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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002069 ID=TCONS_00002069|Name=TCONS_00002069|organism=Clytia hemisphaerica|type=transcript|length=2173bp
gatacattattaaaaaaatgaaaaatatcgagaaaaaaaattcatacttt
tttCATTTACGATTTGAACGTTTGAAAATCGGTTTAGAGAAAAATAGTCC
AAGATGAATCTGACTTCTCGCTTGTTTTACACTTTTGCTTTTAGTTTGGT
GTTATATACGTGTTGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACA
CTGTCTCCACAACCACACAAGCTCCACAACAACCCGCAGAAACCACCGCA
ACACCCTGTGTCTGGCAGAACTTCACCATCGCTGTCTCTTCCAATGATAC
TGTCTCTTCCAATGGTACTATCTCTTCCAATGATACTATCTCTTCCAATG
ATACTGTCTCTTCCAATGGTACATCATCAAACGTCACTTATACCACAGTG
AGTCGATGTGTCCCGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGT
CACTGATTCCGGTGACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAG
GGGGTTCAACTAATCCTCCTACCAATGGTACCAACTCAACTGATTATGGA
GGCTATACGGAGAATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGA
TAACTCTGGCGGAAGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATA
CAAGTGGCGGCGGGGACAATGCTACTACAACCATGGCGGATAATGGCGGC
GATGTGGATCCGACACAGAGTGGAAGCGCTTTCAATACAACGGAGATGAT
AACTACTGAGGTTACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAG
CTGATGGAGACGCAACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGT
GTATACCTCGATGCCAATTACAACGCTTGGGTCGATGAAATGGGATTCGA
TGCACTTAAAACTGCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCC
CGTTGACTGCTTGTAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAG
GTATTCTTAACACCATCAGAGACTGATGCAGCCTTCGATGTTCTGTACAC
CAAAGCAGAAGCGGATCAACTGCAAATAACGATCACCACATCCAACGGGA
CATCACAGACATTGCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGAC
GGGACAGACACCACGTCAATGACTCCTTACTCAGGTTCAACGAATTACCA
CAACACACAGAACGGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCA
CATGGTTGATTCTGTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTG
GTCGTTGTCGTCGTTTACATCTTTGTCatcaaaaagaaacaaaaggTTAC
ACCCTCCGCAACTGAGCTTCAGCCCAAGTCCGCAGAAGCTTGAATCAGCC
CTCAGACTCAGCAACTCCGATAGTTCCGAACCGAAACATCAACTAAACAT
GCGATGTAAACGACGTTGGAAGAACCATAACAAAAATGACGAAAAACCTT
TCCATTGAAAAAAAGAAGCCACTTCGcgttaaaaaatcttattttgtgaT
ACTTAGtgcctttttttaatttcgacGAAAGTGCATGTGTGAAAGACGCG
ACACATGATCAGTAAGTTGTGGTGAACAACTAAAATCGTTGTAAATATTG
TAATACAGTAATTTATGATTAccttttattctttttatttaaatttattc
atttatttttataattttgctACTTATTGGCACATGCTATTGTCTCTTCA
TGTTTATGTCATCACATCACATTTGTCAAAACTCTATTTGTAAATTGTAA
AGAAAATGAACATAGAAAATATCCTTAGGATTTacaaaaggtttaaaaaa
aaggCAGTAAATAACGCTgtcatttgtttaaaaaaagtaaaaacgagATA
AAGATTTGCAAAGTTTACTAGGAAAACATTTTTACACTTGATTCACTACT
TGTATATTCTTTACTAAACCTTGACCCAGGATTGAAAAGTCTTGGATGAT
GGCTTTAGTGTTCGTTTTTAGCATTGTTTCTTCGTTTGTTGTGATCTGag
gaaagaaagaaatgacATCCATGAAATCATAATCGTATAAGCACTATAGA
AATGATTTGTAATTTTGTAGAGATTATTGTTGACTTGAAATATTCAAGAA
ACTAACAATCcgttattgtaaaa Run BLAST on NCBI protein sequence of TCONS_00002069-protein >TCONS_00002069-protein ID=TCONS_00002069-protein|Name=TCONS_00002069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
MNLTSRLFYTFAFSLVLYTCCVEGATNSTGNDTVSTTTQAPQQPAETTAT
PCVWQNFTIAVSSNDTVSSNGTISSNDTISSNDTVSSNGTSSNVTYTTVS
RCVPVATTTEASDPGVTDSGDSGSNSTDPSNGGGSTNPPTNGTNSTDYGG
YTENPTGGNSTVDGGDNSGGSNSNSTVTEAPDTSGGGDNATTTMADNGGD
VDPTQSGSAFNTTEMITTEVTVTESTSAQLTEADGDATTEPAKEVSRGSV
YLDANYNAWVDEMGFDALKTAVCNETEDQIGVPLTACNVSEGSIKVTFEV
FLTPSETDAAFDVLYTKAEADQLQITITTSNGTSQTLQPVSGNYMYRGDG
TDTTSMTPYSGSTNYHNTQNGGGSSTEEDEDTTWLILLIVLLLLAIIVVV
VVVVYIFVIKKKQKVTPSATELQPKSAEA Run BLAST on NCBI transcript from alignment at sc0000018:761842..764698+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002069 ID=TCONS_00002069|Name=TCONS_00002069|organism=Clytia hemisphaerica|type=transcript|length=2857bp|location=Sequence derived from alignment at sc0000018:761842..764698+ (Clytia hemisphaerica)
gatacattattaaaaaaatgaaaaatatcgagaaaaaaaattcatacttt
tttCATTTACGATTTGAACGTTTGAAAATCGGTTTAGAGAAAAATAGTCC
AAGATGAATCTGACTTCTCGCTTGTTTTACACTTTTGGTAAGCTTTTTTT
ATGTataacagtttcaaccttttacTCCAACTCATTCATCATTTCTATTT
TTAATTAGCCTGATGAAGGGTCCCGGTAGATGTCCCTCCTTAGTCggaaa
atcagccaaaaatatTGTCCCGGTGTGAGTGATACCCGGGGCGGGCATCA
GATTTTTTCGACCTAAAAGCACAAGTTCCCAGGCGGCACATaatgttgtt
ttaacgttcatctaacgatatatggacgttgtgaacgttagataaacgtt
gaaacaacgttgtgtgcctgctGGGTTGGTATCACGTAGTTTTGGATTTT
AAGACGGGCGAAATAAAGGTTGATTTAGAAAACTTAGGAGTAGGGACCTG
TTAAATTTTATACATAACTGGAATAATATTCAGGTTTTTAGTCGTCAACG
CCAATTTAAATGACTGCTATCTTTTCATATAGCTTTTAGTTTGGTGTTAT
ATACGTGTTGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACACTGTC
TCCACAACCACACAAGCTCCACAACAACCCGCAGAAACCACCGCAACACC
CTGTGTCTGGCAGAACTTCACCATCGCTGTCTCTTCCAATGATACTGTCT
CTTCCAATGGTACTATCTCTTCCAATGATACTATCTCTTCCAATGATACT
GTCTCTTCCAATGGTACATCATCAAACGTCACTTATACCACAGTGAGTCG
ATGTGTCCCGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGTCACTG
ATTCCGGTGACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAGGGGGT
TCAACTAATCCTCCTACCAATGGTACCAACTCAACTGATTATGGAGGCTA
TACGGAGAATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGATAACT
CTGGCGGAAGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATACAAGT
GGCGGCGGGGACAATGCTACTACAACCATGGCGGATAATGGCGGCGATGT
GGATCCGACACAGAGTGGAAGCGCTTTCAATACAACGGAGATGATAACTA
CTGAGGTTACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAGCTGAT
GGAGACGCAACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGTGTATA
CCTCGATGCCAATTACAACGCTTGGGTCGATGAAATGGGATTCGATGCAC
TTAAAACTGCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCCCGTTG
ACTGCTTGTAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAGGTATT
CTTAACACCATCAGAGACTGATGCAGCCTTCGATGTTCTGTACACCAAAG
CAGAAGCGGATCAACTGCAAATAACGATCACCACATCCAACGGGACATCA
CAGACATTGCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGACGGGAC
AGACACCACGTCAATGACTCCTTACTCAGGTTCAACGAATTACCACAACA
CACAGAACGGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCACATGG
TTGATTCTGTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTGGTCGT
TGTCGTCGTTTACATCTTTGTCatcaaaaagaaacaaaaggtaACTATAC
TCGAGACTCTATAACTCTGATTCCTTTTGCTCATCTCGCATATTAGTTCA
TACCGCGTGGCGAGGAACCGATAACAACCAACAACATCAAAAACcatcaa
tcacaaaaagcaaaACAACCACGTAAAAGCAGTCATTTTAAAGAAATCAA
CATACAAAACTGCATGAAAAAGAATAATATAGTACATAAAAAGATCCTTA
cataatttcttcttttactttcattttaggTTACACCCTCCGCAACTGAG
CTTCAGCCCAAGTCCGCAGAAGCTTGAATCAGCCCTCAGACTCAGCAACT
CCGATAGTTCCGAACCGAAACATCAACTAAACATGCGATGTAAACGACGT
TGGAAGAACCATAACAAAAATGACGAAAAACCTTTCCATTGAAAAAAAGA
AGCCACTTCGcgttaaaaaatcttattttgtgaTACTTAGtgcctttttt
taatttcgacGAAAGTGCATGTGTGAAAGACGCGACACATGATCAGTAAG
TTGTGGTGAACAACTAAAATCGTTGTAAATATTGTAATACAGTAATTTAT
GATTAccttttattctttttatttaaatttattcatttatttttataatt
ttgctACTTATTGGCACATGCTATTGTCTCTTCATGTTTATGTCATCACA
TCACATTTGTCAAAACTCTATTTGTAAATTGTAAAGAAAATGAACATAGA
AAATATCCTTAGGATTTacaaaaggtttaaaaaaaaggCAGTAAATAACG
CTgtcatttgtttaaaaaaagtaaaaacgagATAAAGATTTGCAAAGTTT
ACTAGGAAAACATTTTTACACTTGATTCACTACTTGTATATTCTTTACTA
AACCTTGACCCAGGATTGAAAAGTCTTGGATGATGGCTTTAGTGTTCGTT
TTTAGCATTGTTTCTTCGTTTGTTGTGATCTGaggaaagaaagaaatgac
ATCCATGAAATCATAATCGTATAAGCACTATAGAAATGATTTGTAATTTT
GTAGAGATTATTGTTGACTTGAAATATTCAAGAAACTAACAATCcgttat
tgtaaaa Coding sequence (CDS) from alignment at sc0000018:761842..764698+ >TCONS_00002069 ID=TCONS_00002069|Name=TCONS_00002069|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at sc0000018:761842..764698+ (Clytia hemisphaerica)
ATGAATCTGACTTCTCGCTTGTTTTACACTTTTGCTTTTAGTTTGGTGTT
ATATACGTGTTGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACACTG
TCTCCACAACCACACAAGCTCCACAACAACCCGCAGAAACCACCGCAACA
CCCTGTGTCTGGCAGAACTTCACCATCGCTGTCTCTTCCAATGATACTGT
CTCTTCCAATGGTACTATCTCTTCCAATGATACTATCTCTTCCAATGATA
CTGTCTCTTCCAATGGTACATCATCAAACGTCACTTATACCACAGTGAGT
CGATGTGTCCCGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGTCAC
TGATTCCGGTGACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAGGGG
GTTCAACTAATCCTCCTACCAATGGTACCAACTCAACTGATTATGGAGGC
TATACGGAGAATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGATAA
CTCTGGCGGAAGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATACAA
GTGGCGGCGGGGACAATGCTACTACAACCATGGCGGATAATGGCGGCGAT
GTGGATCCGACACAGAGTGGAAGCGCTTTCAATACAACGGAGATGATAAC
TACTGAGGTTACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAGCTG
ATGGAGACGCAACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGTGTA
TACCTCGATGCCAATTACAACGCTTGGGTCGATGAAATGGGATTCGATGC
ACTTAAAACTGCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCCCGT
TGACTGCTTGTAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAGGTA
TTCTTAACACCATCAGAGACTGATGCAGCCTTCGATGTTCTGTACACCAA
AGCAGAAGCGGATCAACTGCAAATAACGATCACCACATCCAACGGGACAT
CACAGACATTGCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGACGGG
ACAGACACCACGTCAATGACTCCTTACTCAGGTTCAACGAATTACCACAA
CACACAGAACGGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCACAT
GGTTGATTCTGTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTGGTC
GTTGTCGTCGTTTACATCTTTGTCatcaaaaagaaacaaaaggTTACACC
CTCCGCAACTGAGCTTCAGCCCAAGTCCGCAGAAGCTTGAATGAATCTGA
CTTCTCGCTTGTTTTACACTTTTGCTTTTAGTTTGGTGTTATATACGTGT
TGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACACTGTCTCCACAAC
CACACAAGCTCCACAACAACCCGCAGAAACCACCGCAACACCCTGTGTCT
GGCAGAACTTCACCATCGCTGTCTCTTCCAATGATACTGTCTCTTCCAAT
GGTACTATCTCTTCCAATGATACTATCTCTTCCAATGATACTGTCTCTTC
CAATGGTACATCATCAAACGTCACTTATACCACAGTGAGTCGATGTGTCC
CGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGTCACTGATTCCGGT
GACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAGGGGGTTCAACTAA
TCCTCCTACCAATGGTACCAACTCAACTGATTATGGAGGCTATACGGAGA
ATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGATAACTCTGGCGGA
AGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATACAAGTGGCGGCGG
GGACAATGCTACTACAACCATGGCGGATAATGGCGGCGATGTGGATCCGA
CACAGAGTGGAAGCGCTTTCAATACAACGGAGATGATAACTACTGAGGTT
ACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAGCTGATGGAGACGC
AACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGTGTATACCTCGATG
CCAATTACAACGCTTGGGTCGATGAAATGGGATTCGATGCACTTAAAACT
GCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCCCGTTGACTGCTTG
TAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAGGTATTCTTAACAC
CATCAGAGACTGATGCAGCCTTCGATGTTCTGTACACCAAAGCAGAAGCG
GATCAACTGCAAATAACGATCACCACATCCAACGGGACATCACAGACATT
GCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGACGGGACAGACACCA
CGTCAATGACTCCTTACTCAGGTTCAACGAATTACCACAACACACAGAAC
GGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCACATGGTTGATTCT
GTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTGGTCGTTGTCGTCG
TTTACATCTTTGTCatcaaaaagaaacaaaaggTTACACCCTCCGCAACT
GAGCTTCAGCCCAAGTCCGCAGAAGCTTGAATGAATCTGACTTCTCGCTT
GTTTTACACTTTTGCTTTTAGTTTGGTGTTATATACGTGTTGCGTTGAGG
GTGCCACCAACAGCACTGGTAATGACACTGTCTCCACAACCACACAAGCT
CCACAACAACCCGCAGAAACCACCGCAACACCCTGTGTCTGGCAGAACTT
CACCATCGCTGTCTCTTCCAATGATACTGTCTCTTCCAATGGTACTATCT
CTTCCAATGATACTATCTCTTCCAATGATACTGTCTCTTCCAATGGTACA
TCATCAAACGTCACTTATACCACAGTGAGTCGATGTGTCCCGGTTGCCAC
AACAACAGAAGCCTCTGACCCTGGCGTCACTGATTCCGGTGACTCTGGAA
GTAACTCAACCGACCCTTCAAATGGAGGGGGTTCAACTAATCCTCCTACC
AATGGTACCAACTCAACTGATTATGGAGGCTATACGGAGAATCCAACTGG
GGGTAATTCAACAGTAGACGGAGGTGATAACTCTGGCGGAAGTAACTCAA
ACTCTACTGTTACTGAGGCCCCCGATACAAGTGGCGGCGGGGACAATGCT
ACTACAACCATGGCGGATAATGGCGGCGATGTGGATCCGACACAGAGTGG
AAGCGCTTTCAATACAACGGAGATGATAACTACTGAGGTTACTGTCACTG
AATCTACAAGTGCCCAACTTACTGAAGCTGATGGAGACGCAACAACCGAA
CCAGCAAAAGAAGTATCAAGAGGCAGTGTATACCTCGATGCCAATTACAA
CGCTTGGGTCGATGAAATGGGATTCGATGCACTTAAAACTGCTGTTTGTA
ATGAAACAGAAGATCAAATAGGCGTCCCGTTGACTGCTTGTAATGTCTCA
GAAGGTAGTATCAAAGTCACTTTTGAGGTATTCTTAACACCATCAGAGAC
TGATGCAGCCTTCGATGTTCTGTACACCAAAGCAGAAGCGGATCAACTGC
AAATAACGATCACCACATCCAACGGGACATCACAGACATTGCAGCCAGTC
AGCGGAAATTATATGTACCGAGGCGACGGGACAGACACCACGTCAATGAC
TCCTTACTCAGGTTCAACGAATTACCACAACACACAGAACGGTGGCGGGT
CCTCCACTGAAGAAGATGAAGATACCACATGGTTGATTCTGTTGATCGTT
TTGTTGCTATTGGCAATCATTGTGGTGGTCGTTGTCGTCGTTTACATCTT
TGTCatcaaaaagaaacaaaaggTTACACCCTCCGCAACTGAGCTTCAGC
CCAAGTCCGCAGAAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002069-exon-sc0000018-1491911889:761842..761978 | TCONS_00002069-exon-sc0000018-1491911889:761842..761978 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1510915933:761842..761978 | TCONS_00002069-exon-sc0000018-1510915933:761842..761978 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1575043694:761842..761978 | TCONS_00002069-exon-sc0000018-1575043694:761842..761978 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1491911889:762424..763631 | TCONS_00002069-exon-sc0000018-1491911889:762424..763631 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1510915933:762424..763631 | TCONS_00002069-exon-sc0000018-1510915933:762424..763631 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1575043694:762424..763631 | TCONS_00002069-exon-sc0000018-1575043694:762424..763631 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1491911889:763871..764698 | TCONS_00002069-exon-sc0000018-1491911889:763871..764698 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1510915933:763871..764698 | TCONS_00002069-exon-sc0000018-1510915933:763871..764698 | Clytia hemisphaerica | exon |
| TCONS_00002069-exon-sc0000018-1575043694:763871..764698 | TCONS_00002069-exon-sc0000018-1575043694:763871..764698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000018 | supercontig | sc0000018:761842..764698 + |
Blast
The following BLAST results are available for this feature:
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