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TCONS_00002006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002006
Unique NameTCONS_00002006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002006 ID=TCONS_00002006|Name=TCONS_00002006|organism=Clytia hemisphaerica|type=transcript|length=1420bp
TTAGAACAGtacaaaatatttaatgaaTTAAATTCGCAACAATCAATGAC
TGTTTTGTCTTTACAAGCAATATTCGGAGACAGAGACAATCAATCAGTTT
ATCATATCAACACTTTGCACTACACTTCAAGTGATTTTGTTACTGCCTAA
TTTAATCCGTTACTTAATATCAATACGGCGTATATCTGAAATTCGCAGCA
GTTAACGACAGTCTTGTCAATCTCAGAGCTTGGATACACAAGACGactgt
tttggttaaaatttatTTGGAAGTCAAAATCAGACACGAATCCCGTGTGT
CTATACTACGGTCTCGTTAACAATCCTGCAACCTATTAGAAAACTTCCGT
TACCTGACATCAATACTTTGCACGCCCTTTGGTGTCTTCAACCCATTTTG
TGTGCTGTCAACTTTACTAAAGTCAAAGCCATGGCCGATTGTTTCACCGA
AGAGTAAACACACATCAGTAAACATCGACGTCTTGTGTTGGAGTACAACC
GGTCCTTTATCTGCTGACGACGTTCTTGCATTCAAACCacggattttctt
ttcaataaaaaagagTAGCACGAAACACACATTGTTCAATTCTTGAATAT
TCCCAGTATATTTGTCATCACAGTCATCAATCCAAGAGCTTCACGAAACG
AAAGAATCtgaaaaaataaacatgctTCGGAACGTTGTTACAATAATTCT
GGTCATCTTCTGGCTTCATGGTGCGGTAGATTCAATTTCTAATGGGGATA
TTCTTAACGAAATTGACCTTTGTGACGCAAGCTATTGTCACTACAATGGA
ACTTGTATTAAAATGAACCCTGGTGATTTCAATGGACATTTTTCTGCTGA
ATCTTTGAATTATCGTTGTGTATGTTTTGCTGGCTATGTATCATCGAGAT
GTGAGAGTATGGTCGAGGAAGTGATACactttaatacaccttttcgaccg
tagccaccaattgcctcGCGGGCGTTTTTtatccgttttaccaccctaaa
taCGTTCCAGTCTTTTTTTCACGCCTaatgacaatagaaaaaagtgtaaa
aaaggattggatcgagtttagggtggtaaattaaagtagcacgcgcctga
ccgtgcgactacggtcgaaaaggtgcatTGAAATTGCAAGAATATTTTGT
CTAAAGTAAGCCTCTTGGCTATTAAAGAGACAAGCAAGTGTATAATGAAA
TGAAACTAAAGTTTTGTGTGTGCTTTCTTCCATTACTACCTTGTAGAAAC
CATGACAGTGTACTTAGACCAATTCTCTTGAGAGAGGTTTTCACATGGTA
GCAAAACAGAAAGAGGACTTTAATCATCTAAAACATACCTTTCTTTTAAT
CGCCATCTTGATGAGAAGATcaaaaaggccaataaaggtATTGGCCTTAT
TAATAGACTTTGCAATCATG
Run BLAST on NCBI

transcript from alignment at sc0000012:504529..505948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002006 ID=TCONS_00002006|Name=TCONS_00002006|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at sc0000012:504529..505948 (Clytia hemisphaerica)
CATGATTGCAAAGTCTATTAATAAGGCCAATacctttattggcctttttg ATCTTCTCATCAAGATGGCGATTAAAAGAAAGGTATGTTTTAGATGATTA AAGTCCTCTTTCTGTTTTGCTACCATGTGAAAACCTCTCTCAAGAGAATT GGTCTAAGTACACTGTCATGGTTTCTACAAGGTAGTAATGGAAGAAAGCA CACACAAAACTTTAGTTTCATTTCATTATACACTTGCTTGTCTCTTTAAT AGCCAAGAGGCTTACTTTAGACAAAATATTCTTGCAATTTCAatgcacct tttcgaccgtagtcgcacggtcaggcgcgtgctactttaatttaccaccc taaactcgatccaatccttttttacacttttttctattgtcattAGGCGT GAAAAAAAGACTGGAACGtatttagggtggtaaaacggataAAAAACGCC CGCgaggcaattggtggctacggtcgaaaaggtgtattaaagtGTATCAC TTCCTCGACCATACTCTCACATCTCGATGATACATAGCCAGCAAAACATA CACAACGATAATTCAAAGATTCAGCAGAAAAATGTCCATTGAAATCACCA GGGTTCATTTTAATACAAGTTCCATTGTAGTGACAATAGCTTGCGTCACA AAGGTCAATTTCGTTAAGAATATCCCCATTAGAAATTGAATCTACCGCAC CATGAAGCCAGAAGATGACCAGAATTATTGTAACAACGTTCCGAagcatg tttattttttcaGATTCTTTCGTTTCGTGAAGCTCTTGGATTGATGACTG TGATGACAAATATACTGGGAATATTCAAGAATTGAACAATGTGTGTTTCG TGCTActcttttttattgaaaagaaaatccgtGGTTTGAATGCAAGAACG TCGTCAGCAGATAAAGGACCGGTTGTACTCCAACACAAGACGTCGATGTT TACTGATGTGTGTTTACTCTTCGGTGAAACAATCGGCCATGGCTTTGACT TTAGTAAAGTTGACAGCACACAAAATGGGTTGAAGACACCAAAGGGCGTG CAAAGTATTGATGTCAGGTAACGGAAGTTTTCTAATAGGTTGCAGGATTG TTAACGAGACCGTAGTATAGACACACGGGATTCGTGTCTGATTTTGACTT CCAAataaattttaaccaaaacagtCGTCTTGTGTATCCAAGCTCTGAGA TTGACAAGACTGTCGTTAACTGCTGCGAATTTCAGATATACGCCGTATTG ATATTAAGTAACGGATTAAATTAGGCAGTAACAAAATCACTTGAAGTGTA GTGCAAAGTGTTGATATGATAAACTGATTGATTGTCTCTGTCTCCGAATA TTGCTTGTAAAGACAAAACAGTCATTGATTGTTGCGAATTTAAttcatta aatattttgtaCTGTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001044XLOC_001044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002006-exon-sc0000012-1491911889:504529..505948TCONS_00002006-exon-sc0000012-1491911889:504529..505948Clytia hemisphaericaexon
TCONS_00002006-exon-sc0000012-1510915933:504529..505948TCONS_00002006-exon-sc0000012-1510915933:504529..505948Clytia hemisphaericaexon
TCONS_00002006-exon-sc0000012-1575043694:504529..505948TCONS_00002006-exon-sc0000012-1575043694:504529..505948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:504529..505948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159253 0.264307 0.156927 0.0763653 0.496033 0.319563 0.539111 0.546107 1.58763 1.31112 0.594826 1.34461 0.176097 0.205566 0.101859 0.0564087 2.74943 3.50848 0.137879 0.425897 5.4468 4.11767 1.0869 1.58951 1.31622 1.76014 0.216278 0.345365 0.0350553 0.0331976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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