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TCONS_00001967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001967
Unique NameTCONS_00001967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001967 ID=TCONS_00001967|Name=TCONS_00001967|organism=Clytia hemisphaerica|type=transcript|length=1280bp
GGTCGTTTGATTCGCCGTTCGCTtctttcgattgacatcgtctggaatta
actacacctttttttttaaacaatcaatcaaattttatgtaaaaaagaaa
agaaatatcaagaaaaattttaacaaggacgaaaataaaaaacattgatG
ACTAATACCTGGTTGCTGTTGGAAGTGTCCATACATCTTGAAGAGCTTGA
TTAACCCTAAATTTGTCAGAGAAAAGACTTTTTTTGATGGTTTTCGCTgc
caaaaattgatttatttatgTTTCAAATCTACCATTTTGGATTACCTAAT
GTTTGTTAAACGCCGTAAATATGATAGGCGGCCGCACGCCCCACGCGCCG
GGCGGTCATAACTTGCAACCATTTTGTGCATATCATTcgatccactgacc
tttatataataAGGTTATAAAAGGTCAGTGATTCGATCACACGTGGTGGT
TCATTGGTTAAAGCAGGTTACCAGTTACACTCCCATCCCACAAAGACATA
TGTACATGACATATACATAACAACATAATATATATTCAGcatataagaaa
aatattaaaggCAATACGAGCCAGTACATTTGTAAGGTTTCTAAAACACT
CCATGTCAGGataaacaTAATGCCACTTGGAGATGTGCGTTTGAATCCTG
AGGACCCCTTTGAAAAGATAGTCTTGTTGGAGCAGAGCTTACAGCAAGAA
GGATTCAACAATGGTTTTGACAGCGGTAAACAATCAGGACAGATTGAAGG
TTTTCATACTGGTTTAGTTTATGGTAAAGAACTTGGTAAGGAAATTGGAT
TTTATAAAGGATTTGTGTCTTGTTATTGTGAACTTTTAACTGAACAAACT
GCATCAAAGCGACAACTGAGTTTGCTGAAACAACTTTCTGGTTTGCTTAA
TGAGATAGATTATGAAAATTCAGAAGATGAGGGAATGGATGATAAGATGG
CAAAAATCAGAACCAAATTCAAACAATTGTCATCAATCCTTAAAGTGCCT
GTCAATGTCAATAAAGATCCAGCTTTGTTGAGTTTTTGAAGATAAATTGG
CAAAGAAAGGTATATACTTCTATACTTTGgataaattttgcaaattttca
aatattttaaattccttgtCTATTTGTGTTTGTTTGTATGGGCAGGTTTT
GATATCATAGTTTTTTTATTCTTAACCCCTCCCCCATTCCACATATTTTC
ATGTGCATTTAAAAATTCAAGCTCATCTCATTTAAATGGcaaattttagt
taaattttgattttgttgattgaAACAAAC
Run BLAST on NCBI

transcript from alignment at sc0000012:980670..987805-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001967 ID=TCONS_00001967|Name=TCONS_00001967|organism=Clytia hemisphaerica|type=transcript|length=7136bp|location=Sequence derived from alignment at sc0000012:980670..987805- (Clytia hemisphaerica)
GGTCGTTTGATTCGCCGTTCGCTTCTTTCGATTGACATCGTCTGGAATTA ACTACACCTTTTTTTTTAAACAATCAATCAAATTTTATGTAAAAAAGAAA AGAAATATCAAGAAAAATTTTAACAAGGACGAAAATAAAAAACATTGATG ACTAATACCTGGTTGCTGTTGGAAGTGTCCATACATCTTGAAGAGCTTGA TTAACCCTAAATTTGTCAGAGAAAAGACTTTTTTTGATGGTTTTCGCTGC CAAAAATTGATTTATTTATGTTTCAAATCTACCATTTTGGATTACCTAAT GTTTGTTAAACGCCGTAAATATGATAGGCGGCCGCACGCCCCACGCGCCG GGCGGTCATAACTTGCAACCATTTTGTGCATATCATTCGATCCACTGACC TTTATATAATAAGGTTATAAAAGGTCAGTGATTCGATCACACGTGGTGGT TCATTGGTTAAAGCAGGTTACCAGTTACACTCCCATCCCACAAAGACATA TGTACATGACATATACATAACAACATAATATATATTCAGCATATAAGAAA AATATTAAAGGCAATACGAGCCAGTACATTTGTAAGGTTTCTAAAACACT CCATGTCAGGGTAAGCAGTTCAATTTGATTTTTATACTTTTCCCTTGGTT CCTTCCTTTCTTTCTACTGTACTGTCTGATGACGACAGCGATAGCAGAGT GCTGCCAGACATGATTTCTAACCTCTGTTCAACAAGTTTTCACTACACTT ATACATTCAACATACCTGATTGTAAAGGATTCTTCTTTGCGGCTCATTTT ATTACTTACAATCAGATTCTATATTTTCTCTCGCAATCAACCAAAACAAC AATACACCTTTCCTGTAATTTGTAAAACTAATGCATGCGAATTATTTTGA TGCTCTCTATCCTTTGGTCTCTGGAGGTAAACAAACCCGTCTTTGCCTGT GCCTGCTGCGTTCTTAGGGAAAGTTGCAGTTGGTTTTTGAGCTTTTCTTA AGTTCTGTCTAACAAAATCCCCTCAAATTTTAGTATGTTCAATCTATTCA TGATATTATACCACTCTATCAGAATTAGACCAGGGTTATCGGCGTTAGGC CAACCAAAATTTTGAAATATTTAGGGGAGCCATCCAAACCTGCCACCAAA AACTAACTTTGATACACCTTTCCCGTAATTCGTAAAACAGATGCGCGCGC ATTATTTTGATGCTCTCCACAGTTTGGTCTCTGGAAGTAAACAAACCCGT TTTTGCCTGCGCTTCCTTTTAGGGAAAGTTTTTTTTTTTTTAGCTTTTCT CAAGTTCTGTCAAACAAAGTCCCCTCAAATTTTAGTATGTTCAATCTATT CATGGTATTATACCACCCTGGAAATCTTTTGCCAAAAGAAGATCGCTATT AAAAGTTAAAAGCTGAAAACCCACTTTCCCTAAGGCAATGGCATGGGAAT TTGATGTTCTGTTTACCGTCGCATTGTAAAAAATATTTGATGCGGCAAAA TTTCATTATTCATTATTCATTATTCCTACCTGGTGCTTCCCATCTCCAAC GAAGTTGAATTTCACGATTCCACCGTGAAATCGAGCTGCTTTCACTTTCG GAATCAAAATGACATGACAAGACGCATCTAAAACGCGAATTTTTAAAACG CCCTTGTAGCCGCCCACTGCTTAATAAAATGCCTGTCCCATTTGCGGACG TGATTGGAACCATGTCTTTTACTCGAGGCGTACATTTTGTTAGCGAAGAT GTTATTTTTGATTCACGTTGAGTGTTTTGGATAGCTTGGCACAGGAAAAT AAGAAAATAATGAGTTTTTAAGAAATAATGAACTTTTTTGAGCGGCGGCT CAAGAGCATGCGGGCGGTCAACGGTAAACAGAACATCAAATTCCCATTGC CTAACCCCTCGCAGGCAAAAACGCGTTTGTTTACCTCCCAAACAATTTTA TACACAACGGTGGAGCGCACATTTTTCCAGGCCATTTCTGAGAAGTTTGA ATCACGGGGAAGGTGTAATGGTTGTTTGTGGATATGGGTGTAGGTTGTTG ATGCTACTCGTGGATGTTTACTCATGGCAAAGAAAATTTTACCAGAAATA CCGTCAAAAGTAGTTTAATTCTCGTGTGGACAAATTTTTGCAAATCAACC TCAGTTTCACCAAATTTCTTACATTTTCCTAAAGGTTTTGGCCAAAATTT GGATGATAAATTTCATGAGGACTAATTTTTCACGAAAATGGCCAAAAATC TCAAAGATTTAAAATTCAAGCAAAATTTAATCCAGTTATGGCCAGACGAT CTCAATCGAACGGAATCAACGATCGAACGCAATCGACTGATTGAATTTCG ATTGTCGAATGCAATTGAATCTCAATCGAATGTCAAAATTCTGGGTAATA TTCAATTGGTTCGATTGTTGTTCGACTGGTTCGATCGTCGATTCCGTTCA ATTGAGATCGTCTGGCTTTATTCTTGCAGCTTCCCAACATTCGATTGAGA TTCGATTGCGTTCGACAATCGTATTTCAATCGGTCGATTGCGTTCAATTT GGTTCGATTGGTTTGATCGTCGATCGTCTGGTTATGGTATCAATATTAGA CAAGTTAATTCCATGCCAATTGTTACTTTGTCATGTATTTTATTTCTTTG ACTGCTTTGAAAACCAAAATAAACAGCCCCAATGCTGAAGTCTTGGGTTT TTTGTTTTCCGGCTTACACGCACGGCCCTCAAATTTTAGCATAGGGATGA TAAAGTTTCTTAGGGGGAGGCAGCTTGGAGACTTCAAAAATTGTTGGGAT GGGGGGTCATGCAGTTGGTTCCAGACATCATGACGGTTAGTACCGTGGTA CTGTAGGTCATATTTGATTTTTGGAATTTGCGGTTAGTACCTTGTGGGTA CACTTGGCTAAAATTGGTTCACGTGCACGACTTTGTAAAAATTTTGCATG CTTCACATGCATTGTCTTTGTTACGTTAGTGATTCGTCGCTCTCCTACTT ATTTCTTCCTTGAAAGCTTGCATGTCAAAGATTGCTTGTTTCAAAATTAT GTGCAGTTGGGTGTCCCATCCGCAACAAAAGCTCCATTTATGCTTACAAG TGAAGATCTGGGAACTAGAGGACCCCCATTTTTTTTTGTTGTGACATATT AAATGGTTTCTTGCGTTAAAGACATTTATTGCCTTTAAATAATCTTTTTT AACTGGTAAAAACTAATACAGTCCAAAAATTTGTCCCGTCCGCAACGACA CAACAGGGCTCTAAATAACGGTCGCCCAAATAGCTTCATGTCCGACCCAA AAATCATAATTTTCAAGCTAAAGCAACCCTGATCAGACATTATGTCGGAC CCACTGGAAATCGTTATTTCGAGCCTTGCACAAAAGTCTTAATTTCTCTT TTTTTGAGACAACTTTAATGTTCTAACTGTATCAAGCCAATGAACTAGAG GGAACCACATGCTTTTTGCAGCAGTATCATTTTTCTTGAGATTACATGTA CTAGCTATGAGCGAAAAAATTTTTGTCCTGTCCGCAACAAAGTGTCCCGT CTGCAACATTTTTCTCAGGATTGGGGCTGTAACAAACAAATTCTATAACA ATCCAAGGAAGGCTATTTAGTAGAGTTCACAAAAATGTGAAGTTCTTAGA AATTGCATTTGCCAAAGTTGAGTTATGGGTCCTCAAAAAGTGCCGATGCG GACGGGACATTGTACTATTTTTCTGCAATTCACCCAGTTAAATTGCCAGC TTTCTGTTTTTATTAAGTTGTGCATTACTCACTACAATGTCTTCTTAAGC TTTTTTCCCAGTCTTTTGTCAAAAAATGCAAAAGTGATATTTTTTATTTC TGGGGTTTTAGACCTAAATAATGTTGGCTTGGGCAGACTTGACTTTAAAT GTTGGGCCTTGTAGCTTTGTATCATATATGTTAGGCTTTGTGTTTATCTA TATATTAATATATGTAGTCTGTATGTCTGTTTTCTGTGTGTCACTTGTTT TCGCAAGCAATGTTTTTGTTCTTTTAAAAGATGACTTTGAGTTGTTCGAT AAGTTTTTTTTGATTGATTGATTATAATTCTTGACTTGCTTTCTTTTTTT CTCTCTTTTCTTTTGTTTTATGTTTTTGAACTTAATTAGCGACCTCTTGA TTTATTAAGACATTTGAATTCTTTTCAAAACAAAGCAAAATCTTTTAACA AAATCTGTTTACTTAAGTCGTTATAGAAAAAAACAAAACTAAAATAAAAC AACAAGACAGTTTGTCAGAAGAACAGCAACTTTTTAAAAAATTTTACCGC CAAAAACAAAGGAGTTCTTTATTCTTAACCCTATTCTACCTAGGGGGGGG GGCTTTTTCTGTTCGGAGGTCAAATTATTGGTAATAAATAGCTCCTGAAA TAAAAGAGCTTTTGCCATGAAATTTTCTGTAAATTCCTAACTTTTATTTA GCTTCAAAATAAAAAAAAATTTGACACCTAAAAATTTTCACACCTTGAGC ATTTCTGACAGTAAATGTCACAAAAATTGACACTTTTCCAATACAAATTT ATTTTTTAAACCGTAATTTAATGAATATTTAGGATAAATTAATCATTTTA AAACTCAGGAAACTTTTTTCTAAAGCCTTTGTTAGAATACAATAGCAATT TTCGGTCTTAGGTCACTTTGGGCATAATGAGTGACGTCATCAAAAAAAAA TTCCGTCAAAAGTTACCTTATGCGACAAGGATCTTGTGTGCCAAATTTCA TCCAAAAAGACCCACTAGATCAAAAGTTAAGGGGTGGTACAGGATCAGCC CCCCCCCCTAGTTCTGAACAGCCCCTAAAGGCCTAGGTTGAATAAGGTTA AGAACATCCTGGAACATCTAAGAATTACGGCAAAATAATTATCGAGTCAT TCATTGTTGAATTCGAAAAAGGTATGACAAAGGTTTAATAAAAAGCAACC AGGACATATTTTAGAAAGGCATGGTAGCGTCCGTTGGTGACCAAAAAGGG CACTTTTTGTAGTATTTTACTACAAAAAAGGCTGATTTTACCAAAATTTT AGTGATTTTAGAAGGGGTAGCGTCCGATAAGCGGACACTAAAAGGGCATT AAAAATGGTCTGGCAACATAGAATCGCACTATTACGTTATTTTGTCTGCG TGTCTTTCTTTCCTGAACTTGTGTCGTGTCTATAATTTCACCCTCCTTTT AAACAAATTCATTCAAAATGAAGCATAAACAAGTTGCATTTCAATCGCTA AACTTTTTTTTAGTGGTGGGCCATTCACCTCAGAGAAACCTACCTTATTG AAACTAATTTTTGCGGGAATTAATTTTAGCTTTTTTCGTGGTTTTTCGTC AATCGCAAAAATTTGAGCCTGCGAATTTTTTCCAATGAAAATCCAAGGAA AATGAAAGAAATTGTCAAAAAAAGGGCAAAACCGTGAAAATTAAAACCTG CAAAAATTTCAGAATGAAAAAAACGCTAAATTAATTAAAACCCGCGAAAT GCAATTTTTAGGATATTTTTTTTCAACCGTGAAAATTAGTTCCCGCGAAA ATTAGTTCCAATAAGGTAAACAAAAGGGATGAGCTGGAGTTTTTATAAGA TACTTCACTAATTGGTCATTTGAAGTGATAGAGATGACGCATTCTTTAGA AAAAGTAACAAAATTGTTTTATTACTGGTTAACGACGAACAAAATGAAAT AAGAGCTTGTAAAAACTCCAGCTTGTCCCAAATAAAACAATTTCTGTCAC AACCATCACGTAACTACAATGAAAAGTTTCAAAAGTTTTCTGCAACTGTT TCCATCTAGACAAACTGCTAATGAATTTTTTGAATCATTTTTTGTTTCTG AAACCGATTTGTATATGTTTTCTTTTCGTTATTAACCCCACGGTCAATAG CAACTTTTTGCGTATTTCATTTTTCAAATGTTTATATTTGATGAAAAATG TTTCAAGTGGCCCCAGACCTTTATCTTGACATCAAAGTTTCCAAAATTAT TGAAAACTAGGGCAAGTAGGGCTGCCTAGGGTATTAACAGGTTTTCAAAT AGTGATTACCTTGAGCTTTGGCCGCTCAAGACCAGGTGCCAGCCTGGTAA TAGTCAAATGTACTTAGTACTGCAGTGTACTAGGTCTAGGTGCAAAAAGG AGTGGTGTCAACTGGTGTATGTCAACTTTGTATTTTGCTGTTGTTTTTTG CTACAATTGGGCCTATGAATAATCTGAAGCATCTCAAGTTGAGCCCAGTG CGTTGCGCACGTTCGACTATTTGGAACACTGAAGACAATTGAATGACAAT TGATCCACCTAGAACTAGGTGTTTTGTGTGAATTTGATTGCTTTGACAAT TTCAATCGGTTGACGAATTCTTTTCCAATCTAGGGTGTTTTAAATATCCC ATCAATTCCTTTTCAAGTTAGGAAAACATTTTATAAAGTATTGAACTCCT TCTTCTTTTTTTTTAGATAAACATAATGCCACTTGGAGATGTGCGTTTGA ATCCTGAGGACCCCTTTGAAAAGATAGTCTTGTTGGAGCAGAGCTTACAG CAAGAAGGATTCAACAATGGTTTTGACAGCGGTAAACAATCAGGACAGAT TGAAGGTTTTCATACTGGTTTAGTTTATGGTAAAGAACTTGGTAAGGAAA TTGGATTTTATAAAGGATTTGTGTCTTGTTATTGTGAACTTTTAACTGAA CAAACTGCATCAAAGCGACAACTGAGTTTGCTGAAACAACTTTCTGGTTT GCTTAATGAGATAGATTATGAAAATTCAGAAGATGAGGGAATGGATGATA AGATGGCAAAAATCAGAACCAAATTCAAACAATTGTCATCAATCCTTAAA GTGCCTGTCAATGTCAATAAAGATCCAGCTTTGTTGAGTTTTTGAAGATA AATTGGCAAAGAAAGGTATATACTTCTATACTTTGGATAAATTTTGCAAA TTTTCAAATATTTTAAATTCCTTGTCTATTTGTGTTTGTTTGTATGGGCA GGTTTTGATATCATAGTTTTTTTATTCTTAACCCCTCCCCCATTCCACAT ATTTTCATGTGCATTTAAAAATTCAAGCTCATCTCATTTAAATGGCAAAT TTTAGTTAAATTTTGATTTTGTTGATTGAAACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001011XLOC_001011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001967-exon-sc0000012-1575043694:987196..987805TCONS_00001967-exon-sc0000012-1575043694:987196..987805Clytia hemisphaericaexon
TCONS_00001967-exon-sc0000012-1575043694:980670..981339TCONS_00001967-exon-sc0000012-1575043694:980670..981339Clytia hemisphaericaexon
TCONS_00001967-exon-sc0000012-1510915933:987196..987805TCONS_00001967-exon-sc0000012-1510915933:987196..987805Clytia hemisphaericaexon
TCONS_00001967-exon-sc0000012-1510915933:980670..981339TCONS_00001967-exon-sc0000012-1510915933:980670..981339Clytia hemisphaericaexon
TCONS_00001967-exon-sc0000012-1491911889:987196..987805TCONS_00001967-exon-sc0000012-1491911889:987196..987805Clytia hemisphaericaexon
TCONS_00001967-exon-sc0000012-1491911889:980670..981339TCONS_00001967-exon-sc0000012-1491911889:980670..981339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:980670..987805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.04936 3.56016 2.51814 2.44766 2.19911 1.67092 0.0774361 0.856709 0.13244 0.0484671 0 0.0790991 0.0378296 0.172283 4.72465e-05 0 0.17306 0.159655 0 0.0733198 0 0.273527 1.32487 0.762363 0.357781 0.0543293 0.133561 0 0.696599 0.796406
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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