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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001978 ID=TCONS_00001978|Name=TCONS_00001978|organism=Clytia hemisphaerica|type=transcript|length=795bp CCAGGCTACGCAATTAGCCGCATTCCGAATGAAATTATCCAGGCTATTTT GCTTTTCAACGTGGTTGGATTGCTGATAAACTTCCCTTCAAATTCAACAA ACACTGTTTATCGAGAGGATGCTTGTATACGATTCTTGATCATCAATAAA GTGTTTGGTTTGGAAAGTGATAAAAACTGACTTCATTCCATTTCTTTTAA AAGTTTCCATATCTGTTCGATCAACCCTAAAGACACTGGCAACAGAAGAT CTTACTTAACTGGTACCCAGTTTTAAGtttCCTGATCCGTCCAATCAATC CTAAAGACGCAGGCAACAGAAAATCATAACTGGTACCCAGTTTTAAGGTA TCATTACACCCCATCCGGTGGAGTGCAACAATACTTTAAATCAGCAAATT GTCTATTCAGCTCGCACGTAATTGCACAGAAATTCGGTTAAACTTGTATT TACTCAGTCTACACGGACTTACTCGGCAAATTCGGTTAAACTTGTATCTA CTTAGCTTACACGGATTTACTCGACAAACTCGGCTAAACTTGCATCTACT CGGATTTACTCGGATTTACTCAGCCAACATAGCTTACTCGTCTTATATTG AAATTATACACAAGTAACTTGAATTTTCGCTAGTTCGTTATTACTCGGTC TACTTCAGTTTGCTCggttaaaagaaataaatacattAATATCGTTAATT AACTCTCATTTCTTGCACCAGCTCGCTCCTAAATTTTGTGAAGCATGATA TCAATCGAAGCGTATCGTATTTCTATTGGAAACTTTAACGGGACA Run BLAST on NCBI transcript from alignment at sc0000012:1120854..1123886- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001978 ID=TCONS_00001978|Name=TCONS_00001978|organism=Clytia hemisphaerica|type=transcript|length=3033bp|location=Sequence derived from alignment at sc0000012:1120854..1123886- (Clytia hemisphaerica) CCAGGCTACGCAATTAGCCGCATTCCGAATGAAATTATCCAGGCTATTTT
GCTTTTCAACGTGGTTGGATTGCTGATAAACTTCCCTTCAAATTCAACAA
ACACTGTTTATCGAGAGGATGCTTGTATACGATTCTTGATCATCAATAAA
GTGTTTGGTTTGGAAAGTGATAAAAACTGACTTCATTCCATTTCTTTTAA
AAGGTATGGATTTAACACTGCATTTGACAATTATCTGATTAATTTTGAGG
TATCTAAGATCTTGTAACGGTGGGTAGACTGCTCCAGTTCTAACACTGCA
TTTTTGCCCTGCATTTGACAATTAATTTCAATTAGCAACTTCTACCGTGA
GATTGGGTAACTTGCATCAGTGGAGGCTAACTTGCATAGCCCTCAAATGA
ATGACCTGGCTGGTCATTAAAATACAAAGTTAAATCAAAACAAAAATGGT
AGAGTAGAGCTGCGAGAGCAGAGCTGCGTAGTTGTATTTTAATGACCAGC
CAGGTCATTCATTTGAGTGCTATGCATGTTAGCCTTCACTGATGCAAGTT
ACCCAATTTCACGGTACCCCTGAGGTCTCTTGTAATGGTGGGTGGACTGT
TCCAGTTCTAGTCTGTTACTCCCCCTGTGGACGACATTGATTTTTTCTTA
AAAAAAAGTGAAAAAAACTTGAATGTAAGAGCGGTCCAATCGAATACAAT
TGAATCAATCGAACGCAATTGAACATAATTGAATGCAAGTTACCCAATTT
CACGGTACCCCTGAGGTCTCTTGTAATGGTGGGTGGACTGTTCCAGTTCT
AGTCTGTTACTCCCCCTGTGGACGACATCGATTTTTTCTTAAAAAAAAGT
GAAAAAAACTTGAATGTAAGAGCGGTCCAATCGAATACAATTGAATCAAT
CGAACGCAATTGAACATAATTGAATGCAAGTTACCCAATTTCACGGTACC
CCTGAGGTCTCTTGTAATGGTGGGTGGACTGTTCCAGTTCTAGTCTGTTA
CTCCCCCTGTGGACGACATCGATTTTTTCTTAAAAAAAAGTGAAAAAAAC
TTGAATGTAAGAGCGGTCCAATCGAATACAATTGAATCAATCGAACGCAA
TTGAACATAATTGAATACAATTGAATCAATCGAAGCAATCGAAGCAATCA
AACGGCAATTCCTGGGTAATATTTGATTGCGATTTGATTGCGTTCAACAA
TAGAATCGTAATTATTCGATTGCGTTCAATTGCGTTTTAATTTATTATTC
AATTTATTTATTCAATTTATTATTATTCAGGGGTCTGGTTACTAACGTCA
ATTTTCATCTGGTTACTAACATCAATTTTCATTCACAACGTGAAGGCTTC
TTTACCGTTTCCCTGCACATCTTCTTTGACGCAGGGGTTTTATTGTTGCA
TTGCGTAAAAGTTTCCTACCGTGGTGTTTGAATTATAGGAAAAATAGAGA
AAGAAATAAACTAGAAAATGTCACTAACTTTTTAGTATTTATGATAAGGT
AGCAGATTTCTGATCTGGGGCATAATCTATGAAAAAATGTCTACCTTGGA
GAGGGTTTATTTTTAAGCAGATAACAATAATAATTTTTTTGTTTCTTTAC
AGTTTCCATATCTGTTCGATCAACCCTAAAGACACTGGCAACAGAAGATC
TTACTTAACTGGTACCCAGTTTTAAGGTACATTTTATCATTTATTAGGGT
TCAGAAAAAAAGTTAACACGTCCTACATCAATATGCCAAAAACATTTTGT
TCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACGGCACGTTT
GTTAAATTTTCTAAAATTTTCCATCCACAACGGTCCTTATTAGGATCACC
ACGTTTATTGATTTTTGAAAATATTTTCAGCTGTCAAAAGGAAAGTCCCT
TATTTTGATCCAAATAGCCTGATTTTACCCTGTATTTACTCTATTTTGGA
ATTTTTCAGAAGTACAATTTCTCAGGCCCGGGAAGTTTTGAAAAAGTCGG
GAAGTTTTGAAAAAGTTCAACCCCCAAGTTTATTTTGTTAAACACCTGAG
AATACGCATAAAAGTTTTCACAAATAAGTTAGCAGATTTCTGATTGGCGT
AATCTGTGAAAAATGTCTTCCCTGGGGAGGGTTTATTTTCAGACATAATA
ATTTTTTTCGTTTTTTTTTTACAGTTTCCTGATCCGTCCAATCAATCCTA
AAGACGCAGGCAACAGAAAATCATAACTGGTACCCAGTTTTAAGGTACAT
TTAAATTTATCTATTGTATTGAGATTCAGAAAAAAGGTTAACAGTATTAG
ACCCCATTAGGTTTCCACAAATTCTCGATTTTGTCATGATTAGTTAGTCA
TAGTGCAGACCCCCTTAAAAAATAAAGACTCAAAAAGGCAAAAGAATATG
GTCTGAAAGAAAAGCCTTCTTCATAGATAAAAGGAAAGGCAATAAATAGT
AAAGGCGTTGAATCTTTATGTTGAATCTTGGCAGTGTTAAAGTTTACCAA
TTTTATTTTTACCTACTCCCTTTTTTGATTAAATATCTTAAGATTTTCAA
CATATAATATATAGATTTCTTTCTTTCTATTTTAGGTATCATTACACCCC
ATCCGGTGGAGTGCAACAATACTTTAAATCAGCAAATTGTCTATTCAGCT
CGCACGTAATTGCACAGAAATTCGGTTAAACTTGTATTTACTCAGTCTAC
ACGGACTTACTCGGCAAATTCGGTTAAACTTGTATCTACTTAGCTTACAC
GGATTTACTCGACAAACTCGGCTAAACTTGCATCTACTCGGATTTACTCG
GATTTACTCAGCCAACATAGCTTACTCGTCTTATATTGAAATTATACACA
AGTAACTTGAATTTTCGCTAGTTCGTTATTACTCGGTCTACTTCAGTTTG
CTCGGTTAAAAGAAATAAATACATTAATATCGTTAATTAACTCTCATTTC
TTGCACCAGCTCGCTCCTAAATTTTGTGAAGCATGATATCAATCGAAGCG
TATCGTATTTCTATTGGAAACTTTAACGGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001978-exon-sc0000012-1575043694:1123684..1123886 | TCONS_00001978-exon-sc0000012-1575043694:1123684..1123886 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1575043694:1122211..1122284 | TCONS_00001978-exon-sc0000012-1575043694:1122211..1122284 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1575043694:1121643..1121712 | TCONS_00001978-exon-sc0000012-1575043694:1121643..1121712 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1575043694:1120854..1121301 | TCONS_00001978-exon-sc0000012-1575043694:1120854..1121301 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1510915933:1123684..1123886 | TCONS_00001978-exon-sc0000012-1510915933:1123684..1123886 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1510915933:1122211..1122284 | TCONS_00001978-exon-sc0000012-1510915933:1122211..1122284 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1510915933:1121643..1121712 | TCONS_00001978-exon-sc0000012-1510915933:1121643..1121712 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1510915933:1120854..1121301 | TCONS_00001978-exon-sc0000012-1510915933:1120854..1121301 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1491911889:1123684..1123886 | TCONS_00001978-exon-sc0000012-1491911889:1123684..1123886 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1491911889:1122211..1122284 | TCONS_00001978-exon-sc0000012-1491911889:1122211..1122284 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1491911889:1121643..1121712 | TCONS_00001978-exon-sc0000012-1491911889:1121643..1121712 | Clytia hemisphaerica | exon |
TCONS_00001978-exon-sc0000012-1491911889:1120854..1121301 | TCONS_00001978-exon-sc0000012-1491911889:1120854..1121301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000012 | supercontig | sc0000012:1120854..1123886 - |
Blast
The following BLAST results are available for this feature:
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