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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002103 ID=TCONS_00002103|Name=TCONS_00002103|organism=Clytia hemisphaerica|type=transcript|length=1001bp
GGTACATAAATTGTTAGCCCTTGTATtggttctggtcaatgcatCAGTAG
CAAATGGTTGTTCAGCCATGTGGAATAGACAAGAATATCCTTGCAATCAA
TATTTCCACATCTGTAGAGACCACATCGAAGGATTTGAAGGTTACCTAAA
ACTACCCGTCTTGCAAGAAATGAACCCACAAAAGATGAGCTCTGACGACA
GGAAACTGTTTGAAAACGGAGATATCAAAATCACGTTTAGTCACGAATTG
GACGTGCTTCATCCTTGGGAAGAGAATCATGGTCTGCGTGAAGAAAAGGA
CAAAGGGAACAAACAAAACTTTACAATTTTCGTCAAAGATGTTTACCGTG
ACCGCATGGAACGTCTGTCAACCGGTGACCattacaaaattgatttgacG
TGGCGCTCACATCTTCTGCATCCGGACAGACGTCTCGAAACGAAGAAACA
GAAAGTAATTGGGATCCGGTCAATTCAATTCGGGAATTTCATCTGTCCTG
AACCGCCAGCTGCCGAGGTGGTTTTACCGAAATGTCGTATCTTTATGATT
GATTCGACCATAACTGATGGATATCGCGCCACGGCTGTTTTTACCGTACC
TTCAAACAAAAACCATTGGGTCGCCCGAATGAAATTTTCCGTACCTATCC
GTAATTTTGATACACCGACCGGAGATCGCGTCCGTATTGAAGAAGACGAA
TTTGAAATCACTAGTTTACGTCACAACGGTAAAGTACATGGTGGACACGA
GTTTCATTTGGAATTCACCGTTCACGTTTACGGAAACAACGACGTCGAAC
GGAGCACCAATAAAAAAGGGGCGAAAAACATTGTCACGATGTCTTTCAAT
GAATTTTCTTGTGCTGGATCAGTTATTATCAATCGATGGCTTTGAAACCT
GATTGATCAAACTcatgcaaaatttaaaaagttattttatatCAACTCTT
TGTGAAGTAGAAACTCCCTCAGATTTCCAACATAAAACTTACGCAACTTA
C Run BLAST on NCBI protein sequence of TCONS_00002103-protein >TCONS_00002103-protein ID=TCONS_00002103-protein|Name=TCONS_00002103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
VHKLLALVLVLVNASVANGCSAMWNRQEYPCNQYFHICRDHIEGFEGYLK
LPVLQEMNPQKMSSDDRKLFENGDIKITFSHELDVLHPWEENHGLREEKD
KGNKQNFTIFVKDVYRDRMERLSTGDHYKIDLTWRSHLLHPDRRLETKKQ
KVIGIRSIQFGNFICPEPPAAEVVLPKCRIFMIDSTITDGYRATAVFTVP
SNKNHWVARMKFSVPIRNFDTPTGDRVRIEEDEFEITSLRHNGKVHGGHE
FHLEFTVHVYGNNDVERSTNKKGAKNIVTMSFNEFSCAGSVIINRWL Run BLAST on NCBI transcript from alignment at sc0000018:28619..29996- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002103 ID=TCONS_00002103|Name=TCONS_00002103|organism=Clytia hemisphaerica|type=transcript|length=1378bp|location=Sequence derived from alignment at sc0000018:28619..29996- (Clytia hemisphaerica)
GGTACATAAATTGTTAGCCCTTGTATTGGTTCTGGTCAATGCATCAGTAG
CAAATGGTTGTTCAGCCATGTGGAATAGACAAGAATATCCTTGCAATCAA
TATTTCCACATCTGTAGAGACCACATCGAAGGATTTGAAGGTTACCTAAA
ACTACCCGTCTTGCAAGAAATGAACCCACAAAAGATGAGCTCTGACGACA
GGAAACTGTTTGAAAACGGAGATATCAAAATCACGTTTAGTCACGAATTG
GACGTGCTTCATCCTTGGGAAGGTAATCTGACTTTTCTGTATAAATAGAA
GTGTGTAAAAGCGCAATATTTTAATACAAGGTAAAATCAATCAATCTTAT
TTCAGTTGTTCTATGCCCTTCAATTTTTTAATATTTTTTAACGTTTCAAT
CTTATCAACGAGGAAAAATCGCGATCTTATTTATGCCCTTTATCACAGCC
TTCATGTTTCTACTGCTATCTAAAATTATGGACGGACTAGATGATTTTCA
TTTGATAATATTCCACTCGCAATTATGTTTGCAACGAGGACGAAGTCTTA
AACCCTACTCCACTGTTAGTGAACTTGATTAACTTGTTATGTCATAATAA
TACAATGTATATTGTGTTAAGTCTCTCAAGTAAGTTTCTGCATTTTCAGA
GAATCATGGTCTGCGTGAAGAAAAGGACAAAGGGAACAAACAAAACTTTA
CAATTTTCGTCAAAGATGTTTACCGTGACCGCATGGAACGTCTGTCAACC
GGTGACCATTACAAAATTGATTTGACGTGGCGCTCACATCTTCTGCATCC
GGACAGACGTCTCGAAACGAAGAAACAGAAAGTAATTGGGATCCGGTCAA
TTCAATTCGGGAATTTCATCTGTCCTGAACCGCCAGCTGCCGAGGTGGTT
TTACCGAAATGTCGTATCTTTATGATTGATTCGACCATAACTGATGGATA
TCGCGCCACGGCTGTTTTTACCGTACCTTCAAACAAAAACCATTGGGTCG
CCCGAATGAAATTTTCCGTACCTATCCGTAATTTTGATACACCGACCGGA
GATCGCGTCCGTATTGAAGAAGACGAATTTGAAATCACTAGTTTACGTCA
CAACGGTAAAGTACATGGTGGACACGAGTTTCATTTGGAATTCACCGTTC
ACGTTTACGGAAACAACGACGTCGAACGGAGCACCAATAAAAAAGGGGCG
AAAAACATTGTCACGATGTCTTTCAATGAATTTTCTTGTGCTGGATCAGT
TATTATCAATCGATGGCTTTGAAACCTGATTGATCAAACTCATGCAAAAT
TTAAAAAGTTATTTTATATCAACTCTTTGTGAAGTAGAAACTCCCTCAGA
TTTCCAACATAAAACTTACGCAACTTAC Coding sequence (CDS) from alignment at sc0000018:28619..29996- >TCONS_00002103 ID=TCONS_00002103|Name=TCONS_00002103|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000018:28619..29996- (Clytia hemisphaerica)
AGAATCATGGTCTGCGTGAAGAAAAGGACAAAGGGAACAAACAAAACTTT
ACAATTTTCGTCAAAGATGTTTACCGTGACCGCATGGAACGTCTGTCAAC
CGGTGACCATTACAAAATTGATTTGACGTGGCGCTCACATCTTCTGCATC
CGGACAGACGTCTCGAAACGAAGAAACAGAAAGTAATTGGGATCCGGTCA
ATTCAATTCGGGAATTTCATCTGTCCTGAACCGCCAGCTGCCGAGGTGGT
TTTACCGAAATGTCGTATCTTTATGATTGATTCGACCATAACTGATGGAT
ATCGCGCCACGGCTGTTTTTACCGTACCTTCAAACAAAAACCATTGGGTC
GCCCGAATGAAATTTTCCGTACCTATCCGTAATTTTGATACACCGACCGG
AGATCGCGTCCGTATTGAAGAAGACGAATTTGAAATCACTAGTTTACGTC
ACAACGGTAAAGTACATGGTGGACACGAGTTTCATTTGGAATTCACCGTT
CACGTTTACGGAAACAACGACGTCGAACGGAGCACCAATAAAAAAGGGGC
GAAAAACATTGTCACGATGTCTTTCAATGAATTTTCTTGTGCTGGATCAG
TTATTATCAATCGATGGCTTTGAGTACATAAATTGTTAGCCCTTGTATTG
GTTCTGGTCAATGCATCAGTAGCAAATGGTTGTTCAGCCATGTGGAATAG
ACAAGAATATCCTTGCAATCAATATTTCCACATCTGTAGAGACCACATCG
AAGGATTTGAAGGTTACCTAAAACTACCCGTCTTGCAAGAAATGAACCCA
CAAAAGATGAGCTCTGACGACAGGAAACTGTTTGAAAACGGAGATATCAA
AATCACGTTTAGTCACGAATTGGACGTGCTTCATCCTTGGGAAGAGAATC
ATGGTCTGCGTGAAGAAAAGGACAAAGGGAACAAACAAAACTTTACAATT
TTCGTCAAAGATGTTTACCGTGACCGCATGGAACGTCTGTCAACCGGTGA
CCATTACAAAATTGATTTGACGTGGCGCTCACATCTTCTGCATCCGGACA
GACGTCTCGAAACGAAGAAACAGAAAGTAATTGGGATCCGGTCAATTCAA
TTCGGGAATTTCATCTGTCCTGAACCGCCAGCTGCCGAGGTGGTTTTACC
GAAATGTCGTATCTTTATGATTGATTCGACCATAACTGATGGATATCGCG
CCACGGCTGTTTTTACCGTACCTTCAAACAAAAACCATTGGGTCGCCCGA
ATGAAATTTTCCGTACCTATCCGTAATTTTGATACACCGACCGGAGATCG
CGTCCGTATTGAAGAAGACGAATTTGAAATCACTAGTTTACGTCACAACG
GTAAAGTACATGGTGGACACGAGTTTCATTTGGAATTCACCGTTCACGTT
TACGGAAACAACGACGTCGAACGGAGCACCAATAAAAAAGGGGCGAAAAA
CATTGTCACGATGTCTTTCAATGAATTTTCTTGTGCTGGATCAGTTATTA
TCAATCGATGGCTTTGAGTACATAAATTGTTAGCCCTTGTATTGGTTCTG
GTCAATGCATCAGTAGCAAATGGTTGTTCAGCCATGTGGAATAGACAAGA
ATATCCTTGCAATCAATATTTCCACATCTGTAGAGACCACATCGAAGGAT
TTGAAGGTTACCTAAAACTACCCGTCTTGCAAGAAATGAACCCACAAAAG
ATGAGCTCTGACGACAGGAAACTGTTTGAAAACGGAGATATCAAAATCAC
GTTTAGTCACGAATTGGACGTGCTTCATCCTTGGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002103-exon-sc0000018-1575043694:29725..29996 | TCONS_00002103-exon-sc0000018-1575043694:29725..29996 | Clytia hemisphaerica | exon |
| TCONS_00002103-exon-sc0000018-1575043694:28619..29347 | TCONS_00002103-exon-sc0000018-1575043694:28619..29347 | Clytia hemisphaerica | exon |
| TCONS_00002103-exon-sc0000018-1510915933:29725..29996 | TCONS_00002103-exon-sc0000018-1510915933:29725..29996 | Clytia hemisphaerica | exon |
| TCONS_00002103-exon-sc0000018-1510915933:28619..29347 | TCONS_00002103-exon-sc0000018-1510915933:28619..29347 | Clytia hemisphaerica | exon |
| TCONS_00002103-exon-sc0000018-1491911889:29725..29996 | TCONS_00002103-exon-sc0000018-1491911889:29725..29996 | Clytia hemisphaerica | exon |
| TCONS_00002103-exon-sc0000018-1491911889:28619..29347 | TCONS_00002103-exon-sc0000018-1491911889:28619..29347 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:28619..29996 - |
Blast
The following BLAST results are available for this feature:
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