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TCONS_00002069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002069
Unique NameTCONS_00002069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002069 ID=TCONS_00002069|Name=TCONS_00002069|organism=Clytia hemisphaerica|type=transcript|length=2173bp
gatacattattaaaaaaatgaaaaatatcgagaaaaaaaattcatacttt
tttCATTTACGATTTGAACGTTTGAAAATCGGTTTAGAGAAAAATAGTCC
AAGATGAATCTGACTTCTCGCTTGTTTTACACTTTTGCTTTTAGTTTGGT
GTTATATACGTGTTGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACA
CTGTCTCCACAACCACACAAGCTCCACAACAACCCGCAGAAACCACCGCA
ACACCCTGTGTCTGGCAGAACTTCACCATCGCTGTCTCTTCCAATGATAC
TGTCTCTTCCAATGGTACTATCTCTTCCAATGATACTATCTCTTCCAATG
ATACTGTCTCTTCCAATGGTACATCATCAAACGTCACTTATACCACAGTG
AGTCGATGTGTCCCGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGT
CACTGATTCCGGTGACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAG
GGGGTTCAACTAATCCTCCTACCAATGGTACCAACTCAACTGATTATGGA
GGCTATACGGAGAATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGA
TAACTCTGGCGGAAGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATA
CAAGTGGCGGCGGGGACAATGCTACTACAACCATGGCGGATAATGGCGGC
GATGTGGATCCGACACAGAGTGGAAGCGCTTTCAATACAACGGAGATGAT
AACTACTGAGGTTACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAG
CTGATGGAGACGCAACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGT
GTATACCTCGATGCCAATTACAACGCTTGGGTCGATGAAATGGGATTCGA
TGCACTTAAAACTGCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCC
CGTTGACTGCTTGTAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAG
GTATTCTTAACACCATCAGAGACTGATGCAGCCTTCGATGTTCTGTACAC
CAAAGCAGAAGCGGATCAACTGCAAATAACGATCACCACATCCAACGGGA
CATCACAGACATTGCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGAC
GGGACAGACACCACGTCAATGACTCCTTACTCAGGTTCAACGAATTACCA
CAACACACAGAACGGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCA
CATGGTTGATTCTGTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTG
GTCGTTGTCGTCGTTTACATCTTTGTCatcaaaaagaaacaaaaggTTAC
ACCCTCCGCAACTGAGCTTCAGCCCAAGTCCGCAGAAGCTTGAATCAGCC
CTCAGACTCAGCAACTCCGATAGTTCCGAACCGAAACATCAACTAAACAT
GCGATGTAAACGACGTTGGAAGAACCATAACAAAAATGACGAAAAACCTT
TCCATTGAAAAAAAGAAGCCACTTCGcgttaaaaaatcttattttgtgaT
ACTTAGtgcctttttttaatttcgacGAAAGTGCATGTGTGAAAGACGCG
ACACATGATCAGTAAGTTGTGGTGAACAACTAAAATCGTTGTAAATATTG
TAATACAGTAATTTATGATTAccttttattctttttatttaaatttattc
atttatttttataattttgctACTTATTGGCACATGCTATTGTCTCTTCA
TGTTTATGTCATCACATCACATTTGTCAAAACTCTATTTGTAAATTGTAA
AGAAAATGAACATAGAAAATATCCTTAGGATTTacaaaaggtttaaaaaa
aaggCAGTAAATAACGCTgtcatttgtttaaaaaaagtaaaaacgagATA
AAGATTTGCAAAGTTTACTAGGAAAACATTTTTACACTTGATTCACTACT
TGTATATTCTTTACTAAACCTTGACCCAGGATTGAAAAGTCTTGGATGAT
GGCTTTAGTGTTCGTTTTTAGCATTGTTTCTTCGTTTGTTGTGATCTGag
gaaagaaagaaatgacATCCATGAAATCATAATCGTATAAGCACTATAGA
AATGATTTGTAATTTTGTAGAGATTATTGTTGACTTGAAATATTCAAGAA
ACTAACAATCcgttattgtaaaa
Run BLAST on NCBI

protein sequence of TCONS_00002069-protein

>TCONS_00002069-protein ID=TCONS_00002069-protein|Name=TCONS_00002069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
MNLTSRLFYTFAFSLVLYTCCVEGATNSTGNDTVSTTTQAPQQPAETTAT
PCVWQNFTIAVSSNDTVSSNGTISSNDTISSNDTVSSNGTSSNVTYTTVS
RCVPVATTTEASDPGVTDSGDSGSNSTDPSNGGGSTNPPTNGTNSTDYGG
YTENPTGGNSTVDGGDNSGGSNSNSTVTEAPDTSGGGDNATTTMADNGGD
VDPTQSGSAFNTTEMITTEVTVTESTSAQLTEADGDATTEPAKEVSRGSV
YLDANYNAWVDEMGFDALKTAVCNETEDQIGVPLTACNVSEGSIKVTFEV
FLTPSETDAAFDVLYTKAEADQLQITITTSNGTSQTLQPVSGNYMYRGDG
TDTTSMTPYSGSTNYHNTQNGGGSSTEEDEDTTWLILLIVLLLLAIIVVV
VVVVYIFVIKKKQKVTPSATELQPKSAEA
Run BLAST on NCBI

transcript from alignment at sc0000018:761842..764698+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002069 ID=TCONS_00002069|Name=TCONS_00002069|organism=Clytia hemisphaerica|type=transcript|length=2857bp|location=Sequence derived from alignment at sc0000018:761842..764698+ (Clytia hemisphaerica)
gatacattattaaaaaaatgaaaaatatcgagaaaaaaaattcatacttt tttCATTTACGATTTGAACGTTTGAAAATCGGTTTAGAGAAAAATAGTCC AAGATGAATCTGACTTCTCGCTTGTTTTACACTTTTGGTAAGCTTTTTTT ATGTataacagtttcaaccttttacTCCAACTCATTCATCATTTCTATTT TTAATTAGCCTGATGAAGGGTCCCGGTAGATGTCCCTCCTTAGTCggaaa atcagccaaaaatatTGTCCCGGTGTGAGTGATACCCGGGGCGGGCATCA GATTTTTTCGACCTAAAAGCACAAGTTCCCAGGCGGCACATaatgttgtt ttaacgttcatctaacgatatatggacgttgtgaacgttagataaacgtt gaaacaacgttgtgtgcctgctGGGTTGGTATCACGTAGTTTTGGATTTT AAGACGGGCGAAATAAAGGTTGATTTAGAAAACTTAGGAGTAGGGACCTG TTAAATTTTATACATAACTGGAATAATATTCAGGTTTTTAGTCGTCAACG CCAATTTAAATGACTGCTATCTTTTCATATAGCTTTTAGTTTGGTGTTAT ATACGTGTTGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACACTGTC TCCACAACCACACAAGCTCCACAACAACCCGCAGAAACCACCGCAACACC CTGTGTCTGGCAGAACTTCACCATCGCTGTCTCTTCCAATGATACTGTCT CTTCCAATGGTACTATCTCTTCCAATGATACTATCTCTTCCAATGATACT GTCTCTTCCAATGGTACATCATCAAACGTCACTTATACCACAGTGAGTCG ATGTGTCCCGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGTCACTG ATTCCGGTGACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAGGGGGT TCAACTAATCCTCCTACCAATGGTACCAACTCAACTGATTATGGAGGCTA TACGGAGAATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGATAACT CTGGCGGAAGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATACAAGT GGCGGCGGGGACAATGCTACTACAACCATGGCGGATAATGGCGGCGATGT GGATCCGACACAGAGTGGAAGCGCTTTCAATACAACGGAGATGATAACTA CTGAGGTTACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAGCTGAT GGAGACGCAACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGTGTATA CCTCGATGCCAATTACAACGCTTGGGTCGATGAAATGGGATTCGATGCAC TTAAAACTGCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCCCGTTG ACTGCTTGTAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAGGTATT CTTAACACCATCAGAGACTGATGCAGCCTTCGATGTTCTGTACACCAAAG CAGAAGCGGATCAACTGCAAATAACGATCACCACATCCAACGGGACATCA CAGACATTGCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGACGGGAC AGACACCACGTCAATGACTCCTTACTCAGGTTCAACGAATTACCACAACA CACAGAACGGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCACATGG TTGATTCTGTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTGGTCGT TGTCGTCGTTTACATCTTTGTCatcaaaaagaaacaaaaggtaACTATAC TCGAGACTCTATAACTCTGATTCCTTTTGCTCATCTCGCATATTAGTTCA TACCGCGTGGCGAGGAACCGATAACAACCAACAACATCAAAAACcatcaa tcacaaaaagcaaaACAACCACGTAAAAGCAGTCATTTTAAAGAAATCAA CATACAAAACTGCATGAAAAAGAATAATATAGTACATAAAAAGATCCTTA cataatttcttcttttactttcattttaggTTACACCCTCCGCAACTGAG CTTCAGCCCAAGTCCGCAGAAGCTTGAATCAGCCCTCAGACTCAGCAACT CCGATAGTTCCGAACCGAAACATCAACTAAACATGCGATGTAAACGACGT TGGAAGAACCATAACAAAAATGACGAAAAACCTTTCCATTGAAAAAAAGA AGCCACTTCGcgttaaaaaatcttattttgtgaTACTTAGtgcctttttt taatttcgacGAAAGTGCATGTGTGAAAGACGCGACACATGATCAGTAAG TTGTGGTGAACAACTAAAATCGTTGTAAATATTGTAATACAGTAATTTAT GATTAccttttattctttttatttaaatttattcatttatttttataatt ttgctACTTATTGGCACATGCTATTGTCTCTTCATGTTTATGTCATCACA TCACATTTGTCAAAACTCTATTTGTAAATTGTAAAGAAAATGAACATAGA AAATATCCTTAGGATTTacaaaaggtttaaaaaaaaggCAGTAAATAACG CTgtcatttgtttaaaaaaagtaaaaacgagATAAAGATTTGCAAAGTTT ACTAGGAAAACATTTTTACACTTGATTCACTACTTGTATATTCTTTACTA AACCTTGACCCAGGATTGAAAAGTCTTGGATGATGGCTTTAGTGTTCGTT TTTAGCATTGTTTCTTCGTTTGTTGTGATCTGaggaaagaaagaaatgac ATCCATGAAATCATAATCGTATAAGCACTATAGAAATGATTTGTAATTTT GTAGAGATTATTGTTGACTTGAAATATTCAAGAAACTAACAATCcgttat tgtaaaa

Coding sequence (CDS) from alignment at sc0000018:761842..764698+

>TCONS_00002069 ID=TCONS_00002069|Name=TCONS_00002069|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at sc0000018:761842..764698+ (Clytia hemisphaerica)
ATGAATCTGACTTCTCGCTTGTTTTACACTTTTGCTTTTAGTTTGGTGTT
ATATACGTGTTGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACACTG
TCTCCACAACCACACAAGCTCCACAACAACCCGCAGAAACCACCGCAACA
CCCTGTGTCTGGCAGAACTTCACCATCGCTGTCTCTTCCAATGATACTGT
CTCTTCCAATGGTACTATCTCTTCCAATGATACTATCTCTTCCAATGATA
CTGTCTCTTCCAATGGTACATCATCAAACGTCACTTATACCACAGTGAGT
CGATGTGTCCCGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGTCAC
TGATTCCGGTGACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAGGGG
GTTCAACTAATCCTCCTACCAATGGTACCAACTCAACTGATTATGGAGGC
TATACGGAGAATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGATAA
CTCTGGCGGAAGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATACAA
GTGGCGGCGGGGACAATGCTACTACAACCATGGCGGATAATGGCGGCGAT
GTGGATCCGACACAGAGTGGAAGCGCTTTCAATACAACGGAGATGATAAC
TACTGAGGTTACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAGCTG
ATGGAGACGCAACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGTGTA
TACCTCGATGCCAATTACAACGCTTGGGTCGATGAAATGGGATTCGATGC
ACTTAAAACTGCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCCCGT
TGACTGCTTGTAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAGGTA
TTCTTAACACCATCAGAGACTGATGCAGCCTTCGATGTTCTGTACACCAA
AGCAGAAGCGGATCAACTGCAAATAACGATCACCACATCCAACGGGACAT
CACAGACATTGCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGACGGG
ACAGACACCACGTCAATGACTCCTTACTCAGGTTCAACGAATTACCACAA
CACACAGAACGGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCACAT
GGTTGATTCTGTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTGGTC
GTTGTCGTCGTTTACATCTTTGTCatcaaaaagaaacaaaaggTTACACC
CTCCGCAACTGAGCTTCAGCCCAAGTCCGCAGAAGCTTGAATGAATCTGA
CTTCTCGCTTGTTTTACACTTTTGCTTTTAGTTTGGTGTTATATACGTGT
TGCGTTGAGGGTGCCACCAACAGCACTGGTAATGACACTGTCTCCACAAC
CACACAAGCTCCACAACAACCCGCAGAAACCACCGCAACACCCTGTGTCT
GGCAGAACTTCACCATCGCTGTCTCTTCCAATGATACTGTCTCTTCCAAT
GGTACTATCTCTTCCAATGATACTATCTCTTCCAATGATACTGTCTCTTC
CAATGGTACATCATCAAACGTCACTTATACCACAGTGAGTCGATGTGTCC
CGGTTGCCACAACAACAGAAGCCTCTGACCCTGGCGTCACTGATTCCGGT
GACTCTGGAAGTAACTCAACCGACCCTTCAAATGGAGGGGGTTCAACTAA
TCCTCCTACCAATGGTACCAACTCAACTGATTATGGAGGCTATACGGAGA
ATCCAACTGGGGGTAATTCAACAGTAGACGGAGGTGATAACTCTGGCGGA
AGTAACTCAAACTCTACTGTTACTGAGGCCCCCGATACAAGTGGCGGCGG
GGACAATGCTACTACAACCATGGCGGATAATGGCGGCGATGTGGATCCGA
CACAGAGTGGAAGCGCTTTCAATACAACGGAGATGATAACTACTGAGGTT
ACTGTCACTGAATCTACAAGTGCCCAACTTACTGAAGCTGATGGAGACGC
AACAACCGAACCAGCAAAAGAAGTATCAAGAGGCAGTGTATACCTCGATG
CCAATTACAACGCTTGGGTCGATGAAATGGGATTCGATGCACTTAAAACT
GCTGTTTGTAATGAAACAGAAGATCAAATAGGCGTCCCGTTGACTGCTTG
TAATGTCTCAGAAGGTAGTATCAAAGTCACTTTTGAGGTATTCTTAACAC
CATCAGAGACTGATGCAGCCTTCGATGTTCTGTACACCAAAGCAGAAGCG
GATCAACTGCAAATAACGATCACCACATCCAACGGGACATCACAGACATT
GCAGCCAGTCAGCGGAAATTATATGTACCGAGGCGACGGGACAGACACCA
CGTCAATGACTCCTTACTCAGGTTCAACGAATTACCACAACACACAGAAC
GGTGGCGGGTCCTCCACTGAAGAAGATGAAGATACCACATGGTTGATTCT
GTTGATCGTTTTGTTGCTATTGGCAATCATTGTGGTGGTCGTTGTCGTCG
TTTACATCTTTGTCatcaaaaagaaacaaaaggTTACACCCTCCGCAACT
GAGCTTCAGCCCAAGTCCGCAGAAGCTTGAATGAATCTGACTTCTCGCTT
GTTTTACACTTTTGCTTTTAGTTTGGTGTTATATACGTGTTGCGTTGAGG
GTGCCACCAACAGCACTGGTAATGACACTGTCTCCACAACCACACAAGCT
CCACAACAACCCGCAGAAACCACCGCAACACCCTGTGTCTGGCAGAACTT
CACCATCGCTGTCTCTTCCAATGATACTGTCTCTTCCAATGGTACTATCT
CTTCCAATGATACTATCTCTTCCAATGATACTGTCTCTTCCAATGGTACA
TCATCAAACGTCACTTATACCACAGTGAGTCGATGTGTCCCGGTTGCCAC
AACAACAGAAGCCTCTGACCCTGGCGTCACTGATTCCGGTGACTCTGGAA
GTAACTCAACCGACCCTTCAAATGGAGGGGGTTCAACTAATCCTCCTACC
AATGGTACCAACTCAACTGATTATGGAGGCTATACGGAGAATCCAACTGG
GGGTAATTCAACAGTAGACGGAGGTGATAACTCTGGCGGAAGTAACTCAA
ACTCTACTGTTACTGAGGCCCCCGATACAAGTGGCGGCGGGGACAATGCT
ACTACAACCATGGCGGATAATGGCGGCGATGTGGATCCGACACAGAGTGG
AAGCGCTTTCAATACAACGGAGATGATAACTACTGAGGTTACTGTCACTG
AATCTACAAGTGCCCAACTTACTGAAGCTGATGGAGACGCAACAACCGAA
CCAGCAAAAGAAGTATCAAGAGGCAGTGTATACCTCGATGCCAATTACAA
CGCTTGGGTCGATGAAATGGGATTCGATGCACTTAAAACTGCTGTTTGTA
ATGAAACAGAAGATCAAATAGGCGTCCCGTTGACTGCTTGTAATGTCTCA
GAAGGTAGTATCAAAGTCACTTTTGAGGTATTCTTAACACCATCAGAGAC
TGATGCAGCCTTCGATGTTCTGTACACCAAAGCAGAAGCGGATCAACTGC
AAATAACGATCACCACATCCAACGGGACATCACAGACATTGCAGCCAGTC
AGCGGAAATTATATGTACCGAGGCGACGGGACAGACACCACGTCAATGAC
TCCTTACTCAGGTTCAACGAATTACCACAACACACAGAACGGTGGCGGGT
CCTCCACTGAAGAAGATGAAGATACCACATGGTTGATTCTGTTGATCGTT
TTGTTGCTATTGGCAATCATTGTGGTGGTCGTTGTCGTCGTTTACATCTT
TGTCatcaaaaagaaacaaaaggTTACACCCTCCGCAACTGAGCTTCAGC
CCAAGTCCGCAGAAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001087XLOC_001087Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002069-proteinTCONS_00002069-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002069-exon-sc0000018-1491911889:761842..761978TCONS_00002069-exon-sc0000018-1491911889:761842..761978Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1510915933:761842..761978TCONS_00002069-exon-sc0000018-1510915933:761842..761978Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1575043694:761842..761978TCONS_00002069-exon-sc0000018-1575043694:761842..761978Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1491911889:762424..763631TCONS_00002069-exon-sc0000018-1491911889:762424..763631Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1510915933:762424..763631TCONS_00002069-exon-sc0000018-1510915933:762424..763631Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1575043694:762424..763631TCONS_00002069-exon-sc0000018-1575043694:762424..763631Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1491911889:763871..764698TCONS_00002069-exon-sc0000018-1491911889:763871..764698Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1510915933:763871..764698TCONS_00002069-exon-sc0000018-1510915933:763871..764698Clytia hemisphaericaexon
TCONS_00002069-exon-sc0000018-1575043694:763871..764698TCONS_00002069-exon-sc0000018-1575043694:763871..764698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:761842..764698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0271475 0 0 0.0478748 0.366216 0.175291 0.0434622 0.235768 35.8758 27.6218 0.0690807 0.0473273 0.256427 0.604476 150.026 119.599 12.6356 7.9426 1.22789 4.19676 4.9935 27.9323 0 0 0 0.0219517
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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