TCONS_00002055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002055
Unique NameTCONS_00002055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002055 ID=TCONS_00002055|Name=TCONS_00002055|organism=Clytia hemisphaerica|type=transcript|length=1029bp
aatatttcATTTGAAAGTCCCTTCTCTAGCTGAATCTATAAAAATAAATG
ATATAAATTATACATAAAATCATCACTGAGAAAAATTAACACACAATGGA
TGATGAAGTAGGTCAAGGAACATACGAAGGTCGAAGACAGCAAGGTTTCA
CCCTCGATTTCGTTCGCTCACCACCTGGTATCCTATTGGTTGTCAATACG
GTTATTTTGTTTCTGTGCTGGACCATCATAGCTGGTTGGAGGACGCAAGT
TCATCCATACATCGGAGTTTATTATGAGGGAAATACTGGATATTACCTCA
CAACCACCATCATACCATTTCTTATTCTGTTGACCGTCTTTGTGCTTAAG
ATGTTAAGACTGCACAAGAAAATTCCCAAAATCGTCAATTGGTCTTTGAC
AATGGCAATCAATTGTGCTGTTTGGTCGGTGCTTCTCTTCATCTCGTCCT
GTGTGGTGGGTGACATGGCAAGAAAATTGAATCCTGCATGTGAAGTTTAT
TTATGTCATCATCTTGGCGCATGCGCGGCTTTTGGATTTTTCGGATGTAT
TGGTTTAGGCGCACAAGCCTTTTTACATTTCCGCGAATGGCGTCAAAAAT
CGGCCGGTGGACTTCATAGCGCCACAAAGTCTTCAGGTGACGGAGCTGAT
GTTGAATAGGATTCTTACACGTATTATAAACATGTATCATAAAATGCTGA
TATCAGCACAAAGTctaaatataaatttttcaattttatcttttacgaat
tttatcttgaaataattttatgATCGTTATGACCACTCGATGTATATTTT
AACGAATACTATTCTATGAAATTTCATTTACTGATCATTCTTCaaaacga
ttttaaaattttttattttttccaggAGTTTAAGACGGGGTCAAAATGCT
TTCAAATCTCACAATCTGAAAACATCTATCTAAACTGAATCTTATTCTAC
TTTCATTAATGTTAATGagcttttaaaaatgatttgtaactttttaagta
ttttgaccctttttcaaGCATTTTGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00002055-protein

>TCONS_00002055-protein ID=TCONS_00002055-protein|Name=TCONS_00002055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MDDEVGQGTYEGRRQQGFTLDFVRSPPGILLVVNTVILFLCWTIIAGWRT
QVHPYIGVYYEGNTGYYLTTTIIPFLILLTVFVLKMLRLHKKIPKIVNWS
LTMAINCAVWSVLLFISSCVVGDMARKLNPACEVYLCHHLGACAAFGFFG
CIGLGAQAFLHFREWRQKSAGGLHSATKSSGDGADVE
Run BLAST on NCBI

transcript from alignment at sc0000018:669439..672664+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002055 ID=TCONS_00002055|Name=TCONS_00002055|organism=Clytia hemisphaerica|type=transcript|length=3226bp|location=Sequence derived from alignment at sc0000018:669439..672664+ (Clytia hemisphaerica)
aatatttcATTTGAAAGTCCCTTCTCTAGCTGAATCTATAAAAATAAATG
ATATAAATTATACATAAAATCATCACTGAGAAAAATTAACACACAATGGA
TGATGAAGTAGGTCAAGGAACATACGAAGGTCGAAGACAGCAAGGTTTCA
CCCTCGATTTCGTTCGCTCACCACCTGGTATCCTATTGGTTGTCAATACG
GTAAGGAAATGTCAATCAATCGGTGAATAAATGTGAATTTGGGAGAAATG
AGGAAGGGAAGTTTCTGCTcgtgttttgaaattttattatattgggctct
ttcagaaaaaatccgttcattgGAGGTGGAGgatgtattattttttcaat
gaattacctctaaacattttcatttttcacgcCATGGACAATCATCAATC
TAACGAATTAGACACCAAACTTACCCCTGGACACCGCAGACTTTTTTTGG
AACCCTTGGACAATTCATCCtacccccatgaacggattttttctggggAA
GAGCTCATTTTATATTTATTGTATTAATACTTTACCGGATACCAAGTCTA
GCCAAGATGAAACAAGCTCTTTACATTAACGCTTTCTTCCAATAGGTTAT
TTTGTTTCTGTGCTGGACCATCATAGCTGGTTGGAGGACGCAAGTTCATC
CATACATCGGAGTTTATTATGAGGGAAATACTGGATATTACCTCACAACC
ACCATCATACCATTTCTTATTCTGTTGACCGTCTTTGTGCTTAAGATGTT
AAGACTGCACAAGAAAATTCCCAAAATCGTCAATTGGTCTTTGACAGTAA
GTAAGCTTTAATCCATTTGAAAAGGTTTCGCACGAGCTTTGCATATTATG
AGCtgtaaacataaaatatcatcCACATCATCCAAGTCATATCCCAAGCT
CTTATTTGTTGGGGATTCTATCCCATCAACGGAATTGGGTGTAATGTAAT
CTCAAACCAGATCATCCATTCCGTGCAAAACAACGCTTTGCTCTAGAGAG
ATATGACGAATGTGACGATCCGGCCTAgttgttcagccaaaacaaTCGCA
AAACCGTGTTTCGAAAAAGAAAGCGATTAGGTTATAATGATTATGTTTAT
GATTGGTGTTTGATTCTGGTGTGGCCGTTTTTTGTTTTAGTCAAAGTAGT
CCGCAAATAATAATACAAGTCTAATGTGCAAAGCATCGGAATCTGCTCGG
GGATAAGGggtttttaaggaaaaaaattctatctaaaaaataaaacgtcA
GTGAGAACATTCATTACGTCAATAAAtaatggttttattttttttttcgt
tctttaaAGTTCGCGAAATTGATGCTTATGGTGACGATAAGTGACACCCT
GAATAcgaaagaaaattatgaaaatatgatgaatgatgaattttgCGCTT
ATGTATTACAGTGAAGTGAATACGGTTGCTCTATCTAGTGGTAATTGAGT
CCTCGGATTCCACATGGACCtgtagctcaatggtagagcaaatgcccgcg
aatggcatggttgtgagttcgactctcgccggatccgttggttttccaac
tgTTCTGGTGactggtcagaagacaacatgaaaatatttattcaaaattc
tattttatAGATGGCAATCAATTGTGCTGTTTGGTCGGTGCTTCTCTTCA
TCTCGTCCTGTGTGGTGGGTGACATGGCAAGAAAATTGAATCCTGCATGT
GAAGTTTATTTATGTCATCATCTTGGCGCATGCGCGGTAAGTAATTATTA
TTGTTTGTCTGGAAatttcacccctgtctcaagtgCCCCGGTGCAGTATT
TTTTCCTAGCGGTtggtataatatttttttaatcaaaatcaaggtgggga
tggaaattctattgttcctacCTGTAAAAGTCCGGTGGGGATGGTTGTGG
AGTAAGTAATTTGCTTTCATTAATTTCAAATAGGGATGACAGTCAATTCC
CTAGTGAGATTGAAACTGTAGGGTATATGTATTTTTCTTACCGGGTGCAA
GCTTTAGTTAGACCAAATTCATAGTTGGGCGGGGTCATAGGGTCTTTGAT
AAAGTAAAGGAATCGCAGCAGAAGCGTCAAAAGTTATTAAATAATTTAGC
CAAAACTCGTAGCCCTAAAAATTCGAAATAAATGGATTTATACCATTGGA
TAGATAATAAAATTATGAACAGAAAAGTTTACAACAACAAGTCTTTTGTA
TTTTCAGCACCCCCTAGCTCGGGAAGGGGGGTATTAGGTTTACATGATAA
CGGAGGGTGCCGCCCAGCTCTCCCGCCGAACCATTATTCGACCAAATTTC
GATGTTTCTGGgagcaaaaattcaaattatccTATTTATCCACCTTAACT
TGCCTAAGCCCCCCCCTCCCCCGCCAGGCCCTGGTTCAAATGTAAGGACG
AAGAATGTTACCGCGACATGAATAAGGTAACTGTAAATGAGGAAGTCAAA
ATATTGGTCGAAATACTCATTGCAGTTGAagctctctaatttgatcttca
aaagaaattgaattttcatcgaataagggagcgtcgtttatgagagttta
ttgttgacggggactttaaatttcatcgaataaggggccccccgaatagt
agaacgtcgagtTAGAGAGCGCCAATTGTACTTACTTCACGTTGTACTTA
CTCAAATGCACTTTACTTTTGCAAAAATTGAACAATGAGgtaaatatttt
atattttccatttctttttcaCAGGCTTTTGGATTTTTCGGATGTATTGG
TTTAGGCGCACAAGCCTTTTTACATTTCCGCGAATGGCGTCAAAAATCGG
CCGGTGGACTTCATAGCGCCACAAAGTCTTCAGGTGACGGAGCTGATGTT
GAATAGGATTCTTACACGTATTATAAACATGTATCATAAAATGCTGATAT
CAGCACAAAGTctaaatataaatttttcaattttatcttttacgaatttt
atcttgaaataattttatgATCGTTATGACCACTCGATGTATATTTTAAC
GAATACTATTCTATGAAATTTCATTTACTGATCATTCTTCaaaacgattt
taaaattttttattttttccaggAGTTTAAGACGGGGTCAAAATGCTTTC
AAATCTCACAATCTGAAAACATCTATCTAAACTGAATCTTATTCTACTTT
CATTAATGTTAATGagcttttaaaaatgatttgtaactttttaagtattt
tgaccctttttcaaGCATTTTGAAAC

Coding sequence (CDS) from alignment at sc0000018:669439..672664+

>TCONS_00002055 ID=TCONS_00002055|Name=TCONS_00002055|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0000018:669439..672664+ (Clytia hemisphaerica)
ATGGATGATGAAGTAGGTCAAGGAACATACGAAGGTCGAAGACAGCAAGG
TTTCACCCTCGATTTCGTTCGCTCACCACCTGGTATCCTATTGGTTGTCA
ATACGGTTATTTTGTTTCTGTGCTGGACCATCATAGCTGGTTGGAGGACG
CAAGTTCATCCATACATCGGAGTTTATTATGAGGGAAATACTGGATATTA
CCTCACAACCACCATCATACCATTTCTTATTCTGTTGACCGTCTTTGTGC
TTAAGATGTTAAGACTGCACAAGAAAATTCCCAAAATCGTCAATTGGTCT
TTGACAATGGCAATCAATTGTGCTGTTTGGTCGGTGCTTCTCTTCATCTC
GTCCTGTGTGGTGGGTGACATGGCAAGAAAATTGAATCCTGCATGTGAAG
TTTATTTATGTCATCATCTTGGCGCATGCGCGGCTTTTGGATTTTTCGGA
TGTATTGGTTTAGGCGCACAAGCCTTTTTACATTTCCGCGAATGGCGTCA
AAAATCGGCCGGTGGACTTCATAGCGCCACAAAGTCTTCAGGTGACGGAG
CTGATGTTGAATAGATGGATGATGAAGTAGGTCAAGGAACATACGAAGGT
CGAAGACAGCAAGGTTTCACCCTCGATTTCGTTCGCTCACCACCTGGTAT
CCTATTGGTTGTCAATACGGTTATTTTGTTTCTGTGCTGGACCATCATAG
CTGGTTGGAGGACGCAAGTTCATCCATACATCGGAGTTTATTATGAGGGA
AATACTGGATATTACCTCACAACCACCATCATACCATTTCTTATTCTGTT
GACCGTCTTTGTGCTTAAGATGTTAAGACTGCACAAGAAAATTCCCAAAA
TCGTCAATTGGTCTTTGACAATGGCAATCAATTGTGCTGTTTGGTCGGTG
CTTCTCTTCATCTCGTCCTGTGTGGTGGGTGACATGGCAAGAAAATTGAA
TCCTGCATGTGAAGTTTATTTATGTCATCATCTTGGCGCATGCGCGGCTT
TTGGATTTTTCGGATGTATTGGTTTAGGCGCACAAGCCTTTTTACATTTC
CGCGAATGGCGTCAAAAATCGGCCGGTGGACTTCATAGCGCCACAAAGTC
TTCAGGTGACGGAGCTGATGTTGAATAGATGGATGATGAAGTAGGTCAAG
GAACATACGAAGGTCGAAGACAGCAAGGTTTCACCCTCGATTTCGTTCGC
TCACCACCTGGTATCCTATTGGTTGTCAATACGGTTATTTTGTTTCTGTG
CTGGACCATCATAGCTGGTTGGAGGACGCAAGTTCATCCATACATCGGAG
TTTATTATGAGGGAAATACTGGATATTACCTCACAACCACCATCATACCA
TTTCTTATTCTGTTGACCGTCTTTGTGCTTAAGATGTTAAGACTGCACAA
GAAAATTCCCAAAATCGTCAATTGGTCTTTGACAATGGCAATCAATTGTG
CTGTTTGGTCGGTGCTTCTCTTCATCTCGTCCTGTGTGGTGGGTGACATG
GCAAGAAAATTGAATCCTGCATGTGAAGTTTATTTATGTCATCATCTTGG
CGCATGCGCGGCTTTTGGATTTTTCGGATGTATTGGTTTAGGCGCACAAG
CCTTTTTACATTTCCGCGAATGGCGTCAAAAATCGGCCGGTGGACTTCAT
AGCGCCACAAAGTCTTCAGGTGACGGAGCTGATGTTGAATAGATGGATGA
TGAAGTAGGTCAAGGAACATACGAAGGTCGAAGACAGCAAGGTTTCACCC
TCGATTTCGTTCGCTCACCACCTGGTATCCTATTGGTTGTCAATACGGTT
ATTTTGTTTCTGTGCTGGACCATCATAGCTGGTTGGAGGACGCAAGTTCA
TCCATACATCGGAGTTTATTATGAGGGAAATACTGGATATTACCTCACAA
CCACCATCATACCATTTCTTATTCTGTTGACCGTCTTTGTGCTTAAGATG
TTAAGACTGCACAAGAAAATTCCCAAAATCGTCAATTGGTCTTTGACAAT
GGCAATCAATTGTGCTGTTTGGTCGGTGCTTCTCTTCATCTCGTCCTGTG
TGGTGGGTGACATGGCAAGAAAATTGAATCCTGCATGTGAAGTTTATTTA
TGTCATCATCTTGGCGCATGCGCGGCTTTTGGATTTTTCGGATGTATTGG
TTTAGGCGCACAAGCCTTTTTACATTTCCGCGAATGGCGTCAAAAATCGG
CCGGTGGACTTCATAGCGCCACAAAGTCTTCAGGTGACGGAGCTGATGTT
GAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001081XLOC_001081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002055-exon-sc0000018-1491911889:669439..669638TCONS_00002055-exon-sc0000018-1491911889:669439..669638Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1510915933:669439..669638TCONS_00002055-exon-sc0000018-1510915933:669439..669638Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1575043694:669439..669638TCONS_00002055-exon-sc0000018-1575043694:669439..669638Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1491911889:670034..670234TCONS_00002055-exon-sc0000018-1491911889:670034..670234Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1510915933:670034..670234TCONS_00002055-exon-sc0000018-1510915933:670034..670234Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1575043694:670034..670234TCONS_00002055-exon-sc0000018-1575043694:670034..670234Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1491911889:671049..671174TCONS_00002055-exon-sc0000018-1491911889:671049..671174Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1510915933:671049..671174TCONS_00002055-exon-sc0000018-1510915933:671049..671174Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1575043694:671049..671174TCONS_00002055-exon-sc0000018-1575043694:671049..671174Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1491911889:672163..672664TCONS_00002055-exon-sc0000018-1491911889:672163..672664Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1510915933:672163..672664TCONS_00002055-exon-sc0000018-1510915933:672163..672664Clytia hemisphaericaexon
TCONS_00002055-exon-sc0000018-1575043694:672163..672664TCONS_00002055-exon-sc0000018-1575043694:672163..672664Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002055-proteinTCONS_00002055-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:669439..672664 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28329	4.0925	0.979749	1.10231	5.71791	4.19563	40.6616	40.6186	53.5219	48.999	43.79	28.8146	38.5867	34.1559	41.9369	54.8915	25.4962	18.9421	32.5625	30.9941	13.7208	13.283	13.0964	10.0123	11.8918	17.9926	1.89842	3.60889	25.9796	20.5001
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008253Marvel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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