTTTCCAAAAATACCCAGCTTAATAAAATTTGCGGACTCGGA CCTTAAGCTATATAACCTCTAACAGCTATTCATGTTGCATTGTTTTAATG GCTAGAATAAAATTATTTTGAATAGCTTCAATCTCATAATTTTGACAAGC TATTTTTAACTTAGTCTTAACCTCCCAAGCCTTTTCCAGGTGTAACGTAG ACATTTCTTTCAGTTCAGTCTTGAAGAGAAATATCTGAAGAAATACCCCC TGTAATCTCAGCCGAAGAAAGATAGTGTGCTGAACTATATAACATATCTC TGTAATTTCAAAAGATCTGAATCTTCATTTCAAAGGTTTTGTTTTTTAAG AGTGATATCGTTTGCTTACTCATCACTTTTAATTCACAAGCTTTTTCATA TTGGATTGACACGGATATGGAGCAAGATTGGTCAGAAAAAGGAAAAGAAA AATATCTTTTTGCTTTTATCAGCATGTCCTGATATGAATATGTGTCTGAT ATGAAACGGGAACACTTATATAAAAAAAACCTTTAACCATTTCTTTACAA GCTGGATTTCAATTATGTCAAACACCAGTCATTTGTAAATACCTGGGCAA GAGGTATGGGTTGTATCCTGACAACGAGGCTGATGAATTCCATGCTGATC AAGTCAACGCTACAATTCATGACTATATTGGTGAAGGTTCGTAAAAGAAT TGAAACAAAAAAATACATTTTCTCTTGTTTGTTGATTTTTGAAAATATTT TCAATTTCTCTCAATAACCAGATTTTTAGACTATACTTTCCATATTTTAG GGGTATTCAGAGGCACATCTCCCAACCTCCTTTCCATTGCGACAAGAGAC AGCCCCTTTCTCACTGACCTGGTAGGATTTTTCCAGGCAGTGGGGATAAA AATAATGGTCTGAAACTTGATGGAGATTTCATTTCTTTTGTTTTAAAGTT GGAAAATGACTGCGAGACAGGGATTTGAAAATGGACACATAGAAAATTAT TCCAAACTTTGCTAAATTTGGAGGCGGAAAATACTCTATACTTTGCTGAG AGAGAAATCCTTCTGAGACATAATGGACACTGATAGCTTGTTCAAATCTT TCTAGTAAGTAAGTCTGTGATCGCAGTCGGATCGACCCGAAGACTTCTCT TTCGATAGCTATCTACCCAGAGGTAGAGCATGAATTGCTCCACTCAACCT TGATCCTTCTCTTAATAATTACTGAGCATTAAGCAGAGAGGCATAAAGTA CTATTTTAGAAATCTTTGGTATGACCCGGCTAGGGATTGAGCCAACAACC TTACAAACCGTTGCCGGATGTTCTACCACTACACTATGGTCGCTAAATCT TTCTACCGATTACATTACAGGTCGATTATCTTTTCATGGCATTAGTCCAA ATGAAACCTATGAAATTCAGAAGGAAGAAACTAAACCCTACATTGCACGA TTTGAAAAAGAACGTATACCAAGATATATGAACCATTTTGAGTTATTATT GAAACACAATGACGGGGGAAACGGGTAAGTAAACCTAAAGAAGGTTTCAC TGACCTTAAAAGAAATTCAGAAATATACAAGAAACAAACAATTATAATTG CAACGACTGTCTTGTATATCTAAATTCCATGCCCCCTTTTCAAAAATCAA GAACAACTCAAGAGCTTTTTTGGTAAGATCAGAAATTAAGTTAAAATTAA GTATAGAATCTAGAAAAAAAATAAAACATGCCATATAAAGGTTAAGGAAC ATGTTCTAGAAATTCGTCAAGCAATCTGTCTTTTATTTCTTAGGTACTTA TTCGGCAGCAAGTTAACATACGTTGATTTAGGACTATATCACATTCTTCG AGCAACTGAATTCCAATTCCCACAATCCTGGACCAACATTTTACCCACAA TTCCTTTGCTGAAGACATTTAAAGAACGAATTGAAAATCGACCAAATATC AAATCATACTTGAATTCAGGTCGATTGAAACCATTCTGTGGGGATAGTAT GATGTAATACGCTAATATATAATGTAATATGTAACTCGTATTACTTTGAT GTAATATATAATAGATAATACGTAATATGTAATGCGAAATGTTTTGTATA CTGTAGTAAGGTTTACCAGGGTTTACAACTTATAATGATAACTTTATTTC GTATTTTCATATTTTACTCAGCACACACAGGAAACATACTAGCCTAGTTA ACTAAGCCCTAG

Coding sequence (CDS) from alignment at sc0000018:557294..560755-

>TCONS_00002143 ID=TCONS_00002143|Name=TCONS_00002143|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0000018:557294..560755- (Clytia hemisphaerica)
GTACTTATTCGGCAGCAAGTTAACATACGTTGATTTAGGACTATATCACA
TTCTTCGAGCAACTGAATTCCAATTCCCACAATCCTGGACCAACATTTTA
CCCACAATTCCTTTGCTGAAGACATTTAAAGAACGAATTGAAAATCGACC
AAATATCAAATCATACTTGAATTCAGGTCGATTGAAACCATTCTGTGGGG
ATAGTATGATGTAAGTCGATTATCTTTTCATGGCATTAGTCCAAATGAAA
CCTATGAAATTCAGAAGGAAGAAACTAAACCCTACATTGCACGATTTGAA
AAAGAACGTATACCAAGATATATGAACCATTTTGAGTTATTATTGAAACA
CAATGACGGGGGAAACGGCTGGATTTCAATTATGTCAAACACCAGTCATT
TGTAAATACCTGGGCAAGAGGTATGGGTTGTATCCTGACAACGAGGCTGA
TGAATTCCATGCTGATCAAGTCAACGCTACAATTCATGACTATATTGGTG
AAGATGAATTCAAACTCTGGCGAAACTGACTGGCAATTAATTTACTGGCC
TGGTTTCTGTGGACGTGGAGAATTTGTGCGTTTAGTTTTTGAAGAAGCTG
GCATCAAGTATGTAGAGAATAATGATGCTGAATATATTTATAAATATTTC
AAATGTCATGAGAATGAGATGGATGGATTTCCAATGCTGTCACCACCAAT
AATCAAAGACAGAAAAAGTACTTATTCGGCAGCAAGTTAACATACGTTGA
TTTAGGACTATATCACATTCTTCGAGCAACTGAATTCCAATTCCCACAAT
CCTGGACCAACATTTTACCCACAATTCCTTTGCTGAAGACATTTAAAGAA
CGAATTGAAAATCGACCAAATATCAAATCATACTTGAATTCAGGTCGATT
GAAACCATTCTGTGGGGATAGTATGATGTAAGTCGATTATCTTTTCATGG
CATTAGTCCAAATGAAACCTATGAAATTCAGAAGGAAGAAACTAAACCCT
ACATTGCACGATTTGAAAAAGAACGTATACCAAGATATATGAACCATTTT
GAGTTATTATTGAAACACAATGACGGGGGAAACGGCTGGATTTCAATTAT
GTCAAACACCAGTCATTTGTAAATACCTGGGCAAGAGGTATGGGTTGTAT
CCTGACAACGAGGCTGATGAATTCCATGCTGATCAAGTCAACGCTACAAT
TCATGACTATATTGGTGAAGATGAATTCAAACTCTGGCGAAACTGACTGG
CAATTAATTTACTGGCCTGGTTTCTGTGGACGTGGAGAATTTGTGCGTTT
AGTTTTTGAAGAAGCTGGCATCAAGTATGTAGAGAATAATGATGCTGAAT
ATATTTATAAATATTTCAAATGTCATGAGAATGAGATGGATGGATTTCCA
ATGCTGTCACCACCAATAATCAAAGACAGAAAAAGTACTTATTCGGCAGC
AAGTTAACATACGTTGATTTAGGACTATATCACATTCTTCGAGCAACTGA
ATTCCAATTCCCACAATCCTGGACCAACATTTTACCCACAATTCCTTTGC
TGAAGACATTTAAAGAACGAATTGAAAATCGACCAAATATCAAATCATAC
TTGAATTCAGGTCGATTGAAACCATTCTGTGGGGATAGTATGATGTAAGT
CGATTATCTTTTCATGGCATTAGTCCAAATGAAACCTATGAAATTCAGAA
GGAAGAAACTAAACCCTACATTGCACGATTTGAAAAAGAACGTATACCAA
GATATATGAACCATTTTGAGTTATTATTGAAACACAATGACGGGGGAAAC
GGCTGGATTTCAATTATGTCAAACACCAGTCATTTGTAAATACCTGGGCA
AGAGGTATGGGTTGTATCCTGACAACGAGGCTGATGAATTCCATGCTGAT
CAAGTCAACGCTACAATTCATGACTATATTGGTGAAGATGAATTCAAACT
CTGGCGAAACTGACTGGCAATTAATTTACTGGCCTGGTTTCTGTGGACGT
GGAGAATTTGTGCGTTTAGTTTTTGAAGAAGCTGGCATCAAGTATGTAGA
GAATAATGATGCTGAATATATTTATAAATATTTCAAATGTCATGAGAATG
AGATGGATGGATTTCCAATGCTGTCACCACCAATAATCAAAGACAGAAAA
AGTACTTATTCGGCAGCAAGTTAACATACGTTGATTTAGGACTATATCAC
ATTCTTCGAGCAACTGAATTCCAATTCCCACAATCCTGGACCAACATTTT
ACCCACAATTCCTTTGCTGAAGACATTTAAAGAACGAATTGAAAATCGAC
CAAATATCAAATCATACTTGAATTCAGGTCGATTGAAACCATTCTGTGGG
GATAGTATGATGTAAGTCGATTATCTTTTCATGGCATTAGTCCAAATGAA
ACCTATGAAATTCAGAAGGAAGAAACTAAACCCTACATTGCACGATTTGA
AAAAGAACGTATACCAAGATATATGAACCATTTTGAGTTATTATTGAAAC
ACAATGACGGGGGAAACGGCTGGATTTCAATTATGTCAAACACCAGTCAT
TTGTAAATACCTGGGCAAGAGGTATGGGTTGTATCCTGACAACGAGGCTG
ATGAATTCCATGCTGATCAAGTCAACGCTACAATTCATGACTATATTGGT
GAAGATGAATTCAAACTCTGGCGAAACTGACTGGCAATTAATTTACTGGC
CTGGTTTCTGTGGACGTGGAGAATTTGTGCGTTTAGTTTTTGAAGAAGCT
GGCATCAAGTATGTAGAGAATAATGATGCTGAATATATTTATAAATATTT
CAAATGTCATGAGAATGAGATGGATGGATTTCCAATGCTGTCACCACCAA
TAATCAAAGACAGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001118XLOC_001118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002143-exon-sc0000018-1575043694:560219..560755TCONS_00002143-exon-sc0000018-1575043694:560219..560755Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1575043694:558820..558954TCONS_00002143-exon-sc0000018-1575043694:558820..558954Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1575043694:557982..558135TCONS_00002143-exon-sc0000018-1575043694:557982..558135Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1575043694:557294..557712TCONS_00002143-exon-sc0000018-1575043694:557294..557712Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1510915933:560219..560755TCONS_00002143-exon-sc0000018-1510915933:560219..560755Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1510915933:558820..558954TCONS_00002143-exon-sc0000018-1510915933:558820..558954Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1510915933:557982..558135TCONS_00002143-exon-sc0000018-1510915933:557982..558135Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1510915933:557294..557712TCONS_00002143-exon-sc0000018-1510915933:557294..557712Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1491911889:560219..560755TCONS_00002143-exon-sc0000018-1491911889:560219..560755Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1491911889:558820..558954TCONS_00002143-exon-sc0000018-1491911889:558820..558954Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1491911889:557982..558135TCONS_00002143-exon-sc0000018-1491911889:557982..558135Clytia hemisphaericaexon
TCONS_00002143-exon-sc0000018-1491911889:557294..557712TCONS_00002143-exon-sc0000018-1491911889:557294..557712Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002143-proteinTCONS_00002143-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:557294..560755 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.8916 13.6117 7.72264 7.58683 10.3446 7.66353 25.5358 27.245 36.9807 30.1874 49.6948 25.8112 25.3408 18.0318 14.6812 28.063 7.5017 8.50265 7.7563 8.34198 3.7318 3.82752 4.97109 6.00755 3.51582 7.07399 4.05996 1.31534 6.10322 4.76322
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004046GST_C
IPR010987Glutathione-S-Trfase_C-like
IPR004045Glutathione_S-Trfase_N
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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