TCONS_00002141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002141
Unique NameTCONS_00002141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002141 ID=TCONS_00002141|Name=TCONS_00002141|organism=Clytia hemisphaerica|type=transcript|length=602bp
CGTTGGCCACATGGTCATTGTCGTTGGCCACACGGTCACTGTCGTTGGCC
ACACGGACACTGTCGTTGGCTACACGGTCACTGTCGTTGGCTACACGGTC
ACTGTCGTTGGCCACACGGTCATTGTCGTTGGCTACACGATCACTGTCGT
TGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTCGTTGGCTACA
CGGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGGCTACACGGTCACT
GTCGTTGGCCACCCGGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGG
TCACACGGACACTGTCGTTGGCCACACGGTCACTGTCGTTGGCCACACGG
ACACTGTCGTCGGCCACACGGTCACTGTCGTTGGCCACACGGTCACTGTC
GTTGGCTACACGGTCACTGTCGTTAGCCACACGGTCACTGTCGTTGGCCA
CACGGTCACTGTCGTCGGCCACACGGTCATTGTCGTTGGCTACACGGTCA
CTGTCGTTGGCTACACGGTCGTCAAAAATTCGTAAGAAATTTATTACCTG
GTTGTCTCTAACGATCTCACGACATTGTGGACACTGCAACTCTTTGACAC
Ct
Run BLAST on NCBI

protein sequence of TCONS_00002141-protein

>TCONS_00002141-protein ID=TCONS_00002141-protein|Name=TCONS_00002141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
LATWSLSLATRSLSLATRTLSLATRSLSLATRSLSLATRSLSLATRSLSL
ATRSLSLATRTLSLATRSLSLATRSLSLATRSLSLATRSLSLATRSLSLV
TRTLSLATRSLSLATRTLSSATRSLSLATRSLSLATRSLSLATRSLSLAT
RSLSSATRSLSLATRSLSLATRSSKIRKKFITWLSLTISRHCGHCNSLTP
Run BLAST on NCBI

transcript from alignment at sc0000018:443183..444142-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002141 ID=TCONS_00002141|Name=TCONS_00002141|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0000018:443183..444142- (Clytia hemisphaerica)
CGTTGGCCACATGGTCATTGTCGTTGGCCACACGGTCACTGTCGTTGGCC
ACACGGACACTGTCGTTGGCTACACGGTCACTGTCGTTGGCTACACGGTC
ACTGTCGTTGGCCACACGGTCATTGTCGTTGGCTACACGATCACTGTCGT
TGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTCGTTGGCTACA
CGGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGGCTACACGGTCACT
GTCGTTGGCCACCCGGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGG
TCACACGGACACTGTCGTTGGCCACACGGTCACTGTCGTTGGCCACACGG
ACACTGTCGTCGGCCACACGGTCACTGTCGTTGGCCACACGGTCACTGTC
GTTGGCTACACGGTCACTGTCGTTAGCCACACGGTCACTGTCGTTGGCCA
CACGGTCACTGTCGTCGGCCACACGGTCATTGTCGTTGGCTACACGGTCA
CTGTCGTTGGCTACATGGTCATTGTCGTTGGCCACACGGTCACTGTCGTT
GGTCACACGGTCACTGTCGTTGGCCACATGGTCATTGTCGTTGGCCACAC
GGTCACTGTCGTTGGCCACATGGTCATTGTCGTTGGCCACACGGTCACTG
TCGTTGGCCACACGGTCACTGTCGTTGGCCACACGGTCACTGTCGGTTGG
CTACATGGTCATTGTCGTTGGCCACACGGTCACTGTCGTTGGCTACATGG
TCATTGTCGTTGGCCACACGGTCACTGTCGTTGGTCACACGGTCACTGTC
GTTGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTCGTCGGCCA
CACGGTCACTGTCGTTGGCCACACGGTCGTCAAAAATTCGTAAGAAATTT
ATTACCTGGTTGTCTCTAACGATCTCACGACATTGTGGACACTGCAACTC
TTTGACACCT

Coding sequence (CDS) from alignment at sc0000018:443183..444142-

>TCONS_00002141 ID=TCONS_00002141|Name=TCONS_00002141|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000018:443183..444142- (Clytia hemisphaerica)
ACGGTCGTCAAAAATTCGTAAGAAATTTATTACCTGGTTGTCTCTAACGA
TCTCACGACATTGTGGACACTGCAACTCTTTGACACCTTTGGCCACATGG
TCATTGTCGTTGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTC
GTTGGCTACACGGTCACTGTCGTTGGCTACACGGTCACTGTCGTTGGCCA
CACGGTCATTGTCGTTGGCTACACGATCACTGTCGTTGGCCACACGGTCA
CTGTCGTTGGCCACACGGACACTGTCGTTGGCTACACGGTCACTGTCGTT
GGCCACACGGTCACTGTCGTTGGCTACACGGTCACTGTCGTTGGCCACCC
GGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGGTCACACGGACACTG
TCGTTGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTCGTCGGC
CACACGGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGGCTACACGGT
CACTGTCGTTAGCCACACGGTCACTGTCGTTGGCCACACGGTCACTGTCG
TCGGCCACACGGTCATTGTCGTTGGCTACACGGTCACTGTCGTTGGCTAC
ACGGTCGTCAAAAATTCGTAAGAAATTTATTACCTGGTTGTCTCTAACGA
TCTCACGACATTGTGGACACTGCAACTCTTTGACACCTTTGGCCACATGG
TCATTGTCGTTGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTC
GTTGGCTACACGGTCACTGTCGTTGGCTACACGGTCACTGTCGTTGGCCA
CACGGTCATTGTCGTTGGCTACACGATCACTGTCGTTGGCCACACGGTCA
CTGTCGTTGGCCACACGGACACTGTCGTTGGCTACACGGTCACTGTCGTT
GGCCACACGGTCACTGTCGTTGGCTACACGGTCACTGTCGTTGGCCACCC
GGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGGTCACACGGACACTG
TCGTTGGCCACACGGTCACTGTCGTTGGCCACACGGACACTGTCGTCGGC
CACACGGTCACTGTCGTTGGCCACACGGTCACTGTCGTTGGCTACACGGT
CACTGTCGTTAGCCACACGGTCACTGTCGTTGGCCACACGGTCACTGTCG
TCGGCCACACGGTCATTGTCGTTGGCTACACGGTCACTGTCGTTGGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001116XLOC_001116Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002141-proteinTCONS_00002141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002141-exon-sc0000018-1575043694:443629..444142TCONS_00002141-exon-sc0000018-1575043694:443629..444142Clytia hemisphaericaexon
TCONS_00002141-exon-sc0000018-1575043694:443183..443270TCONS_00002141-exon-sc0000018-1575043694:443183..443270Clytia hemisphaericaexon
TCONS_00002141-exon-sc0000018-1510915933:443629..444142TCONS_00002141-exon-sc0000018-1510915933:443629..444142Clytia hemisphaericaexon
TCONS_00002141-exon-sc0000018-1510915933:443183..443270TCONS_00002141-exon-sc0000018-1510915933:443183..443270Clytia hemisphaericaexon
TCONS_00002141-exon-sc0000018-1491911889:443629..444142TCONS_00002141-exon-sc0000018-1491911889:443629..444142Clytia hemisphaericaexon
TCONS_00002141-exon-sc0000018-1491911889:443183..443270TCONS_00002141-exon-sc0000018-1491911889:443183..443270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:443183..444142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.552911	0	0.155622	4.20393	6.07583	7.60117	6.04164	6.80466	7.6137	3.41382	6.02122	8.73637	11.9579	16.5127	16.5461	16.4858	16.8116	8.43763	7.21431	11.3615	14.8463	2.87801	2.72949	5.90946	3.71618	3.6343	0.700721	5.39118	3.48397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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