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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001985 ID=TCONS_00001985|Name=TCONS_00001985|organism=Clytia hemisphaerica|type=transcript|length=1743bp
GTGCTTGTATACTAAGGCTAAGCCTTATAGGTGACACTAACAATAATATT
TATAATTCAAGGATAACCCTGATGTCtgaaaagttaaatttttcagtcAT
TACGTACCAACATTAACGAAAGGAATTCCATCGTAAGGGATATATTGTGA
TTTCCACATCAAACGAACTGTTTCAGCACTTTCATCTTTTGCTGCTGACG
GAGTCTGCCTAATTGCAAATAAACTTtgtgtttcttttttataaaggtTC
AAGATATCATCCATTTCACTTTCTGTAAAAACATAACCAGTGTATGTATC
TCCACATAAAGTACAATCCCTTAGCTGAAGTGCCCAATTTGGTATTGTAT
TTAGAAGATCTGAGTTTGTATTTAAAACATAATGTCCTTCAGTTGCCTTC
ATGTCGCCTGCATTATCAAGGGTATTTGGTGCAACAAAAGAAGCAAGATT
TATTATAGTATTCCCATCTTTTTTAACCAAGTTATTTTTGTTGAGAGTAG
CTATAATATCGTTAACGTTTATGTTTACAGGTACACCCTCTGTGTTCATC
ACTTGTACTATAGCAGCTTCTGGAGCAGAAGTCGAGGTTGACGATGATTC
ATTCTGAAGGCTCATGTTTTTTATATTGTCTGTACTATTTGGTGGTGGAG
CATTTTGATCAAGATTAACAATGTTTAGCATTTGAGGAGCTGACGTGTTT
GGTTGTTGCTGTATTGGAAATTGTTGCTGATCAATCGGTTGCAAGACCGT
TTGAGTTTCAGACTGGGAAACTAACAAATAAATAGTACCATTATTTGGTT
GCTGTTGTACATTATTTTCATTAGCAGCATTAATATTGTTATTGATGATT
TCGATGTTATTCAAAATACCAGGGTTTGTTGAGTAATCAACCAGCGAGTT
TGCATCTATCGTGACAATATTCTGTTGTAAATATTTCTGATCACTAACCT
CTCCAACCATGGTAGGTCCCATGGATAAGGTGTTTGCttcaatttcattg
aaaacattatCTCCAGTGACAGCATTTTCATTTCCATCTTTCTTGGCTAA
ATCTGGAGTAACATAACAAACATCAGATGTGTTCTCACAAGTTACCTCCG
TGTGAAGTGCTGTTGTAAAACTTTCATTGTCTTTAACATTACCAGGAACT
CCTAAAGACATCGATATCAAAATCTGCAGTGATTCATAAAATTTTCTTGT
CTTGGTTTTGAAGTTTTCCCaccaaattttttgttttggtagCCTCGTTT
GTCTTCAATCACAACCTCATAATCAAAAACTCGGAGCGAAAAGGGAGGCT
GTTTTGCATGACATCGAGGATAAAGATtcgattttctaaaaatatttgta
gTGCGCATGCGCAGTAAATCTCGGCCATTTTCAAGATTACGGGAAGACCA
ATCAAATTCATTAGAAAGTGTGAATGACACGCGCCGACAGACGTTGGGGG
ATAATAGGGGTAATTAAACCCAATTAATTCGGATAGATGAAAAGAAAGGA
AATACGGGACCTTCTAAATAGTCTAAGCAACTTTTGAGAGAAGGGGAGCT
CATATACACAAATACAAGAGGTGAAGCAGATGTTGGGGGAcatatttctt
gtttttatttcgtCTAAACACACCCTGTTTATGCTATAATCATATGCTAC
ACCACGCCTTTTGGTTTTGCATTCGTTCAATCTAATTACAATTAGTGAGC
CACCCAAGCTGCTCAACGTATATAAATTCAGAGTGCGCTAAAA Run BLAST on NCBI protein sequence of TCONS_00001985-protein >TCONS_00001985-protein ID=TCONS_00001985-protein|Name=TCONS_00001985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MSLGVPGNVKDNESFTTALHTEVTCENTSDVCYVTPDLAKKDGNENAVTG
DNVFNEIEANTLSMGPTMVGEVSDQKYLQQNIVTIDANSLVDYSTNPGIL
NNIEIINNNINAANENNVQQQPNNGTIYLLVSQSETQTVLQPIDQQQFPI
QQQPNTSAPQMLNIVNLDQNAPPPNSTDNIKNMSLQNESSSTSTSAPEAA
IVQVMNTEGVPVNINVNDIIATLNKNNLVKKDGNTIINLASFVAPNTLDN
AGDMKATEGHYVLNTNSDLLNTIPNWALQLRDCTLCGDTYTGYVFTESEM
DDILNLYKKETQSLFAIRQTPSAAKDESAETVRLMWKSQYIPYDGIPFVN
VGT Run BLAST on NCBI transcript from alignment at sc0000012:150316..152058 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001985 ID=TCONS_00001985|Name=TCONS_00001985|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at sc0000012:150316..152058 (Clytia hemisphaerica)
TTTTAGCGCACTCTGAATTTATATACGTTGAGCAGCTTGGGTGGCTCACT
AATTGTAATTAGATTGAACGAATGCAAAACCAAAAGGCGTGGTGTAGCAT
ATGATTATAGCATAAACAGGGTGTGTTTAGacgaaataaaaacaagaaat
atgTCCCCCAACATCTGCTTCACCTCTTGTATTTGTGTATATGAGCTCCC
CTTCTCTCAAAAGTTGCTTAGACTATTTAGAAGGTCCCGTATTTCCTTTC
TTTTCATCTATCCGAATTAATTGGGTTTAATTACCCCTATTATCCCCCAA
CGTCTGTCGGCGCGTGTCATTCACACTTTCTAATGAATTTGATTGGTCTT
CCCGTAATCTTGAAAATGGCCGAGATTTACTGCGCATGCGCActacaaat
atttttagaaaatcgaATCTTTATCCTCGATGTCATGCAAAACAGCCTCC
CTTTTCGCTCCGAGTTTTTGATTATGAGGTTGTGATTGAAGACAAACGAG
GctaccaaaacaaaaaatttggtGGGAAAACTTCAAAACCAAGACAAGAA
AATTTTATGAATCACTGCAGATTTTGATATCGATGTCTTTAGGAGTTCCT
GGTAATGTTAAAGACAATGAAAGTTTTACAACAGCACTTCACACGGAGGT
AACTTGTGAGAACACATCTGATGTTTGTTATGTTACTCCAGATTTAGCCA
AGAAAGATGGAAATGAAAATGCTGTCACTGGAGataatgttttcaatgaa
attgaaGCAAACACCTTATCCATGGGACCTACCATGGTTGGAGAGGTTAG
TGATCAGAAATATTTACAACAGAATATTGTCACGATAGATGCAAACTCGC
TGGTTGATTACTCAACAAACCCTGGTATTTTGAATAACATCGAAATCATC
AATAACAATATTAATGCTGCTAATGAAAATAATGTACAACAGCAACCAAA
TAATGGTACTATTTATTTGTTAGTTTCCCAGTCTGAAACTCAAACGGTCT
TGCAACCGATTGATCAGCAACAATTTCCAATACAGCAACAACCAAACACG
TCAGCTCCTCAAATGCTAAACATTGTTAATCTTGATCAAAATGCTCCACC
ACCAAATAGTACAGACAATATAAAAAACATGAGCCTTCAGAATGAATCAT
CGTCAACCTCGACTTCTGCTCCAGAAGCTGCTATAGTACAAGTGATGAAC
ACAGAGGGTGTACCTGTAAACATAAACGTTAACGATATTATAGCTACTCT
CAACAAAAATAACTTGGTTAAAAAAGATGGGAATACTATAATAAATCTTG
CTTCTTTTGTTGCACCAAATACCCTTGATAATGCAGGCGACATGAAGGCA
ACTGAAGGACATTATGTTTTAAATACAAACTCAGATCTTCTAAATACAAT
ACCAAATTGGGCACTTCAGCTAAGGGATTGTACTTTATGTGGAGATACAT
ACACTGGTTATGTTTTTACAGAAAGTGAAATGGATGATATCTTGAacctt
tataaaaaagaaacacaAAGTTTATTTGCAATTAGGCAGACTCCGTCAGC
AGCAAAAGATGAAAGTGCTGAAACAGTTCGTTTGATGTGGAAATCACAAT
ATATCCCTTACGATGGAATTCCTTTCGTTAATGTTGGTACGTAATgactg
aaaaatttaacttttcaGACATCAGGGTTATCCTTGAATTATAAATATTA
TTGTTAGTGTCACCTATAAGGCTTAGCCTTAGTATACAAGCAC Coding sequence (CDS) from alignment at sc0000012:150316..152058 >TCONS_00001985 ID=TCONS_00001985|Name=TCONS_00001985|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000012:150316..152058 (Clytia hemisphaerica)
ATGTCTTTAGGAGTTCCTGGTAATGTTAAAGACAATGAAAGTTTTACAAC
AGCACTTCACACGGAGGTAACTTGTGAGAACACATCTGATGTTTGTTATG
TTACTCCAGATTTAGCCAAGAAAGATGGAAATGAAAATGCTGTCACTGGA
GataatgttttcaatgaaattgaaGCAAACACCTTATCCATGGGACCTAC
CATGGTTGGAGAGGTTAGTGATCAGAAATATTTACAACAGAATATTGTCA
CGATAGATGCAAACTCGCTGGTTGATTACTCAACAAACCCTGGTATTTTG
AATAACATCGAAATCATCAATAACAATATTAATGCTGCTAATGAAAATAA
TGTACAACAGCAACCAAATAATGGTACTATTTATTTGTTAGTTTCCCAGT
CTGAAACTCAAACGGTCTTGCAACCGATTGATCAGCAACAATTTCCAATA
CAGCAACAACCAAACACGTCAGCTCCTCAAATGCTAAACATTGTTAATCT
TGATCAAAATGCTCCACCACCAAATAGTACAGACAATATAAAAAACATGA
GCCTTCAGAATGAATCATCGTCAACCTCGACTTCTGCTCCAGAAGCTGCT
ATAGTACAAGTGATGAACACAGAGGGTGTACCTGTAAACATAAACGTTAA
CGATATTATAGCTACTCTCAACAAAAATAACTTGGTTAAAAAAGATGGGA
ATACTATAATAAATCTTGCTTCTTTTGTTGCACCAAATACCCTTGATAAT
GCAGGCGACATGAAGGCAACTGAAGGACATTATGTTTTAAATACAAACTC
AGATCTTCTAAATACAATACCAAATTGGGCACTTCAGCTAAGGGATTGTA
CTTTATGTGGAGATACATACACTGGTTATGTTTTTACAGAAAGTGAAATG
GATGATATCTTGAacctttataaaaaagaaacacaAAGTTTATTTGCAAT
TAGGCAGACTCCGTCAGCAGCAAAAGATGAAAGTGCTGAAACAGTTCGTT
TGATGTGGAAATCACAATATATCCCTTACGATGGAATTCCTTTCGTTAAT
GTTGGTACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001985-exon-sc0000012-1491911889:150316..152058 | TCONS_00001985-exon-sc0000012-1491911889:150316..152058 | Clytia hemisphaerica | exon |
| TCONS_00001985-exon-sc0000012-1510915933:150316..152058 | TCONS_00001985-exon-sc0000012-1510915933:150316..152058 | Clytia hemisphaerica | exon |
| TCONS_00001985-exon-sc0000012-1575043694:150316..152058 | TCONS_00001985-exon-sc0000012-1575043694:150316..152058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:150316..152058 . |
Blast
BLAST of TCONS_00001985 vs. Swiss-Prot (Human)
Match: CARTF (Calcium-responsive transcription factor OS=Homo sapiens GN=CARF PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 5.864e-24 Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = -1
Query: 103 PEAAIVQVMNTEGVPVNINVNDIIATLNKNNLVKKDGNTIIN-LASFVAPNTLDNAGDMKATEGHY---VLNTNSDLLNTIPNWALQLRDCTLCGDTYTGYVFTESEMDDILNLYKKETQSLFAIRQTPSAAKDESAETVRLMWKSQYIPYDGIPFVNVGT 573
P+ +V V + VP N + T+ + L N I++ SF P K+ G +L L + P WA +LR C GD+Y GY +E+E++ +L +K++TQS++ RQ+PS AK RLMWKSQY+PYDGIPFVN G+
Sbjct: 131 PQGQLVDVNSPRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLPK--------KSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKP----ATRLMWKSQYVPYDGIPFVNAGS 279
The following BLAST results are available for this feature:
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