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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002077 ID=TCONS_00002077|Name=TCONS_00002077|organism=Clytia hemisphaerica|type=transcript|length=1613bp
CACAGAAATTATTCGTGTAGATCAGATAATCATCAACATGAAAACACTGG
CAATATTGTTGATATGTGTCGCGGCCACATCTTGTCAAAGAGATGAGCGT
TGGTACCCGGTGGACAACTCTAATGAACTCCATGCAAGATACCCTATTGA
GGATGAAGAATACAGAGAGTCGCCGTTTGTTTCAGAAAGGAGGTATGCTG
ATCCTTTCCAAGAAAACGATATGATGCCAAACTTTTACGAAGAAATCGAC
GAAAATGTGAAGGAGAGAATCACAGGATATGAAAATGTGCCAGAAGTTTT
TCCGATACCCAAAGAAGTTACAACATCGTCTACAACTACTGGCCCTACCA
AATCTGATGCGTCCACTACAACTGCCGGCCCTACTACAACCGAATTACCA
AAATCATCTCGTATGAACTTTACTGGCCAAGTAAGACCTGGAAATCTCAC
TCAAAATTCGCAAATAATGAAGTCGAAGATTTTAGACAAAGATTTTGAAG
ACTACCTTCAAATGAAGGAACAAGAGGATCCCCTTTGGTTCAAAATACAC
AAACACAGACGACATCATAACAAGAATGTCAACATCAATCATAACTCGAA
TGTCAATATTAACTCGAATCACAACTCCAACTCGAATCACAACTCGAACA
CAAATGTCAATGTCAACCACAACCATAACTCGAACGTGAACATAAACTCC
AACCATAACTCTAACACCAATATCAACTCGAACCATAACTCGAACACCAA
TGTCAATCAAAACTCTTTTAGACCTTTCTACATTGGCAATCTCCCAAAAC
AATGGCATATTTGTGGTGGATACATCATCGACCAATTTTCGCAATTGTGT
TGTCAGGGTAACCCTGTGAACAAACAACCATTTTCCAAGTGCTGCGGctC
TGGACTTTACAACTTGATCACGGAAGATTGTGTTTCTGGTTCACCCGTTG
CCAAGAAGCTCCCAGAATGTGGTTCTTCCAAAACAACGTATGATGCTTTC
AAACAGTTTTGTTACCATGGCGATGTCTACACTTATGAAAAATATATCGA
ATGCGACGGTTCTTTGTATTATGTATAATTTTGTATGtagattttcatga
tttatttGAATATATATTGGAATTCTTTTTTGGATAATTAAATGCACAAA
CTACGCTTTCTGTTGTATTTCAAGCCAGTTAAAGTTCACTTCacaacatc
cccttctcacagactcggtgggattttatcagtcAGTGGAAATGGAAAtg
acggaccaaaactcgatggaaattgttttcatcttttttatgTCTGGGAA
Ttttaattccattgtttttagccggaaaattcagtgggggtggaaaaaat
tgcaccatattttgcagtgaagatTTGCTGATCTGATAATATTCAGCGGG
AAGATATTGTGGGActatgagaaaggggtgttttgTATATCTTCGGCGTT
TGAATGTAAGATTTTTTacctcaaaaatattttgataagtTGAATTGTGA
AGAGAAACCATTATCTATAAACCATTAACTATATTAGACACTTTGTCGTT
TATAATCCttttaaatttgaacaaatCAAACTTTACCTGATAATACCCCT
TCTCATGGACCCG Run BLAST on NCBI protein sequence of TCONS_00002077-protein >TCONS_00002077-protein ID=TCONS_00002077-protein|Name=TCONS_00002077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
TEIIRVDQIIINMKTLAILLICVAATSCQRDERWYPVDNSNELHARYPIE
DEEYRESPFVSERRYADPFQENDMMPNFYEEIDENVKERITGYENVPEVF
PIPKEVTTSSTTTGPTKSDASTTTAGPTTTELPKSSRMNFTGQVRPGNLT
QNSQIMKSKILDKDFEDYLQMKEQEDPLWFKIHKHRRHHNKNVNINHNSN
VNINSNHNSNSNHNSNTNVNVNHNHNSNVNINSNHNSNTNINSNHNSNTN
VNQNSFRPFYIGNLPKQWHICGGYIIDQFSQLCCQGNPVNKQPFSKCCGS
GLYNLITEDCVSGSPVAKKLPECGSSKTTYDAFKQFCYHGDVYTYEKYIE
CDGSLYYV Run BLAST on NCBI transcript from alignment at sc0000018:827364..829595+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002077 ID=TCONS_00002077|Name=TCONS_00002077|organism=Clytia hemisphaerica|type=transcript|length=2232bp|location=Sequence derived from alignment at sc0000018:827364..829595+ (Clytia hemisphaerica)
CACAGAAATTATTCGTGTAGATCAGGTAAGCTTCTAAATCCTTTCCTAAA
TAAAGtggaatttgtttatttttcaaatttaaaggtttttctTTGGATCA
GAATTTAACTTCACATTACCATTACTATtacaatcatgaaaaataaatta
tactTCTATGTTTCCAGATAATCATCAACATGAAAACACTGGCAATATTG
TTGATATGTGTCGCGGCCACATCTTGTCAAAGAGATGAGCGTTGGTACCC
GGTGGACAACTCTAATGAACTCCATGCAAGATACCCTATTGAGGATGAAG
AATACAGAGAGTCGCCGTTTGTTTCAGAAAGGAGGTATGCTGATCCTTTC
CAAGAAAACGATATGATGCCAAACTTTTACGAAGAAATCGACGAAAATGT
GAAGGAGAGAATCACAGGATATGAAAATGTGCCAGAAGTTTTTCCGATAC
CCAAAGAAGTTACAACATCGTCTACAACTACTGGCCCTACCAAATCTGAT
GCGTCCACTACAACTGCCGGCCCTACTACAACCGAATTACCAAAATCATC
TCGTATGAACTTTACTGGCCAAGTAAGACCTGGAAATCTCACTCAAAATT
CGCAAATAATGAAGTCGAAGATTTTAGACAAAGATTTTGAAGACTACCTT
CAAATGAAGGAACAAGAGGATCCCCTTTGGTTCAAAATACACAAACACAG
ACGACATCATAACAAGAATGTCAACATCAATCATAACTCGAATGTCAATA
TTAACTCGAATCACAACTCCAACTCGAATCACAACTCGAACACAAATGTC
AATGTCAACCACAACCATAACTCGAACGTGAACATAAACTCCAACCATAA
CTCTAACACCAATATCAACTCGAACCATAACTCGAACACCAATGTCAATC
AAAACTCTTTTAGACCTTTCTACATTGGCAATCTCCCAAAACAATGGCAT
ATTTGTAAGTTATTTCATTCACAGTACCAGAAATTTCTCTataaggaaaa
ttttgaaaggaattacaAAAAGCATCATATTCATTGCCTGACTACCAAAA
AAGTCGTTGCCTGCTGTACTTTATAGCTTGACCAACTTATAAAAGCAATA
AAAGCAATTAACATAGCTATGGTCAAAGGTAGTTCTCTCGTTTGTCTGAA
TTGAGGATTTCGAATTgactttttgcaattttgtttCAATCAGGTGGTGG
ATACATCATCGACCAATTTTCGCAATTGTGTTGTCAGGGTAACCCTGTGA
ACAAACAACCATTTTCCAAGTGCTGCGGGTAAGTTGCATcgttttttcaa
attcaattggCTTACAATGCTTGGTTTTTCATATATTTAACTGAACGATC
TATCCGATTTCGGCCCTTTCGGAGCAGCCTTTCTTGCATTTTCATGAGTT
GTTAAGGctttagaaaacaaaacaagGATTGCGCTTATGAAAATGGATTT
ATGTGGAATGGATTCCACAGATCAGCAATACTTTTTAAAACCAttctatt
tcaattttattttcagctCTGGACTTTACAACTTGATCACGGAAGATTGT
GTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCTTCCAA
AACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGATGTCTACA
CTTATGAAAAATATATCGAATGCGACGGTTCTTTGTATTATGTATAATTT
TGTATGtagattttcatgatttatttGAATATATATTGGAATTCTTTTTT
GGATAATTAAATGCACAAACTACGCTTTCTGTTGTATTTCAAGCCAGTTA
AAGTTCACTTCacaacatccccttctcacagactcggtgggattttatca
gtcAGTGGAAATGGAAAtgacggaccaaaactcgatggaaattgttttca
tcttttttatgTCTGGGAATtttaattccattgtttttagccggaaaatt
cagtgggggtggaaaaaattgcaccatattttgcagtgaagatTTGCTGA
TCTGATAATATTCAGCGGGAAGATATTGTGGGActatgagaaaggggtgt
tttgTATATCTTCGGCGTTTGAATGTAAGATTTTTTacctcaaaaatatt
ttgataagtTGAATTGTGAAGAGAAACCATTATCTATAAACCATTAACTA
TATTAGACACTTTGTCGTTTATAATCCttttaaatttgaacaaatCAAAC
TTTACCTGATAATACCCCTTCTCATGGACCCG Coding sequence (CDS) from alignment at sc0000018:827364..829595+ >TCONS_00002077 ID=TCONS_00002077|Name=TCONS_00002077|organism=Clytia hemisphaerica|type=CDS|length=4308bp|location=Sequence derived from alignment at sc0000018:827364..829595+ (Clytia hemisphaerica)
ACAGAAATTATTCGTGTAGATCAGATAATCATCAACATGAAAACACTGGC
AATATTGTTGATATGTGTCGCGGCCACATCTTGTCAAAGAGATGAGCGTT
GGTACCCGGTGGACAACTCTAATGAACTCCATGCAAGATACCCTATTGAG
GATGAAGAATACAGAGAGTCGCCGTTTGTTTCAGAAAGGAGGTATGCTGA
TCCTTTCCAAGAAAACGATATGATGCCAAACTTTTACGAAGAAATCGACG
AAAATGTGAAGGAGAGAATCACAGGATATGAAAATGTGCCAGAAGTTTTT
CCGATACCCAAAGAAGTTACAACATCGTCTACAACTACTGGCCCTACCAA
ATCTGATGCGTCCACTACAACTGCCGGCCCTACTACAACCGAATTACCAA
AATCATCTCGTATGAACTTTACTGGCCAAGTAAGACCTGGAAATCTCACT
CAAAATTCGCAAATAATGAAGTCGAAGATTTTAGACAAAGATTTTGAAGA
CTACCTTCAAATGAAGGAACAAGAGGATCCCCTTTGGTTCAAAATACACA
AACACAGACGACATCATAACAAGAATGTCAACATCAATCATAACTCGAAT
GTCAATATTAACTCGAATCACAACTCCAACTCGAATCACAACTCGAACAC
AAATGTCAATGTCAACCACAACCATAACTCGAACGTGAACATAAACTCCA
ACCATAACTCTAACACCAATATCAACTCGAACCATAACTCGAACACCAAT
GTCAATCAAAACTCTTTTAGACCTTTCTACATTGGCAATCTCCCAAAACA
ATGGCATATTTGTGGTGGATACATCATCGACCAATTTTCGCAATTGTGTT
GTCAGGGTAACCCTGTGAACAAACAACCATTTTCCAAGTGCTGCGGctCT
GGACTTTACAACTTGATCACGGAAGATTGTGTTTCTGGTTCACCCGTTGC
CAAGAAGCTCCCAGAATGTGGTTCTTCCAAAACAACGTATGATGCTTTCA
AACAGTTTTGTTACCATGGCGATGTCTACACTTATGAAAAATATATCGAA
TGCGACGGTTCTTTGTATTATGTATAAACAGAAATTATTCGTGTAGATCA
GATAATCATCAACATGAAAACACTGGCAATATTGTTGATATGTGTCGCGG
CCACATCTTGTCAAAGAGATGAGCGTTGGTACCCGGTGGACAACTCTAAT
GAACTCCATGCAAGATACCCTATTGAGGATGAAGAATACAGAGAGTCGCC
GTTTGTTTCAGAAAGGAGGTATGCTGATCCTTTCCAAGAAAACGATATGA
TGCCAAACTTTTACGAAGAAATCGACGAAAATGTGAAGGAGAGAATCACA
GGATATGAAAATGTGCCAGAAGTTTTTCCGATACCCAAAGAAGTTACAAC
ATCGTCTACAACTACTGGCCCTACCAAATCTGATGCGTCCACTACAACTG
CCGGCCCTACTACAACCGAATTACCAAAATCATCTCGTATGAACTTTACT
GGCCAAGTAAGACCTGGAAATCTCACTCAAAATTCGCAAATAATGAAGTC
GAAGATTTTAGACAAAGATTTTGAAGACTACCTTCAAATGAAGGAACAAG
AGGATCCCCTTTGGTTCAAAATACACAAACACAGACGACATCATAACAAG
AATGTCAACATCAATCATAACTCGAATGTCAATATTAACTCGAATCACAA
CTCCAACTCGAATCACAACTCGAACACAAATGTCAATGTCAACCACAACC
ATAACTCGAACGTGAACATAAACTCCAACCATAACTCTAACACCAATATC
AACTCGAACCATAACTCGAACACCAATGTCAATCAAAACTCTTTTAGACC
TTTCTACATTGGCAATCTCCCAAAACAATGGCATATTTGTGGTGGATACA
TCATCGACCAATTTTCGCAATTGTGTTGTCAGGGTAACCCTGTGAACAAA
CAACCATTTTCCAAGTGCTGCGGctCTGGACTTTACAACTTGATCACGGA
AGATTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTT
CTTCCAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGAT
GTCTACACTTATGAAAAATATATCGAATGCGACGGTTCTTTGTATTATGT
ATAAACAGAAATTATTCGTGTAGATCAGATAATCATCAACATGAAAACAC
TGGCAATATTGTTGATATGTGTCGCGGCCACATCTTGTCAAAGAGATGAG
CGTTGGTACCCGGTGGACAACTCTAATGAACTCCATGCAAGATACCCTAT
TGAGGATGAAGAATACAGAGAGTCGCCGTTTGTTTCAGAAAGGAGGTATG
CTGATCCTTTCCAAGAAAACGATATGATGCCAAACTTTTACGAAGAAATC
GACGAAAATGTGAAGGAGAGAATCACAGGATATGAAAATGTGCCAGAAGT
TTTTCCGATACCCAAAGAAGTTACAACATCGTCTACAACTACTGGCCCTA
CCAAATCTGATGCGTCCACTACAACTGCCGGCCCTACTACAACCGAATTA
CCAAAATCATCTCGTATGAACTTTACTGGCCAAGTAAGACCTGGAAATCT
CACTCAAAATTCGCAAATAATGAAGTCGAAGATTTTAGACAAAGATTTTG
AAGACTACCTTCAAATGAAGGAACAAGAGGATCCCCTTTGGTTCAAAATA
CACAAACACAGACGACATCATAACAAGAATGTCAACATCAATCATAACTC
GAATGTCAATATTAACTCGAATCACAACTCCAACTCGAATCACAACTCGA
ACACAAATGTCAATGTCAACCACAACCATAACTCGAACGTGAACATAAAC
TCCAACCATAACTCTAACACCAATATCAACTCGAACCATAACTCGAACAC
CAATGTCAATCAAAACTCTTTTAGACCTTTCTACATTGGCAATCTCCCAA
AACAATGGCATATTTGTGGTGGATACATCATCGACCAATTTTCGCAATTG
TGTTGTCAGGGTAACCCTGTGAACAAACAACCATTTTCCAAGTGCTGCGG
ctCTGGACTTTACAACTTGATCACGGAAGATTGTGTTTCTGGTTCACCCG
TTGCCAAGAAGCTCCCAGAATGTGGTTCTTCCAAAACAACGTATGATGCT
TTCAAACAGTTTTGTTACCATGGCGATGTCTACACTTATGAAAAATATAT
CGAATGCGACGGTTCTTTGTATTATGTATAAACAGAAATTATTCGTGTAG
ATCAGATAATCATCAACATGAAAACACTGGCAATATTGTTGATATGTGTC
GCGGCCACATCTTGTCAAAGAGATGAGCGTTGGTACCCGGTGGACAACTC
TAATGAACTCCATGCAAGATACCCTATTGAGGATGAAGAATACAGAGAGT
CGCCGTTTGTTTCAGAAAGGAGGTATGCTGATCCTTTCCAAGAAAACGAT
ATGATGCCAAACTTTTACGAAGAAATCGACGAAAATGTGAAGGAGAGAAT
CACAGGATATGAAAATGTGCCAGAAGTTTTTCCGATACCCAAAGAAGTTA
CAACATCGTCTACAACTACTGGCCCTACCAAATCTGATGCGTCCACTACA
ACTGCCGGCCCTACTACAACCGAATTACCAAAATCATCTCGTATGAACTT
TACTGGCCAAGTAAGACCTGGAAATCTCACTCAAAATTCGCAAATAATGA
AGTCGAAGATTTTAGACAAAGATTTTGAAGACTACCTTCAAATGAAGGAA
CAAGAGGATCCCCTTTGGTTCAAAATACACAAACACAGACGACATCATAA
CAAGAATGTCAACATCAATCATAACTCGAATGTCAATATTAACTCGAATC
ACAACTCCAACTCGAATCACAACTCGAACACAAATGTCAATGTCAACCAC
AACCATAACTCGAACGTGAACATAAACTCCAACCATAACTCTAACACCAA
TATCAACTCGAACCATAACTCGAACACCAATGTCAATCAAAACTCTTTTA
GACCTTTCTACATTGGCAATCTCCCAAAACAATGGCATATTTGTGGTGGA
TACATCATCGACCAATTTTCGCAATTGTGTTGTCAGGGTAACCCTGTGAA
CAAACAACCATTTTCCAAGTGCTGCGGctCTGGACTTTACAACTTGATCA
CGGAAGATTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGT
GGTTCTTCCAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGG
CGATGTCTACACTTATGAAAAATATATCGAATGCGACGGTTCTTTGTATT
ATGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002077-exon-sc0000018-1491911889:827364..827388 | TCONS_00002077-exon-sc0000018-1491911889:827364..827388 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1510915933:827364..827388 | TCONS_00002077-exon-sc0000018-1510915933:827364..827388 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1575043694:827364..827388 | TCONS_00002077-exon-sc0000018-1575043694:827364..827388 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1491911889:827531..828317 | TCONS_00002077-exon-sc0000018-1491911889:827531..828317 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1510915933:827531..828317 | TCONS_00002077-exon-sc0000018-1510915933:827531..828317 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1575043694:827531..828317 | TCONS_00002077-exon-sc0000018-1575043694:827531..828317 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1491911889:828557..828641 | TCONS_00002077-exon-sc0000018-1491911889:828557..828641 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1510915933:828557..828641 | TCONS_00002077-exon-sc0000018-1510915933:828557..828641 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1575043694:828557..828641 | TCONS_00002077-exon-sc0000018-1575043694:828557..828641 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1491911889:828880..829595 | TCONS_00002077-exon-sc0000018-1491911889:828880..829595 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1510915933:828880..829595 | TCONS_00002077-exon-sc0000018-1510915933:828880..829595 | Clytia hemisphaerica | exon |
| TCONS_00002077-exon-sc0000018-1575043694:828880..829595 | TCONS_00002077-exon-sc0000018-1575043694:828880..829595 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:827364..829595 + |
Blast
The following BLAST results are available for this feature:
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