Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002023
Unique NameTCONS_00002023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002023 ID=TCONS_00002023|Name=TCONS_00002023|organism=Clytia hemisphaerica|type=transcript|length=1143bp
TTTTTGACTTCATTTCGATCACTTTACAAACTTTTAGTCAAGAGGAAGGG
TGTAGAGTTACACAACTTATTACACATACACTCAACACAAAGTGAGGCAT
AGTAGCTGTGTTAGATGCATGATATGTACACGATGTTGTCGAAAAGGATG
AATTTAATACTATTCTTGGGCGTAATTTTTTGGTGCGCTGTTTTTGTCCA
TTCTTCAACGGCCGATGACTATTTGAACAAATGTATCTCATCTACAAACC
ATAAAAACGTACCAGGAAAAGAAGGTAAAGCCATGGAAAATTATCACTGT
ACACCTTGGCAAAACAAATCATGCTGTACTTGGAATACAACCGATAATAT
TGACAAAGACGGCGCCCTGTCACTGTACAACATCGTTTGGGATCAATGTc
cgaaaattcaaaacatgTCTGACAAATGCAAGCAACATTTCAAACGGGAT
ACTTGTTTCTATGAATGTTCTCCAAACCTTGGACCATGGATCGTCGCTGA
TACGACTTCCAAGAAAACCCGGAAAGAAAGAGTCCGAAATGTTCCGATTT
GTAAATCCGATTGTGAAGCATGGTTTTCGGATTGTAGTGAGGATTACACG
TGCAATGATAATTGGGCTACTGGATGGGACTGGTCAAAGAAAGGAACACC
AACTATGTGTCCAAAATCGTGCAAGAAGTTCAAGGATTATTTCTCGTCTG
CTAAACAGTTCTGTGAGAAGCTTTTCGACGGATCGTTCGTGTATTCTGAA
AACAACGAAAACTGCATGAACATGGTACCTGTCGGTGATAACAATGTTAA
AGTATCCGAAAAAAAAGCAGAAGATCTAGCTTCAACTGCTGCTCGCATTC
AACAATCGATATTTGGAGTTTTACTTTCTAGCTTGATTTATAATTTACTA
TtttgaaatagagaaaaaaagtaATCGTGAAATAACTCGGGAAAAAAGCT
AAATTAATGGTAccctatcaaattttatttgtCAATCTTTTTAAGTGTTA
TCGTTGCCCTTTATTCAGCAATTGTTGTACGTTTATAATAACTAAGTAAT
TCTTGTATCTTATCCgtaataattttttatgatgaaTTATAAGCCTGTGT
CACAAAATTGAGAAAGAAACTCAGCTTTTTTACGCCACTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00002023-protein

>TCONS_00002023-protein ID=TCONS_00002023-protein|Name=TCONS_00002023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MHDMYTMLSKRMNLILFLGVIFWCAVFVHSSTADDYLNKCISSTNHKNVP
GKEGKAMENYHCTPWQNKSCCTWNTTDNIDKDGALSLYNIVWDQCPKIQN
MSDKCKQHFKRDTCFYECSPNLGPWIVADTTSKKTRKERVRNVPICKSDC
EAWFSDCSEDYTCNDNWATGWDWSKKGTPTMCPKSCKKFKDYFSSAKQFC
EKLFDGSFVYSENNENCMNMVPVGDNNVKVSEKKAEDLASTAARIQQSIF
GVLLSSLIYNLLF
Run BLAST on NCBI

transcript from alignment at sc0000012:910549..911691

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002023 ID=TCONS_00002023|Name=TCONS_00002023|organism=Clytia hemisphaerica|type=transcript|length=1143bp|location=Sequence derived from alignment at sc0000012:910549..911691 (Clytia hemisphaerica)
GAAAAGTGGCGTAAAAAAGCTGAGTTTCTTTCTCAATTTTGTGACACAGG CTTATAAttcatcataaaaaattattacGGATAAGATACAAGAATTACTT AGTTATTATAAACGTACAACAATTGCTGAATAAAGGGCAACGATAACACT TAAAAAGATTGacaaataaaatttgatagggTACCATTAATTTAGCTTTT TTCCCGAGTTATTTCACGATtactttttttctctatttcaaaATAGTAAA TTATAAATCAAGCTAGAAAGTAAAACTCCAAATATCGATTGTTGAATGCG AGCAGCAGTTGAAGCTAGATCTTCTGCTTTTTTTTCGGATACTTTAACAT TGTTATCACCGACAGGTACCATGTTCATGCAGTTTTCGTTGTTTTCAGAA TACACGAACGATCCGTCGAAAAGCTTCTCACAGAACTGTTTAGCAGACGA GAAATAATCCTTGAACTTCTTGCACGATTTTGGACACATAGTTGGTGTTC CTTTCTTTGACCAGTCCCATCCAGTAGCCCAATTATCATTGCACGTGTAA TCCTCACTACAATCCGAAAACCATGCTTCACAATCGGATTTACAAATCGG AACATTTCGGACTCTTTCTTTCCGGGTTTTCTTGGAAGTCGTATCAGCGA CGATCCATGGTCCAAGGTTTGGAGAACATTCATAGAAACAAGTATCCCGT TTGAAATGTTGCTTGCATTTGTCAGAcatgttttgaattttcggACATTG ATCCCAAACGATGTTGTACAGTGACAGGGCGCCGTCTTTGTCAATATTAT CGGTTGTATTCCAAGTACAGCATGATTTGTTTTGCCAAGGTGTACAGTGA TAATTTTCCATGGCTTTACCTTCTTTTCCTGGTACGTTTTTATGGTTTGT AGATGAGATACATTTGTTCAAATAGTCATCGGCCGTTGAAGAATGGACAA AAACAGCGCACCAAAAAATTACGCCCAAGAATAGTATTAAATTCATCCTT TTCGACAACATCGTGTACATATCATGCATCTAACACAGCTACTATGCCTC ACTTTGTGTTGAGTGTATGTGTAATAAGTTGTGTAACTCTACACCCTTCC TCTTGACTAAAAGTTTGTAAAGTGATCGAAATGAAGTCAAAAA

Coding sequence (CDS) from alignment at sc0000012:910549..911691

>TCONS_00002023 ID=TCONS_00002023|Name=TCONS_00002023|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000012:910549..911691 (Clytia hemisphaerica)
tcaaaATAGTAAATTATAAATCAAGCTAGAAAGTAAAACTCCAAATATCG
ATTGTTGAATGCGAGCAGCAGTTGAAGCTAGATCTTCTGCTTTTTTTTCG
GATACTTTAACATTGTTATCACCGACAGGTACCATGTTCATGCAGTTTTC
GTTGTTTTCAGAATACACGAACGATCCGTCGAAAAGCTTCTCACAGAACT
GTTTAGCAGACGAGAAATAATCCTTGAACTTCTTGCACGATTTTGGACAC
ATAGTTGGTGTTCCTTTCTTTGACCAGTCCCATCCAGTAGCCCAATTATC
ATTGCACGTGTAATCCTCACTACAATCCGAAAACCATGCTTCACAATCGG
ATTTACAAATCGGAACATTTCGGACTCTTTCTTTCCGGGTTTTCTTGGAA
GTCGTATCAGCGACGATCCATGGTCCAAGGTTTGGAGAACATTCATAGAA
ACAAGTATCCCGTTTGAAATGTTGCTTGCATTTGTCAGAcatgttttgaa
ttttcggACATTGATCCCAAACGATGTTGTACAGTGACAGGGCGCCGTCT
TTGTCAATATTATCGGTTGTATTCCAAGTACAGCATGATTTGTTTTGCCA
AGGTGTACAGTGATAATTTTCCATGGCTTTACCTTCTTTTCCTGGTACGT
TTTTATGGTTTGTAGATGAGATACATTTGTTCAAATAGTCATCGGCCGTT
GAAGAATGGACAAAAACAGCGCACCAAAAAATTACGCCCAAGAATAGTAT
TAAATTCATCCTTTTCGACAACATCGTGTACATATCATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001061XLOC_001061Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002023-proteinTCONS_00002023-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002023-exon-sc0000012-1491911889:910549..911691TCONS_00002023-exon-sc0000012-1491911889:910549..911691Clytia hemisphaericaexon
TCONS_00002023-exon-sc0000012-1510915933:910549..911691TCONS_00002023-exon-sc0000012-1510915933:910549..911691Clytia hemisphaericaexon
TCONS_00002023-exon-sc0000012-1575043694:910549..911691TCONS_00002023-exon-sc0000012-1575043694:910549..911691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:910549..911691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.72171 0.703781 0.602116 0.589076 0.358572 0.161913 0.390683 0.960101 9.57069 5.63006 12.5457 20.3899 18.9721 15.0591 22.6043 34.1184 35.7293 24.6675 4.5224 3.63378 102.502 86.0926 18.4663 21.0649 14.7225 8.4442 7.13559 7.55971 94.2278 61.9833
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018143Folate_rcpt-like
Blast
BLAST of TCONS_00002023 vs. Swiss-Prot (Human)
Match: FOLR2 (Folate receptor beta OS=Homo sapiens GN=FOLR2 PE=1 SV=4)

HSP 1 Score: 159.458 bits (402), Expect = 2.218e-45
Identity = 90/245 (36.73%), Postives = 127/245 (51.84%), Query Frame = 1
Query:  133 MLSKRMNLILFLGVIFWCAVFVHSSTADDYLNKCISSTNHKNVPGKEGKAMENYHCTPWQNKSCCTWNTTDNIDKDGALSLYNIVWDQCPKIQNMSDKCKQHFKRDTCFYECSPNLGPWIVADTTSKKTRKERVRNVPICKSDCEAWFSDCSEDYTCNDNWATGWDWSKKGTPTMCPKSCKKFKDYFSSAKQFCEKLFDGSFV---YSENNENCMNM---VPVGDNNVKVSEKKAEDLASTAARI 849
            M+ K M L+L L  +   A    +    D LN C+ + +HK  PG E K  +   C+PW+  +CCT +T+  + KD +  LYN  WD C K   M   CK+HF +DTC YECSPNLGPWI     ++  RKER  +VP+CK DC+ W+ DC   +TC  NW  GWDW+           C+ F+ YF +    CE L+  S+    YS  +  C+ M      G+ N +V+   A  +   A  +
Sbjct:    1 MVWKWMPLLLLLVCV---ATMCSAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQ--CSPWKKNACCTASTSQELHKDTS-RLYNFNWDHCGK---MEPACKRHFIQDTCLYECSPNLGPWI--QQVNQSWRKERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEM 234          
The following BLAST results are available for this feature:
BLAST of TCONS_00002023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOLR22.218e-4536.73Folate receptor beta OS=Homo sapiens GN=FOLR2 PE=1... [more]
back to top