TCONS_00001974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001974
Unique NameTCONS_00001974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001974 ID=TCONS_00001974|Name=TCONS_00001974|organism=Clytia hemisphaerica|type=transcript|length=1761bp
GGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAA
AAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCC
TTCTTCGTTTTTTCGTAcaattttgaagatattttaattTTCGTTTGGTA
TATGAAggaattttttgctcaaaacaaaaatggataaaattgACAGCAAA
CAATTCGTCAATAAACTTgTATCAGGCATGTTTGAAACAAATTTAGACGA
ATCACACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCA
AACCAACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACAC
GCAGCCAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCA
AATTTCGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACC
ATGGTCCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTG
TCACCTTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTT
CTCTACCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAG
CAGCCGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAA
TGGTTCGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACA
GGCGGATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTA
GTTTGAGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCAT
AATAACATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGC
AGAACGAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATG
CTGATAAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCT
TTAGAGGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGC
AGCCATTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGT
TTTGTAATCAAcgacaaaagaagaaaagaatgaaGTTTTCAGttcattaa
aattttgtttggtcgtgatgaaaaataaaaacactgacGACATCTTTTTT
GTAGATATATTTATGATCATCAACACACCTCGTCCCATCTAAAATTAAAA
GGGCTTGGGAGAAATAAGTAAATATGTTTGATTTGCCTCaagagtaaaaa
aaagaaaatttgactaGGTTAGATATCATTTTTACAGGGAGTTTTGTGTT
CCTATCTTCTGACAGGTTTTTGCCCATTTTGAAACCATATTTTGTGTGTG
CATGTTTTTATAAATCTTCATCAAGTTCTACAGTAACTTCTGGAGTCAta
gttctttttcaaattttactacttctgtttattttattttattgtatttg
tatttttattttgtccttgtatattttggcttttttatgccattttttgt
tttctttccttttttatttttccttttttttatcatttcttcTTAAATTA
ATGTATATAGTTtataaatattataaaataaaatgccTTTTGTATTATTT
TGCACATTTTCGAGGTTCCTAAATGACCTCCTAAGTGACCtatgtattat
tattattgtttatTCGAATTTTGcgacaaagaaaatttctttttttattt
atgatgtTTTGTCAAAGAAATCGTACTTTTTGATGacaaaaagaaattac
aaaagaaaaac
Run BLAST on NCBI

transcript from alignment at sc0000012:1098370..1100877-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001974 ID=TCONS_00001974|Name=TCONS_00001974|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0000012:1098370..1100877- (Clytia hemisphaerica)
GGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAA AAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCC TTCTTCGTTTTTTCGTACAATTTTGAAGATATTTTAATTTTCGTTTGGTA TATGAAGGAATTTTTTGCTCAAAACAAAAATGGATAAAATTGACAGCAAA CAATTCGTCAATAAACTTGTAAGTCCCTTTTTAGGACCTTTTTTTTGTGG TAGTATTTCATGGCTATACTTAAAAAAAAAATCAGAATTGGAGAGTTTAA AAAAAATGTTTTATAGTTTTGAAGAACGCTATGATAGATGCATTCAAATC ATTCAATAAAATATGGTCACAAAACTCTTCCTTCATCAATTATTGATCCA CTTCAATTGATTTGTTATGGACGCGAAAATGCCTGCTTTCAAATGGAAAA AAAAATCAATGATTCAATTTTGAATTGACATTTTTTATAAAATATTCGTT ATTCATCTGTTTTTATGCGAGATATATAGCGGCGATAGAAAAGTGATAAT TTATGTTAATTGCGTGTAATTAATTCTATTTCACGGCTTTATTCAGAATA AGTGCTGTTTTCAAATTTCAAGTGTTTGTTATGTTTGGGTGTGTAGAAAA CGCCTACTTTTAATTATTATCATGCAGAATTATAGCGGCTCTTAAAATGG CCTTTGGCATATAGCTGTATATGAAAAATTTGAAGGGGTTGAAGGGACCA GCTCTTATTGAAGCTAGTTTACATAAACATCGGAAAGATTCTTTTTTAAA GTTAGTGTTTTGTGCTATTGTTTTCCGGGTATTATGATGTTTGGTCGTCT TCCGATCGTGTAAATCGATGAATGAATCGATAATTTCAAAGGAGAACCGA AGAGTCATTCCCTGGCCACTTTGACATCGACATTATGTAAATATCTTTTA ATTTCTATTTTTCAGGTATCAGGCATGTTTGAAACAAATTTAGACGAATC ACACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCAAAC CAACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACACGCA GCCAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCAAAT TTCGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACCATG GTCCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTGTCA CCTTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTTCTC TACCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAG CCGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAATGG TTCGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACAGGC GGATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTT TGAGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCATAAT AACATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGA ACGAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTG ATAAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTA GAGGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGCAGC CATTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGTTTT GTAATCAACGACAAAAGAAGAAAAGAATGAAGTTTTCAGTTCATTAAAAT TTTGTTTGGTCGTGATGAAAAATAAAAACACTGACGACATCTTTTTTGTA GATATATTTATGATCATCAACACACCTCGTCCCATCTAAAATTAAAAGGG CTTGGGAGAAATAAGTAAATATGTTTGATTTGCCTCAAGAGTAAAAAAAA GAAAATTTGACTAGGTTAGATATCATTTTTACAGGGAGTTTTGTGTTCCT ATCTTCTGACAGGTTTTTGCCCATTTTGAAACCATATTTTGTGTGTGCAT GTTTTTATAAATCTTCATCAAGTTCTACAGTAACTTCTGGAGTCATAGTT CTTTTTCAAATTTTACTACTTCTGTTTATTTTATTTTATTGTATTTGTAT TTTTATTTTGTCCTTGTATATTTTGGCTTTTTTATGCCATTTTTTGTTTT CTTTCCTTTTTTATTTTTCCTTTTTTTTATCATTTCTTCTTAAATTAATG TATATAGTTTATAAATATTATAAAATAAAATGCCTTTTGTATTATTTTGC ACATTTTCGAGGTTCCTAAATGACCTCCTAAGTGACCTATGTATTATTAT TATTGTTTATTCGAATTTTGCGACAAAGAAAATTTCTTTTTTTATTTATG ATGTTTTGTCAAAGAAATCGTACTTTTTGATGACAAAAAGAAATTACAAA AGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001017XLOC_001017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001974-exon-sc0000012-1575043694:1100660..1100877TCONS_00001974-exon-sc0000012-1575043694:1100660..1100877Clytia hemisphaericaexon
TCONS_00001974-exon-sc0000012-1575043694:1098370..1099912TCONS_00001974-exon-sc0000012-1575043694:1098370..1099912Clytia hemisphaericaexon
TCONS_00001974-exon-sc0000012-1510915933:1100660..1100877TCONS_00001974-exon-sc0000012-1510915933:1100660..1100877Clytia hemisphaericaexon
TCONS_00001974-exon-sc0000012-1510915933:1098370..1099912TCONS_00001974-exon-sc0000012-1510915933:1098370..1099912Clytia hemisphaericaexon
TCONS_00001974-exon-sc0000012-1491911889:1100660..1100877TCONS_00001974-exon-sc0000012-1491911889:1100660..1100877Clytia hemisphaericaexon
TCONS_00001974-exon-sc0000012-1491911889:1098370..1099912TCONS_00001974-exon-sc0000012-1491911889:1098370..1099912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1098370..1100877 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0902934 0.0883341 41.8947 26.7635 27.7665 32.4032 9.21408 11.5041 11.7808 1.9089 19.8535 15.4381 8.081 12.2503 19.859 17.2495 7.00574 9.23885 11.6398 6.85804 3.3887 3.65823 9.50958 13.9011 3.68433 0.840307 0.0755386 0
Blast
BLAST of TCONS_00001974 vs. Swiss-Prot (Human)
Match: PO4F3 (POU domain, class 4, transcription factor 3 OS=Homo sapiens GN=POU4F3 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 3.562e-79
Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 3
Query:  627 ECTPRELEWFAERFKQRRIKLGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSAWLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPSSDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFS 1091
            E  PRELE FAERFKQRRIKLGVTQADVG ALA+LK+PGVGSLSQSTICRFESLTLSHNNM+ALKPVL AWL+EAE A R K         +++KRKRTSI A EKRSLEAYFA+QPRPSS+KIAAIAEKLDL KNVVRVWFCNQRQK+KRMK+S
Sbjct:  181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335          
The following BLAST results are available for this feature:
BLAST of TCONS_00001974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PO4F33.562e-7980.00POU domain, class 4, transcription factor 3 OS=Hom... [more]
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