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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002056 ID=TCONS_00002056|Name=TCONS_00002056|organism=Clytia hemisphaerica|type=transcript|length=2863bpRun BLAST on NCBI protein sequence of TCONS_00002056-protein >TCONS_00002056-protein ID=TCONS_00002056-protein|Name=TCONS_00002056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MTEINEPNESRIQEETVSSLSEDVDLKSQKTVDENQNGESGTDDQKEAASRun BLAST on NCBI transcript from alignment at sc0000018:680602..693507+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002056 ID=TCONS_00002056|Name=TCONS_00002056|organism=Clytia hemisphaerica|type=transcript|length=12906bp|location=Sequence derived from alignment at sc0000018:680602..693507+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:680602..693507+ >TCONS_00002056 ID=TCONS_00002056|Name=TCONS_00002056|organism=Clytia hemisphaerica|type=CDS|length=13797bp|location=Sequence derived from alignment at sc0000018:680602..693507+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002056 vs. Swiss-Prot (Human)
Match: MCES (mRNA cap guanine-N7 methyltransferase OS=Homo sapiens GN=RNMT PE=1 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 5.933e-93 Identity = 168/341 (49.27%), Postives = 234/341 (68.62%), Query Frame = 3
Query: 657 DESLGSAVAKHYNEIPAGSRETRKDSRIFHLRNFNNWIKSVIINEYLDKIKRRKRTSDDINVXXXXXXXXXXXXXXXXXRVDHVIMADIAATSVDQCKERYSKLERDRRRGSHSRVFSTEFFAADCTKEVISEKYKKKEIKLDLTSCQFAFHYSFESYDQADIMLRNACQNLRVGGYFIGTTADSNKLVKRIKECKEADSFGNSVFNIKSNHRDNFPLFGSKYTFFLEGVVDCPEFLVHFPTMEALAAKYNMKLVWKKNFHEIFKEHER--QHSTLLNKMNALETYPAPANKTLLGGSESQYKSACDYLERKSCS-QVGTLSADEWEVAGLYVAFAFEKME 1670
+E S VA HYNE+ E R SRIF+LRNFNNW+KSV+I E+L+K++++K+ DI VLDLGCGKGGDLLKW KGR++ ++ DIA SV QC++RY + ++RR + +FS EF AD +KE++ +K++ ++ D+ SCQF HYSFESY+QAD+MLRNAC+ L GGYFIGTT +S +L++R+ E E +SFGN ++ +K + ++PLFG KY F LEGVVD PEFLV+FP + +A KYNMKLV+KK F E ++E + ++ LL +M ALE YPA + L+ Y+ A Y++ +GTLS EWE +Y+ FAFEK +
Sbjct: 142 EEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKR--DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDM-KNRRDSEY--IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRL-EASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQQ 476 The following BLAST results are available for this feature:
BLAST of TCONS_00002056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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