TCONS_00001995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001995
Unique NameTCONS_00001995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001995 ID=TCONS_00001995|Name=TCONS_00001995|organism=Clytia hemisphaerica|type=transcript|length=1000bp
AAAAGAGTCAGTGCAGTATCTCAAGCAAGAGTATAATATTAGCTACATGG
CGGttatttatttcaaagaaaGTGACAAAGATAATGAGTTGGTtcgaaaa
ccttgtaaaaaTCGCCCTGAAACTGCCTTTTGCTTTTACGTTGATGCTGA
CAAGAACAATCAGAATGATTGTATCAAAGAATTGTTTTTGGATATCAATG
ATAAGGATGCCGTTAGTAAAGCAATGAATTTCATGGTGAAAGACCCTCAT
TTAAGAGTACTTATGGCGTATGGATTTGGATCAACTATCTTTAGATTTGA
ACACCAAGCAGGTAGTAGAGAGTACACTAATGTGAACGGAGGTGACTTCT
ATATTTCCTATTTTGAAAGGAAATTGACAGATATAGCCTCTCTAGATGAA
AATGGCAAGACCAGATGGGGAAGATCAATTATCAACATCCCAGGAGAGCA
TGCTATCAACGAATTTTTGGGTTATGTTTATGAGCTGACAAAGAAATTGG
TCAACAACAAATGGGTCTTTTCGGCCTTAGAAAACACTGGTGTTATTGCT
GACTTAGCTCAGAAAcatgaaaatgttttgaagCTTTTGTTAAAAGACTG
GAAGACTGGTGATCAATTGTCATTCGATGATTGGAAACAAATACCTGAAG
CTTTTCGAAAACAAATAGCTGTTGAGATCAGTCAAAATCGAATATTAATC
AAGAAGTTTATACAATATTGGAAACAATCGACCTATCTTAACATTGTAAC
CCCAGAGGACCTATTAGCAATGAGGGTTTACAGTCCAAAGAAAGCACTTG
AAGCCAAACCATACTgtaatatgacaatacctagaTGTAGCAAAGGATTT
GAATTAAAACATTCACTTTATAAAGAAGAATTTTGGAACAATAGTTATGG
TTGGCATTGTGCTAAATGTCCTCCAATGACTTACAAAAATACCAAGGGCA
ATTCCGAATGTCAGCCATGTATAGTTCCTTTGCAAACAGATGAAGCTCGG
Run BLAST on NCBI

protein sequence of TCONS_00001995-protein

>TCONS_00001995-protein ID=TCONS_00001995-protein|Name=TCONS_00001995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
KESVQYLKQEYNISYMAVIYFKESDKDNELVRKPCKNRPETAFCFYVDAD
KNNQNDCIKELFLDINDKDAVSKAMNFMVKDPHLRVLMAYGFGSTIFRFE
HQAGSREYTNVNGGDFYISYFERKLTDIASLDENGKTRWGRSIINIPGEH
AINEFLGYVYELTKKLVNNKWVFSALENTGVIADLAQKHENVLKLLLKDW
KTGDQLSFDDWKQIPEAFRKQIAVEISQNRILIKKFIQYWKQSTYLNIVT
PEDLLAMRVYSPKKALEAKPYCNMTIPRCSKGFELKHSLYKEEFWNNSYG
WHCAKCPPMTYKNTKGNSECQPCIVPLQTDEAR
Run BLAST on NCBI

transcript from alignment at sc0000012:380879..381878

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001995 ID=TCONS_00001995|Name=TCONS_00001995|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at sc0000012:380879..381878 (Clytia hemisphaerica)
CCGAGCTTCATCTGTTTGCAAAGGAACTATACATGGCTGACATTCGGAAT TGCCCTTGGTATTTTTGTAAGTCATTGGAGGACATTTAGCACAATGCCAA CCATAACTATTGTTCCAAAATTCTTCTTTATAAAGTGAATGTTTTAATTC AAATCCTTTGCTACAtctaggtattgtcatattacAGTATGGTTTGGCTT CAAGTGCTTTCTTTGGACTGTAAACCCTCATTGCTAATAGGTCCTCTGGG GTTACAATGTTAAGATAGGTCGATTGTTTCCAATATTGTATAAACTTCTT GATTAATATTCGATTTTGACTGATCTCAACAGCTATTTGTTTTCGAAAAG CTTCAGGTATTTGTTTCCAATCATCGAATGACAATTGATCACCAGTCTTC CAGTCTTTTAACAAAAGcttcaaaacattttcatgTTTCTGAGCTAAGTC AGCAATAACACCAGTGTTTTCTAAGGCCGAAAAGACCCATTTGTTGTTGA CCAATTTCTTTGTCAGCTCATAAACATAACCCAAAAATTCGTTGATAGCA TGCTCTCCTGGGATGTTGATAATTGATCTTCCCCATCTGGTCTTGCCATT TTCATCTAGAGAGGCTATATCTGTCAATTTCCTTTCAAAATAGGAAATAT AGAAGTCACCTCCGTTCACATTAGTGTACTCTCTACTACCTGCTTGGTGT TCAAATCTAAAGATAGTTGATCCAAATCCATACGCCATAAGTACTCTTAA ATGAGGGTCTTTCACCATGAAATTCATTGCTTTACTAACGGCATCCTTAT CATTGATATCCAAAAACAATTCTTTGATACAATCATTCTGATTGTTCTTG TCAGCATCAACGTAAAAGCAAAAGGCAGTTTCAGGGCGAtttttacaagg ttttcgaACCAACTCATTATCTTTGTCACtttctttgaaataaataaCCG CCATGTAGCTAATATTATACTCTTGCTTGAGATACTGCACTGACTCTTTT

Coding sequence (CDS) from alignment at sc0000012:380879..381878

>TCONS_00001995 ID=TCONS_00001995|Name=TCONS_00001995|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0000012:380879..381878 (Clytia hemisphaerica)
CCGAGCTTCATCTGTTTGCAAAGGAACTATACATGGCTGACATTCGGAAT
TGCCCTTGGTATTTTTGTAAGTCATTGGAGGACATTTAGCACAATGCCAA
CCATAACTATTGTTCCAAAATTCTTCTTTATAAAGTGAATGTTTTAATTC
AAATCCTTTGCTACAtctaggtattgtcatattacAGTATGGTTTGGCTT
CAAGTGCTTTCTTTGGACTGTAAACCCTCATTGCTAATAGGTCCTCTGGG
GTTACAATGTTAAGATAGGTCGATTGTTTCCAATATTGTATAAACTTCTT
GATTAATATTCGATTTTGACTGATCTCAACAGCTATTTGTTTTCGAAAAG
CTTCAGGTATTTGTTTCCAATCATCGAATGACAATTGATCACCAGTCTTC
CAGTCTTTTAACAAAAGcttcaaaacattttcatgTTTCTGAGCTAAGTC
AGCAATAACACCAGTGTTTTCTAAGGCCGAAAAGACCCATTTGTTGTTGA
CCAATTTCTTTGTCAGCTCATAAACATAACCCAAAAATTCGTTGATAGCA
TGCTCTCCTGGGATGTTGATAATTGATCTTCCCCATCTGGTCTTGCCATT
TTCATCTAGAGAGGCTATATCTGTCAATTTCCTTTCAAAATAGGAAATAT
AGAAGTCACCTCCGTTCACATTAGTGTACTCTCTACTACCTGCTTGGTGT
TCAAATCTAAAGATAGTTGATCCAAATCCATACGCCATAAGTACTCTTAA
ATGAGGGTCTTTCACCATGAAATTCATTGCTTTACTAACGGCATCCTTAT
CATTGATATCCAAAAACAATTCTTTGATACAATCATTCTGATTGTTCTTG
TCAGCATCAACGTAAAAGCAAAAGGCAGTTTCAGGGCGAtttttacaagg
ttttcgaACCAACTCATTATCTTTGTCACtttctttgaaataaataaCCG
CCATGTAGCTAATATTATACTCTTGCTTGAGATACTGCACTGACTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001033XLOC_001033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001995-exon-sc0000012-1491911889:380879..381878TCONS_00001995-exon-sc0000012-1491911889:380879..381878Clytia hemisphaericaexon
TCONS_00001995-exon-sc0000012-1510915933:380879..381878TCONS_00001995-exon-sc0000012-1510915933:380879..381878Clytia hemisphaericaexon
TCONS_00001995-exon-sc0000012-1575043694:380879..381878TCONS_00001995-exon-sc0000012-1575043694:380879..381878Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001995-proteinTCONS_00001995-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:380879..381878 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0604851 0 0.230656 0.431875 0.0755914 0.187264 0 0 0.417613 0.774456 0.101873 0.0546628 0.370371 0.241575 0.810533 1.74622 0.520383 0.317281 0.257131 0.233769 0.288932 0.300842 0 0 0.049782 0.20288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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