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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002097 ID=TCONS_00002097|Name=TCONS_00002097|organism=Clytia hemisphaerica|type=transcript|length=512bp
CTAAATATGAAACAAATAAGATAATCGTTTATCATAACAAGGATTGGTTT
GAAATCAACTTGTCAATGTTGATGGTGTTCGCGAAGAAATGGAAAATCTT
CTTAGGAATCGCACTAgctttgattttgattggtttagCTATGGTTATAT
CTGGTTCCACATTATTAAGCCGGGCAGCTAAGGATTCAGAGGCAGGATTT
ACGGCGTTATTAGTATTTGGTGTGATTTTCTTCGTCATTGGTATCATCTT
AACCGTCATCACTATCGTCATCAAACGCAAGAAAGACTCTTTATTTCCTG
GACTCAAATGAAACCATTTAGTTATTTTTAGAACTTATCTTTTATGCTTT
ccataaatttgtattttacattCAGAAAAAGCTTAATATCCCTACATTAA
AGTgtgaaaaataaagtttttcgagaatttgaccattttttgccttCTTA
TCGacgattttttaaagaaaatgtacGGAAAGGTCGATTTCTAGCCAGAG
CCTACAATAAAG Run BLAST on NCBI protein sequence of TCONS_00002097-protein >TCONS_00002097-protein ID=TCONS_00002097-protein|Name=TCONS_00002097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
KYETNKIIVYHNKDWFEINLSMLMVFAKKWKIFLGIALALILIGLAMVIS
GSTLLSRAAKDSEAGFTALLVFGVIFFVIGIILTVITIVIKRKKDSLFPG
LK Run BLAST on NCBI transcript from alignment at sc0000018:988650..990198+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002097 ID=TCONS_00002097|Name=TCONS_00002097|organism=Clytia hemisphaerica|type=transcript|length=1549bp|location=Sequence derived from alignment at sc0000018:988650..990198+ (Clytia hemisphaerica)
CTAAATATGAAACAAATAAGATAATCGTTTATCATAACAAGGATTGGTTT
GAAAGtgtgtaatttttatttatcagTGGGAAGAGCGCTTGTTGAACCGT
CAATATGAAATGTAGGTACATCATTTTCAATATTAGCCTGTATATATTca
attattgtattattttgatgtttctgcTATTTAAAGCTTAGCCTACCTAG
ATGCTTGTAAACCAAGAATCGAAATTAGCCTTACTTTTAGCAATAAAAGG
CAACCACTTAAAGAGGCCACNTAATCGGAATTAGCCTTACTTTTAGCAAT
AAAAGGCGCTCACTTAAAGAGGCCACTCCCAGCGGTaagtctgatcacga
tatcacgcaattcTTTGTTTTCAACCCCGATCACGAAAGTCCAGCAAAAA
TTTGGATAATCACgcattcctttgaaaaagtccaaatcacgccctcacag
ctcaaaaatctttcaaatcacgatcacgttttgacctctgatcacgcaat
cacgaaaaaaattttccaaatcacaTTAATCACGTTACAAAAATCCCTAT
CTCACCATCATGAAAACCGCTCGGTGGGCCTCTTTAAACCGAATAGATTT
TAATTCAGAAGGCTTTTTAACCGTTAGAAACTCTTATTTCACTCTGTATT
ATCCCTCTCCATTTAATTTTAGTCAACTTGTCAATGTTGATGGTGTTCGC
GAAGAAATGGAAAATCTTCTTAGGAATCGCACTAgctttgattttgattg
gtttagCTATGGTTATATCTGGTTCCACATTATTAAGCCGGGCAGCTAAG
GTAAATATATTTACCTATCTGACATTAAACGTGATTTTGAGATTGAGGAT
TTGTTGAAGATAAGCTGGTTCTGGCAGTTTCATTAGAACTTAAAACTATC
AAATATGATTGATATGGAAGCCCTAATAAGTTTGataaatagaccttatc
ggagttttttatttttctaaacaagcgatgcattgtgggattgtttcggg
agtatttcaatagaaatctcttaggaattcctcgagggaattctattgta
atactcccgaaacaatcccacaatgcatcgctatttttttcttgccgAAA
CTGTAGAGAAACTGTTAGAGTTAAAGAGTCATTCAAGTTGTAAAAGTCCC
ATTTCTAGAGACTCCCTGTAATCATGAAACAATTCCTTATTATAATTTTC
TCTCCCCTTTCATTTACAGGATTCAGAGGCAGGATTTACGGCGTTATTAG
TATTTGGTGTGATTTTCTTCGTCATTGGTATCATCTTAACCGTCATCACT
ATCGTCATCAAACGCAAGAAAGACTCTTTATTTCCTGGACTCAAATGAAA
CCATTTAGTTATTTTTAGAACTTATCTTTTATGCTTTccataaatttgta
ttttacattCAGAAAAAGCTTAATATCCCTACATTAAAGTgtgaaaaata
aagtttttcgagaatttgaccattttttgccttCTTATCGacgatttttt
aaagaaaatgtacGGAAAGGTCGATTTCTAGCCAGAGCCTACAATAAAG Coding sequence (CDS) from alignment at sc0000018:988650..990198+ >TCONS_00002097 ID=TCONS_00002097|Name=TCONS_00002097|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000018:988650..990198+ (Clytia hemisphaerica)
AAATATGAAACAAATAAGATAATCGTTTATCATAACAAGGATTGGTTTGA
AATCAACTTGTCAATGTTGATGGTGTTCGCGAAGAAATGGAAAATCTTCT
TAGGAATCGCACTAgctttgattttgattggtttagCTATGGTTATATCT
GGTTCCACATTATTAAGCCGGGCAGCTAAGGATTCAGAGGCAGGATTTAC
GGCGTTATTAGTATTTGGTGTGATTTTCTTCGTCATTGGTATCATCTTAA
CCGTCATCACTATCGTCATCAAACGCAAGAAAGACTCTTTATTTCCTGGA
CTCAAATGAAAATATGAAACAAATAAGATAATCGTTTATCATAACAAGGA
TTGGTTTGAAATCAACTTGTCAATGTTGATGGTGTTCGCGAAGAAATGGA
AAATCTTCTTAGGAATCGCACTAgctttgattttgattggtttagCTATG
GTTATATCTGGTTCCACATTATTAAGCCGGGCAGCTAAGGATTCAGAGGC
AGGATTTACGGCGTTATTAGTATTTGGTGTGATTTTCTTCGTCATTGGTA
TCATCTTAACCGTCATCACTATCGTCATCAAACGCAAGAAAGACTCTTTA
TTTCCTGGACTCAAATGAAAATATGAAACAAATAAGATAATCGTTTATCA
TAACAAGGATTGGTTTGAAATCAACTTGTCAATGTTGATGGTGTTCGCGA
AGAAATGGAAAATCTTCTTAGGAATCGCACTAgctttgattttgattggt
ttagCTATGGTTATATCTGGTTCCACATTATTAAGCCGGGCAGCTAAGGA
TTCAGAGGCAGGATTTACGGCGTTATTAGTATTTGGTGTGATTTTCTTCG
TCATTGGTATCATCTTAACCGTCATCACTATCGTCATCAAACGCAAGAAA
GACTCTTTATTTCCTGGACTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002097-exon-sc0000018-1491911889:988650..988703 | TCONS_00002097-exon-sc0000018-1491911889:988650..988703 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1510915933:988650..988703 | TCONS_00002097-exon-sc0000018-1510915933:988650..988703 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1575043694:988650..988703 | TCONS_00002097-exon-sc0000018-1575043694:988650..988703 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1491911889:989322..989449 | TCONS_00002097-exon-sc0000018-1491911889:989322..989449 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1510915933:989322..989449 | TCONS_00002097-exon-sc0000018-1510915933:989322..989449 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1575043694:989322..989449 | TCONS_00002097-exon-sc0000018-1575043694:989322..989449 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1491911889:989869..990198 | TCONS_00002097-exon-sc0000018-1491911889:989869..990198 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1510915933:989869..990198 | TCONS_00002097-exon-sc0000018-1510915933:989869..990198 | Clytia hemisphaerica | exon |
| TCONS_00002097-exon-sc0000018-1575043694:989869..990198 | TCONS_00002097-exon-sc0000018-1575043694:989869..990198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:988650..990198 + |
Blast
The following BLAST results are available for this feature:
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