TCONS_00001978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001978
Unique NameTCONS_00001978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001978 ID=TCONS_00001978|Name=TCONS_00001978|organism=Clytia hemisphaerica|type=transcript|length=795bp
CCAGGCTACGCAATTAGCCGCATTCCGAATGAAATTATCCAGGCTATTTT
GCTTTTCAACGTGGTTGGATTGCTGATAAACTTCCCTTCAAATTCAACAA
ACACTGTTTATCGAGAGGATGCTTGTATACGATTCTTGATCATCAATAAA
GTGTTTGGTTTGGAAAGTGATAAAAACTGACTTCATTCCATTTCTTTTAA
AAGTTTCCATATCTGTTCGATCAACCCTAAAGACACTGGCAACAGAAGAT
CTTACTTAACTGGTACCCAGTTTTAAGtttCCTGATCCGTCCAATCAATC
CTAAAGACGCAGGCAACAGAAAATCATAACTGGTACCCAGTTTTAAGGTA
TCATTACACCCCATCCGGTGGAGTGCAACAATACTTTAAATCAGCAAATT
GTCTATTCAGCTCGCACGTAATTGCACAGAAATTCGGTTAAACTTGTATT
TACTCAGTCTACACGGACTTACTCGGCAAATTCGGTTAAACTTGTATCTA
CTTAGCTTACACGGATTTACTCGACAAACTCGGCTAAACTTGCATCTACT
CGGATTTACTCGGATTTACTCAGCCAACATAGCTTACTCGTCTTATATTG
AAATTATACACAAGTAACTTGAATTTTCGCTAGTTCGTTATTACTCGGTC
TACTTCAGTTTGCTCggttaaaagaaataaatacattAATATCGTTAATT
AACTCTCATTTCTTGCACCAGCTCGCTCCTAAATTTTGTGAAGCATGATA
TCAATCGAAGCGTATCGTATTTCTATTGGAAACTTTAACGGGACA
Run BLAST on NCBI

transcript from alignment at sc0000012:1120854..1123886-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001978 ID=TCONS_00001978|Name=TCONS_00001978|organism=Clytia hemisphaerica|type=transcript|length=3033bp|location=Sequence derived from alignment at sc0000012:1120854..1123886- (Clytia hemisphaerica)
CCAGGCTACGCAATTAGCCGCATTCCGAATGAAATTATCCAGGCTATTTT
GCTTTTCAACGTGGTTGGATTGCTGATAAACTTCCCTTCAAATTCAACAA
ACACTGTTTATCGAGAGGATGCTTGTATACGATTCTTGATCATCAATAAA
GTGTTTGGTTTGGAAAGTGATAAAAACTGACTTCATTCCATTTCTTTTAA
AAGGTATGGATTTAACACTGCATTTGACAATTATCTGATTAATTTTGAGG
TATCTAAGATCTTGTAACGGTGGGTAGACTGCTCCAGTTCTAACACTGCA
TTTTTGCCCTGCATTTGACAATTAATTTCAATTAGCAACTTCTACCGTGA
GATTGGGTAACTTGCATCAGTGGAGGCTAACTTGCATAGCCCTCAAATGA
ATGACCTGGCTGGTCATTAAAATACAAAGTTAAATCAAAACAAAAATGGT
AGAGTAGAGCTGCGAGAGCAGAGCTGCGTAGTTGTATTTTAATGACCAGC
CAGGTCATTCATTTGAGTGCTATGCATGTTAGCCTTCACTGATGCAAGTT
ACCCAATTTCACGGTACCCCTGAGGTCTCTTGTAATGGTGGGTGGACTGT
TCCAGTTCTAGTCTGTTACTCCCCCTGTGGACGACATTGATTTTTTCTTA
AAAAAAAGTGAAAAAAACTTGAATGTAAGAGCGGTCCAATCGAATACAAT
TGAATCAATCGAACGCAATTGAACATAATTGAATGCAAGTTACCCAATTT
CACGGTACCCCTGAGGTCTCTTGTAATGGTGGGTGGACTGTTCCAGTTCT
AGTCTGTTACTCCCCCTGTGGACGACATCGATTTTTTCTTAAAAAAAAGT
GAAAAAAACTTGAATGTAAGAGCGGTCCAATCGAATACAATTGAATCAAT
CGAACGCAATTGAACATAATTGAATGCAAGTTACCCAATTTCACGGTACC
CCTGAGGTCTCTTGTAATGGTGGGTGGACTGTTCCAGTTCTAGTCTGTTA
CTCCCCCTGTGGACGACATCGATTTTTTCTTAAAAAAAAGTGAAAAAAAC
TTGAATGTAAGAGCGGTCCAATCGAATACAATTGAATCAATCGAACGCAA
TTGAACATAATTGAATACAATTGAATCAATCGAAGCAATCGAAGCAATCA
AACGGCAATTCCTGGGTAATATTTGATTGCGATTTGATTGCGTTCAACAA
TAGAATCGTAATTATTCGATTGCGTTCAATTGCGTTTTAATTTATTATTC
AATTTATTTATTCAATTTATTATTATTCAGGGGTCTGGTTACTAACGTCA
ATTTTCATCTGGTTACTAACATCAATTTTCATTCACAACGTGAAGGCTTC
TTTACCGTTTCCCTGCACATCTTCTTTGACGCAGGGGTTTTATTGTTGCA
TTGCGTAAAAGTTTCCTACCGTGGTGTTTGAATTATAGGAAAAATAGAGA
AAGAAATAAACTAGAAAATGTCACTAACTTTTTAGTATTTATGATAAGGT
AGCAGATTTCTGATCTGGGGCATAATCTATGAAAAAATGTCTACCTTGGA
GAGGGTTTATTTTTAAGCAGATAACAATAATAATTTTTTTGTTTCTTTAC
AGTTTCCATATCTGTTCGATCAACCCTAAAGACACTGGCAACAGAAGATC
TTACTTAACTGGTACCCAGTTTTAAGGTACATTTTATCATTTATTAGGGT
TCAGAAAAAAAGTTAACACGTCCTACATCAATATGCCAAAAACATTTTGT
TCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACGGCACGTTT
GTTAAATTTTCTAAAATTTTCCATCCACAACGGTCCTTATTAGGATCACC
ACGTTTATTGATTTTTGAAAATATTTTCAGCTGTCAAAAGGAAAGTCCCT
TATTTTGATCCAAATAGCCTGATTTTACCCTGTATTTACTCTATTTTGGA
ATTTTTCAGAAGTACAATTTCTCAGGCCCGGGAAGTTTTGAAAAAGTCGG
GAAGTTTTGAAAAAGTTCAACCCCCAAGTTTATTTTGTTAAACACCTGAG
AATACGCATAAAAGTTTTCACAAATAAGTTAGCAGATTTCTGATTGGCGT
AATCTGTGAAAAATGTCTTCCCTGGGGAGGGTTTATTTTCAGACATAATA
ATTTTTTTCGTTTTTTTTTTACAGTTTCCTGATCCGTCCAATCAATCCTA
AAGACGCAGGCAACAGAAAATCATAACTGGTACCCAGTTTTAAGGTACAT
TTAAATTTATCTATTGTATTGAGATTCAGAAAAAAGGTTAACAGTATTAG
ACCCCATTAGGTTTCCACAAATTCTCGATTTTGTCATGATTAGTTAGTCA
TAGTGCAGACCCCCTTAAAAAATAAAGACTCAAAAAGGCAAAAGAATATG
GTCTGAAAGAAAAGCCTTCTTCATAGATAAAAGGAAAGGCAATAAATAGT
AAAGGCGTTGAATCTTTATGTTGAATCTTGGCAGTGTTAAAGTTTACCAA
TTTTATTTTTACCTACTCCCTTTTTTGATTAAATATCTTAAGATTTTCAA
CATATAATATATAGATTTCTTTCTTTCTATTTTAGGTATCATTACACCCC
ATCCGGTGGAGTGCAACAATACTTTAAATCAGCAAATTGTCTATTCAGCT
CGCACGTAATTGCACAGAAATTCGGTTAAACTTGTATTTACTCAGTCTAC
ACGGACTTACTCGGCAAATTCGGTTAAACTTGTATCTACTTAGCTTACAC
GGATTTACTCGACAAACTCGGCTAAACTTGCATCTACTCGGATTTACTCG
GATTTACTCAGCCAACATAGCTTACTCGTCTTATATTGAAATTATACACA
AGTAACTTGAATTTTCGCTAGTTCGTTATTACTCGGTCTACTTCAGTTTG
CTCGGTTAAAAGAAATAAATACATTAATATCGTTAATTAACTCTCATTTC
TTGCACCAGCTCGCTCCTAAATTTTGTGAAGCATGATATCAATCGAAGCG
TATCGTATTTCTATTGGAAACTTTAACGGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001019XLOC_001019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001978-exon-sc0000012-1575043694:1123684..1123886TCONS_00001978-exon-sc0000012-1575043694:1123684..1123886Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1575043694:1122211..1122284TCONS_00001978-exon-sc0000012-1575043694:1122211..1122284Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1575043694:1121643..1121712TCONS_00001978-exon-sc0000012-1575043694:1121643..1121712Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1575043694:1120854..1121301TCONS_00001978-exon-sc0000012-1575043694:1120854..1121301Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1510915933:1123684..1123886TCONS_00001978-exon-sc0000012-1510915933:1123684..1123886Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1510915933:1122211..1122284TCONS_00001978-exon-sc0000012-1510915933:1122211..1122284Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1510915933:1121643..1121712TCONS_00001978-exon-sc0000012-1510915933:1121643..1121712Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1510915933:1120854..1121301TCONS_00001978-exon-sc0000012-1510915933:1120854..1121301Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1491911889:1123684..1123886TCONS_00001978-exon-sc0000012-1491911889:1123684..1123886Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1491911889:1122211..1122284TCONS_00001978-exon-sc0000012-1491911889:1122211..1122284Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1491911889:1121643..1121712TCONS_00001978-exon-sc0000012-1491911889:1121643..1121712Clytia hemisphaericaexon
TCONS_00001978-exon-sc0000012-1491911889:1120854..1121301TCONS_00001978-exon-sc0000012-1491911889:1120854..1121301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1120854..1123886 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.968676	1.77115	1.52559	0.402387	18.5333	13.0715	13.5436	14.3991	7.32695	9.51979	4.47942	9.77395	4.79669	4.39061	4.15972	7.48602	8.31713	5.33985	4.76247	6.69144	9.71692	11.906	4.44266	4.67012	1.30003	1.85639	4.8388	4.07543	3.09107	2.39621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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