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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002059 ID=TCONS_00002059|Name=TCONS_00002059|organism=Clytia hemisphaerica|type=transcript|length=2602bpRun BLAST on NCBI protein sequence of TCONS_00002059-protein >TCONS_00002059-protein ID=TCONS_00002059-protein|Name=TCONS_00002059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp MADRLRDELNDSKEEEEENFWKQILREVSAKSSRRFPSCKRILVLGNDGTRun BLAST on NCBI transcript from alignment at sc0000018:698064..722166+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002059 ID=TCONS_00002059|Name=TCONS_00002059|organism=Clytia hemisphaerica|type=transcript|length=24103bp|location=Sequence derived from alignment at sc0000018:698064..722166+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:698064..722166+ >TCONS_00002059 ID=TCONS_00002059|Name=TCONS_00002059|organism=Clytia hemisphaerica|type=CDS|length=18408bp|location=Sequence derived from alignment at sc0000018:698064..722166+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002059 vs. Swiss-Prot (Human)
Match: DC1L2 (Cytoplasmic dynein 1 light intermediate chain 2 OS=Homo sapiens GN=DYNC1LI2 PE=1 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 1.381e-110 Identity = 190/457 (41.58%), Postives = 281/457 (61.49%), Query Frame = 3
Query: 360 NFWKQILREVSAKSSRRFPSCKRILVLGNDGTGKTSLVMKLRRSGDDLLRGSGLEYTYLDVDDEERDEHTRLSVWIQSGEAHIKDLMKYVITKESIHHSLILLCIDISKPWNMLDQLENHVNILRQHLHTLNISAKILNELEKQVLRDFHMYKYNDE-----ENKRLSSNMEQDEQEMN-QLAENMIVDNIGLPIVVAVTKTDNMSSLEQEHDYREEHFDFIQKNLRKFCLKCGASLIYTSTKENCNTSVLYKYLLHRLYNFPLKDPAQIVEKDAIYIPAGWDNQSKINILDEHIKTFDANETFKDRIVKPVTRKYVNQEKEVVAEDEQKFLEAQMAILSKEPAPSSSAQRGPPSQDARASARMQGHSPGQRATGLPRPAAMPNMK-GKPDP-TKGGAAGQNSSETVLANFFNSLLNKNSTXXXXXXXXXXXXXXXXXXNR---SDVQAELEKMSRK 1697
+ W IL EVS ++ + PS K ILV G DG+GKT+L+ KL+ + +G GLEY YL V DE+RD+HTR +VWI G+ + K L+K+ ++ ES+ +L++ D+S+PW +++ L+ ++LR+H+ + I + + ELE++ ++DF Y +E +R DE+ + L +N++ N+G+P++V TK D +S LE+EHDYR+EH DFIQ +LR+FCL+ GA+LIYTS KE N +LYKY++H+ Y F PA +VEKDA++IPAGWDN+ KI IL E+ T + ++D IVKP RK V+ +KE+ AEDEQ FL Q ++L+K+PA + A P++ S R QG R P++ P KPDP K AA SE VLA+FFNSLL+K + G A + + S+VQ EL++M+RK
Sbjct: 34 SLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQ-GAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVH-DKELAAEDEQVFLMKQQSLLAKQPATPTRASES-PARGPSGSPRTQG-----RGGPASVPSSSPGTSVKKPDPNIKNNAA----SEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRK 478 The following BLAST results are available for this feature:
BLAST of TCONS_00002059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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