TCONS_00001956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001956
Unique NameTCONS_00001956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001956 ID=TCONS_00001956|Name=TCONS_00001956|organism=Clytia hemisphaerica|type=transcript|length=2565bp
ACGATGctttagaaacaaaaaaagaacaagtATCTCTTAACCTGCCTACA
TCATTTCAAGGTTGCTGATTGGCTGGTTGATTCTCTTTCTTAATTAGAAG
GAGACAAATAGAATGGCTGTAATCCGCTTctaattactttttattatcTT
TTGTATTGACGCAAGAATAATTGAATGAGCTGAACTTTTTCTTTACTAAT
TGCTCTAATGAATTATAactaaaataatatttctttttacaataaatgga
taaactttttttttgttgtatGAGGGTCCCAAACAATTTACTGATTAAGG
GACATACAGCACTTTTTAAATACTGCCATATGAACAGGACGGATTTTGAA
AGTCCGTAAGGAAATGTAAATGTTAAAAAATGCGACGCGTGAAGACTTTG
AGCGCGATTATAGGAGCATTTTTGAATGATATTGTGCTTTCCTGCTCTCA
ACAAGAAGATTCCACTACTACTACAAGgtTATTGCTGGTGTCATTATTAG
GTAAAAGGAGTACTGAAGAGTCGTGACAGATTTTACTACAGAAATGTTAG
ACAACGTGGACGGCAACTTTACATTCCCTCATGACATGACATGTGAAGAG
ATGTTCCCAGACTTTACACCAGACGTATTTGATTATTTCTGCTCCGTTAC
AACAGACACTACTCAAACACAAAACGATACAACATTGGAATTTTTCGAAC
AAGTTTGTTGTGTTGATCGCACGCCAGTTTCGGTTCAGGACGATAGCTCT
ATGCGTAAAACGCTATACATGATTTGTCATTCACAGAATTTGACAGTGGA
TGTTGAAAATAACATTTGTAGAGAATTTGAACCATATTACATGCCCCCGG
AACCGTTTACGATAACACCAGCAACGTATGTAATAATGTCACTTCTGACA
CCGATTGGTTTAATGGCAAACTTATTGATTATAATGACAGTGTTGCGAGC
TAAGAAACTCAGAACAACTACTGGGTTCTTCATTTGTCACCTCGCCATCG
CCGATCTGTTATGTATCTTATCTATGATGGCATACGTGATAGCCCATTCA
CAAATTGAActgaaacaaaattttaatattttgatgatATTCTCATCATT
AGATGTTTTTATCGGTTCAGCTTCATTGCTACACGTGACAGCTGCTAGTG
TGGAAAGAGCCATAGCTGTTGCAAAACCCATGGTGTACCCGTTGATATTG
TGCAAAGAACGAGCCAAGAAGGTGATTCTACTTATATGGGTTTATTGCAT
CGTTTTATTTATCGCTTGTGTTGCTAGAGTATTCGTCAAACCAATTATCT
ACAATTCAATCATATTTTACATAGCAGTTTGTTTAAGCTTCGGTGTACCG
TGCATATTGGTATTAATTTCTTATCTGAACATCTCAATCAGAGCCTTACG
GAATTTACAGATGGAGAAAAGAATTGAACGATCATTAATTATTGTTTCCA
TGCTGAATGATACTCAAAGGAGAGCGCCGAGATATCATCATCAGATACGC
GAATTAAAGCTAGCTNGCTTGTGTTGCTAGAGTATTCGTTAAACCAATTA
TCTACAATTCAATCATATTTTACATAGCAGTTTGTTTAAGCTTCGGTGTA
CCGTGCATATTGGTATTAATTTCTTATCTGAACATCTCAATCAGAGCCTT
ACGGAATTTACAGATGGAGAAAAGAATTGAACGATCATTAATTATTGTTT
CCATGCTGAATGATACTCAAAGGAGAGCGCCGAGATATCATCATCAGATA
CGCGAATTAAAGCTGGCTCTCAATTTGACCATTATGACAGCACCGTTTGT
TTTCGGTTGGGGATATTTCATGATCTGTAATGTTTATGAGGAAGTAACAA
AGACTACATTGGATGGATTAAAAAATTGGTTCCTCAACATGTTACCTTAT
CTTATCTCATGTTTAAACCCAATCACATATCTACTATTCACAAAGACTTT
ACGAAAGGAAGCTATTAAATTGGTACTGAAACCATTCAGTAAGTTCCGCT
CACTACACCATCGACGCTTCTCATCGACATCGCTCATTTTTACCTCACGT
AATAGTAGCAGACACTCAGACTCGTCCGACGCTCGTATGATGCAAAGGGA
GGTCTAAGCTTAAGCTAGATCCCATCATAACGATTAAGCTTTTGACTACT
AAAGCTTTATCCGATGGTAGGAGGGATTGTATTGAGTGTATTGACAAAAG
AAGAAGCAACAGGTCATAGCAGGGACACTAATTAAGTagataataaaaac
aattataattcTTGTAAACATTCAGAAGTAATGGAACAAACACATTAAAA
CGgaattaaaaatgacaaataTTTCAAATCCAAAGGGACGTAAATTTGAA
ATAGGAACACGAACCAAAATTTagaatgtaaaatattttttttcaacgtA
TATAAAAAGATTTAGAGCAATATAGCTACGGGAGATGTAAATAGaaaaca
tgtttaaaacgaCCATTTATCTTTGTAAAATATTATTATCCGTGTAAATT
TTTGGCTGATAgtatagaaaaatatcatatttatttgagaattaaaagaa
aacaacaagaaaagc
Run BLAST on NCBI

transcript from alignment at sc0000012:854410..858593-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001956 ID=TCONS_00001956|Name=TCONS_00001956|organism=Clytia hemisphaerica|type=transcript|length=4184bp|location=Sequence derived from alignment at sc0000012:854410..858593- (Clytia hemisphaerica)
ACGATGCTTTAGAAACAAAAAAAGAACAAGTATCTCTTAACCTGCCTACA
TCATTTCAAGGTTGCTGATTGGCTGGTTGATTCTCTTTCTTAATTAGAAG
GAGACAAATAGAATGGCTGTAATCCGCTTCTAATTACTTTTTATTATCTT
TTGTATTGACGCAAGAATAATTGAATGAGCTGAACTTTTTCTTTACTAAT
TGCTCTAATGAATTATAACTAAAATAATATTTCTTTTTACAATAAATGGA
TAAACTTTTTTTTTGTTGTATGAGGGTCCCAAACAATTTACTGATTAAGG
GACATACAGCACTTTTTAAATACTGCCATATGAACAGGACGGATTTTGAA
AGTCCGTAAGGAAATGTAAATGTTAAAAAATGCGACGCGTGAAGACTTTG
AGCGCGATTATAGGAGCATTTTTGAATGATATTGTGCTTTCCTGCTCTCA
ACAAGAAGATTCCACTACTACTACAAGGTAAGTTCCTCATGTTCTTCTTC
AACCTTAATCCTACATCTTCCGAAAGTCATTTATTCTTCTTAGATAAAGC
ATTTTCTTTTCCTGAATGATGAGTTTTTACCGAAAAATGAAGATTTTTTA
TATTAAAGTAAAACGATTTTATTGATTGCCCAAGCTCGCCCTTCAGTTCC
TTTTATACATACACAATTCTAATATACTTATTTCAAGGTTCTAAATTATT
TCTATCAAGCCAATTTATAATTCTGAATAAAAAGTCCAAAAATGTAATTT
ATAGACGGAGACTCCGTTTTATTGATAGAGCAAAAACATTTTGTTTATTT
GTAAACGACTCAGTTAGTACTTCTGTCTACAAAATGTTCAAGAGAGACCA
ACACTTTAGATTTTTTCCCTTCATTTAGCAGCGAATACTTAAACTTAATC
TTCAAATTCAACATTGAGATTCAAATAATGAAGTAATGACGAAATAGGGA
AGGGACTTGAATTAAAAAACGTACTTTATTTCATGATCCAGTTTGTTGTT
TTTCTCCTTCTTTCTTGTTTACCCTAACTAAGTTTACTCAACTTATTTAG
GATCTCATAGTAGGAAAACTTAGATATTGAGCGAGGGCAATCATCAATCA
TTACAACACAAAAGAGACCAAATTTAGTGGGAACTCATCACTCAGGAAAA
CAAAACTTGTGTGATTTAAATAGAGCTAAACAAATATTTTAGGTTTATAT
TACCCTTGCCTTTCAACTTATAGATCCTTAAACATGAATGTTAAAAATAA
CTTCTTTTTTTCTTTCTAGGTTATTGCTGGTGTCATTATTAGGTAAAACN
CAAGGTAAGTTCCTCATGTTCTTCTTCAACCTTAATCCTACATCTTCCGA
AAGTCATTTATTCTTCTTAGATAAAGCATTTTCTTTTCCTGAATGATGAG
TTTTTACCGAAAAATGAAGATTTTTTATATTAAAGTAAAACGATTTTATT
GATTGCCCAAGCTCGCCCTTCAGTTCCTTTTATACATACACAATTCTAAT
ATACTTATTTCAAGGTTCTAAATTATTTCTATCAAGCCAATTTATAATTC
TGAATAAAAAGTCCAAAAATGTAATTTATAGACGGAGACTCCGTTTTATT
GATAGAGCAAAAACATTTTGTTTATTTGTAAACGACTCAGTTAGTACTTC
TGTCTACAAAATGTTCAAGAGAGACCAACACTTTAGATTTTTTCCCTTCA
TTTAGCAGCGAATACTTAAACTTAATCTTCAAATTCAACATTGAGATTCA
AATAATGAAGTAATGACGAAATAGGGAAGGGACTTGAATTAAAAAACGTA
CTTTATTTCATGATCCAGTTTGTTGTTTTTCTCCTTCTTTCTTGTTTACC
CTAACTAAGTTTACTCAACTTATTTAGGATCTCATAGTAGGAAAACTTAG
ATATTGAGCGAGGGCAATCATCAATCATTACAACACAAAAGAGACCAAAT
TTAGTGGGAACTCATCACTCAGGAAAACAAAACTTGTGTGATTTAAATAG
AGCTAAACAAATATTTTAGGTTTATATTACCCTTGCCTTTCAACTTATAG
ACCCTTAAACATGAATGTTAAAAATAACTTCTTTTTTTCTTTCTAGGTTA
TTGCTGGTGTCATTATTAGGTAAAAGGAGTACTGAAGAGTCGTGACAGAT
TTTACTACAGAAATGTTAGACAACGTGGACGGCAACTTTACATTCCCTCA
TGACATGACATGTGAAGAGATGTTCCCAGACTTTACACCAGACGTATTTG
ATTATTTCTGCTCCGTTACAACAGACACTACTCAAACACAAAACGATACA
ACATTGGAATTTTTCGAACAAGTTTGTTGTGTTGATCGCACGCCAGTTTC
GGTTCAGGACGATAGCTCTATGCGTAAAACGCTATACATGATTTGTCATT
CACAGAATTTGACAGTGGATGTTGAAAATAACATTTGTAGAGAATTTGAA
CCATATTACATGCCCCCGGAACCGTTTACGATAACACCAGCAACGTATGT
AATAATGTCACTTCTGACACCGATTGGTTTAATGGCAAACTTATTGATTA
TAATGACAGTGTTGCGAGCTAAGAAACTCAGAACAACTACTGGGTTCTTC
ATTTGTCACCTCGCCATCGCCGATCTGTTATGTATCTTATCTATGATGGC
ATACGTGATAGCCCATTCACAAATTGAACTGAAACAAAATTTTAATATTT
TGATGATATTCTCATCATTAGATGTTTTTATCGGTTCAGCTTCATTGCTA
CACGTGACAGCTGCTAGTGTGGAAAGAGCCATAGCTGTTGCAAAACCCAT
GGTGTACCCGTTGATATTGTGCAAAGAACGAGCCAAGAAGGTGATTCTAC
TTATATGGGTTTATTGCATCGTTTTATTTATCGCTTGTGTTGCTAGAGTA
TTCGTCAAACCAATTATCTACAATTCAATCATATTTTACATAGCAGTTTG
TTTAAGCTTCGGTGTACCGTGCATATTGGTATTAATTTCTTATCTGAACA
TCTCAATCAGAGCCTTACGGAATTTACAGATGGAGAAAAGAATTGAACGA
TCATTAATTATTGTTTCCATGCTGAATGATACTCAAAGGAGAGCGCCGAG
ATATCATCATCAGATACGCGAATTAAAGCTAGCTNGCTTGTGTTGCTAGA
GTATTCGTTAAACCAATTATCTACAATTCAATCATATTTTACATAGCAGT
TTGTTTAAGCTTCGGTGTACCGTGCATATTGGTATTAATTTCTTATCTGA
ACATCTCAATCAGAGCCTTACGGAATTTACAGATGGAGAAAAGAATTGAA
CGATCATTAATTATTGTTTCCATGCTGAATGATACTCAAAGGAGAGCGCC
GAGATATCATCATCAGATACGCGAATTAAAGCTGGCTCTCAATTTGACCA
TTATGACAGCACCGTTTGTTTTCGGTTGGGGATATTTCATGATCTGTAAT
GTTTATGAGGAAGTAACAAAGACTACATTGGATGGATTAAAAAATTGGTT
CCTCAACATGTTACCTTATCTTATCTCATGTTTAAACCCAATCACATATC
TACTATTCACAAAGACTTTACGAAAGGAAGCTATTAAATTGGTACTGAAA
CCATTCAGTAAGTTCCGCTCACTACACCATCGACGCTTCTCATCGACATC
GCTCATTTTTACCTCACGTAATAGTAGCAGACACTCAGACTCGTCCGACG
CTCGTATGATGCAAAGGGAGGTCTAAGCTTAAGCTAGATCCCATCATAAC
GATTAAGCTTTTGACTACTAAAGCTTTATCCGATGGTAGGAGGGATTGTA
TTGAGTGTATTGACAAAAGAAGAAGCAACAGGTCATAGCAGGGACACTAA
TTAAGTAGATAATAAAAACAATTATAATTCTTGTAAACATTCAGAAGTAA
TGGAACAAACACATTAAAACGGAATTAAAAATGACAAATATTTCAAATCC
AAAGGGACGTAAATTTGAAATAGGAACACGAACCAAAATTTAGAATGTAA
AATATTTTTTTTCAACGTATATAAAAAGATTTAGAGCAATATAGCTACGG
GAGATGTAAATAGAAAACATGTTTAAAACGACCATTTATCTTTGTAAAAT
ATTATTATCCGTGTAAATTTTTGGCTGATAGTATAGAAAAATATCATATT
TATTTGAGAATTAAAAGAAAACAACAAGAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001010XLOC_001010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001956-exon-sc0000012-1575043694:858117..858593TCONS_00001956-exon-sc0000012-1575043694:858117..858593Clytia hemisphaericaexon
TCONS_00001956-exon-sc0000012-1575043694:854410..856497TCONS_00001956-exon-sc0000012-1575043694:854410..856497Clytia hemisphaericaexon
TCONS_00001956-exon-sc0000012-1510915933:858117..858593TCONS_00001956-exon-sc0000012-1510915933:858117..858593Clytia hemisphaericaexon
TCONS_00001956-exon-sc0000012-1510915933:854410..856497TCONS_00001956-exon-sc0000012-1510915933:854410..856497Clytia hemisphaericaexon
TCONS_00001956-exon-sc0000012-1491911889:858117..858593TCONS_00001956-exon-sc0000012-1491911889:858117..858593Clytia hemisphaericaexon
TCONS_00001956-exon-sc0000012-1491911889:854410..856497TCONS_00001956-exon-sc0000012-1491911889:854410..856497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:854410..858593 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.158144	0.0928884	0	0.184828	0.284767	0.338001	0.136975	0.5139	1.70751	1.38415	0.283376	0.11142	0	0	1.71232	3.83063	0	0	0	0	0	0.036073	0	0	0.0417843	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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