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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001953 ID=TCONS_00001953|Name=TCONS_00001953|organism=Clytia hemisphaerica|type=transcript|length=870bp
AGGAAAAACAGAAAAGCAAGGCATATAGATAGTCATCTTCAAAGGGACAT
CAGATATCAAAGACAACAGAAAGTCCACTATCAACGTTAACGAAAAGTTG
AGTGGTGTGAGCGAAGATAAgacaaattgaacaaaaagacgTGATCTACT
GCGAGTACATTCATTCGATCGACATCAGTAGAACAAGAAGGGCATTGGGA
AGCCTTACATCCCAACTATTGTTAAAATGAACGTGACTTCATGTAATGAT
ATCATGAAAATGGTACAACCTTCCGGAACAGTGTCTGCAGATTTGATTCA
TGTCATCTTGCCAAATATTTGTGGTATAATTGACAGTATTAATGCATCTA
TGGTGACATTTGAAGAGAGAATTTTTTACGATCATTGCTGTGACCCGATA
CCGTTCATGATCCTGAACAAGACTGTGAACCCTAACAATGAGACTCATCC
TGATATACTCATTAGGGATGTTTGCAATTATATGAAAGATAATAGAAGCC
CACAGGAAGAGCAATTATACAGAGATGTTTGTTTGTCAGCTAATCATCAC
GCAGCAGGTGTTTTGAATCCAGCCTGGCGCTTACTTACATTCATTATCCT
CTCTGTGTTGACACCGATCGGTTTCTTTGCTAACGTTTTGATTCTAATGA
CCGTATACAAAATCAAACATCTTCGCAATACCACTGGTTACTTCATTTGC
AATCTAGCAGTTTCTGATCTTCTGGTTATCTTTCAGATGTTACTATTTGT
GACCATGTATACGTCTGGTGCAATGTCAGATGCAAGTCCCCGAGTTCAAA
GCTTCTTCTTTCCAACAATCGATGTCGTTATTGGTTCAGCGTCTTTGCTA
CATGTAACAGCAGTAACTAT Run BLAST on NCBI transcript from alignment at sc0000012:842710..852420- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001953 ID=TCONS_00001953|Name=TCONS_00001953|organism=Clytia hemisphaerica|type=transcript|length=9711bp|location=Sequence derived from alignment at sc0000012:842710..852420- (Clytia hemisphaerica)
AGGAAAAACAGAAAAGCAAGGCATATAGATAGTCATCTTCAAAGGGACAT
CAGATATCAAAGACAACAGAAAGTCCACTATCAACGTTAACGAAAAGTTG
AGTGGTGTGAGCGAAGATAAGACAAATTGAACAAAAAGACGTGATCTACT
GCGAGTACATTCATTCGATCGACATCAGTAGAACAAGAAGGGCATTGGGA
AGCCTTACATCCCAACTATTGTTAAAATGAACGTGACTTCATGTAATGAT
ATCATGAAAATGGTACAACCTTCCGGAACAGTGTCTGCAGATTTGATTCA
TGTCATCTTGCCAAATATTTGTGGTATAATTGACAGTATTAATGCATCTA
TGGTGACATTCGAGGAGAGAATCTTTTACGATCATTGCTGTGACCCGATA
CCCTTTATGATCCTCAATAAGACTGTAAATATAAATAATGAGACGCACCC
AGAACAATTGATTAGTGACGTGTGTAATTATATGCACCATAATCGAAACC
AACAAGAAGAAGCTCTCTACCAAGAGATCTGTTTAAATTCTTCAACAAAT
AATTCTTCCGTTTTAAATCCAGCATGGCGACTATTGACATTCATCATTCT
ATCCTTGCTTTCACCGATCGGCTTCTTTGCTAACGTTTTGATCCTTATGA
CCGTATACAAAATCAAACATCTTCGCAATACCACTGGTTACTTCATCTGC
AATCTGGCTGTTTCTGATCTTCTGGTTATCTTTCAGATGCTACTATTTGT
GACCATGTATACGTCTGGTGCAATGTCAGAGGCGAGCCCACGAGTTCAAA
GCTTTTTCTTTCCAACAATCGATGTCGTTATTGGTTCAGCTTCGTTGCTA
CATGTAACAGCAGTGACTATGGAAAGAGGCATAGCTGTATCAATGCCTTT
GAGATATCCAAGGTACCTTAATGAACGAACAGCGAATCGTACCATTGTTG
GAATCTGGATTTATTGTTTGGTGCTCCTCGTCATGGGTTTATTACGAATA
CCGATTGTCAGCGACGTCTACAATTCAGTGTTTTTCTTCATCGCTGCTAC
ATTGAGCTTTTTCATCCCTTGTATATTAGTGCTTGTCTCTTACGGTTTTA
TACTGGTATCCGCGTTAAAGAATATGAAAATGGAAAAGAAAATCAGCAAA
GTTATCGTTGTCATATCTATGNACATGTAACAGCAGTAACTATGGAAAGA
GGCATAGCTGTATCAATGCCTTTGAGATATCCAAGGTACCTTAATGATCG
GACAGCAAACCGTACTATTATTGGAATCTGGGTTTATTGTTTGGTGCTCC
TCGTAATGGGTTTATTACGGATACCGGTTGTCAGCGACGTCTACAATTCA
GTGTTTTTCTTCATCGCTGCTACATTGAGCTTTTTCATCCCTTGTATATT
AGTACTTGTCTCCTATGGTTTTATTCTGGTATCAGCGTTAAAGAATATGA
AAATGGAAAAGAAAATCAGCAAAGTTATTGTCGTTATATCCACAATGGAT
CAAGAGAATCTGGAAAAAGTTGCATCAATGAGACCAGCAAGGTTTCGAGA
AATCAAGATCGCTTTTAACGTGGCAATAATGACAGTTCCTTTTGTTTGCG
GATGGGGTTATTTCATGACGTGTAATACTTATGAAATTGTAGCTGGCAAG
GATATTACCGGTTTTCAAAATTGGTTAATCCCTTTCGTACCGTTCGTAAT
TTCATGTTTAAATCCATTGACTTATTTAATGTTCACTCGATCCTTGAGGA
AGAGTTCATTAATGCTACTTTCAAGATCAAAATTATGTAAAAAACTGACG
CAGTCTTTTATTAGACGCGAGAGTGAATTAACGAGTATGTCTTTCGTGAT
AAACGATCGGTCAAGCAACAGTATGGTCGAGACAGCTTCGAGAAGACATT
CTGAAAATCTATTAGACGGTGATGGCAAAAAGGAGACCACGAATGAATCT
CCAGAGAAACAAACTTTAATTGAACGTGAAGATTTAGATAAAGGCGTTAA
TGTATAATGCACGTAGATTTTATTTCAATTCCAATAATTCTAATATACTA
CTCTCTGATTCTGAAGGGTAAACTTTGGTGAGTTGAAAAACTTGTAGGGC
GTGAGATTAAAATCTTACGAATTTACTTCTATTATTACCTCTAAGAATTA
TAGTCATTACTTTATCTACGATCGCGAGTAATTTTCTTTTTAACTTCCTT
AAAATATATTGACAAATTGAAATGCAGAGAGGAAATTCTCCATATTGTTC
TGTTTTTCGACATACCGGCAGGTATATTCACCTTGCATCGTTCGTTTTTA
TTGTAACCTACATATCTAAAATGTATATATTTAGAAGTTAATATTTTTAA
GTTCAAAATCGAAAATTTGTTTTCATTTGTATTTTTTTGTTGCATTTCGT
GTGACAATTGTATATAATACTTGTATAGGTACTAAAACATATTTAATCTT
CTACGTTTATCCATAAAAAGAGGAATATACTTAAAATGGTTTCCATCATT
TTTTTTCCAGTTTCGAGTGTTAAGCCTGTTAAAACACCCATATTGTTTTT
GAATCAATCAACTCGTTTTTCGACGAGTATTTAGTTTCCAGAAAACGAGA
TACATAAGTAAGTTTGCGACTACAGTCGAAGCCCAACCGAAGGTATTTCA
GTGCTCCATTCCTTTCTCTGGATTTCTCTACTTACCCTCGATTCGCCTCT
GTAGTTGCTGACAATCAAGCAGAGAGGCACCAGGTACCATTTCGAGAATC
TTTGGTATGACCCGACTTGGGATCAAACCAACAACCTCGCAACGTAAATT
AATTATAGTAAAGGGAAATTTGTAAAATATCTCAACTTTTTAGCGGGTTT
AAAATTTTATAAGAATAATATTAAAGCTTTTTGATAAGGAACAAGAAGCC
GGAGCGGCGTGAAGGTCCAGCTGACGTGGCAATAACCGAATGTCGTTCGT
ACCGGGTTCCTTAAGTGACGCAAAAAACTTTCCTTCCCATCCTCCACTCT
GAGCTTCTATTCTTTGACACTTTCTTTGTATTGCTAAGTTTTTAAATTTT
TGAAGCATTTCCCGAAATTTCGAAACTTTTGCCGATGGTCGGATTCGAAC
ACACTATATACAAAGCACCTATGATTAGAACGCCAGCGCCTTAACCACTC
GGCCATCGAGTCACAACTGTATTCAGGAGTTCAAATTTCCTTATAAACAT
GGTATTTACTCCAAACTCTACCCGGGGGCTAAAACCCTAACCAGGGGTTA
ACTCCCATCCCCAACCCTAGCCCTAACCCTACCTGAAACAACCCTTTAAT
AATCTAACCGGGAAATTTGACTCTACTACCAATTCATTCCAAAACAAAAA
ATTCTAGATCGGTGGTTGGTTTAGCCTGGACTTGTTAATTTATTGCGCGC
ACAGGCCCCGACAAAGACAAAATCTTTTCAATCAGTTGCTTTTTAAAGGT
CCATTCTGCTGCGCGCTGGACCAAAAATCTGCAAAGTTTACATCAAACTG
CTCAAAATTATCTTTCCAACGAAATACTACTTTTAGTTATGTTTTTTTCC
CTGTGATATTTAAAATAGTGCGTAGTGTCAAATTTTTTGGAACAGACTTT
ACAAACAACCTATCAAAAATCGCCAACGTTCTCGTTTACTAATTTTGCAG
ATACTCAGATTGTTCAGACGTTACGATTCCGTTTCGCCGTCTTTGTTTGA
AGCCATATTCTATTGCTTACATTCAAGTTTTACGTCACTTCTAACTAATA
GAATGGCTTCATTTCGTTTCGTAGCGAAACCACTGACCTTTATATACCCT
GGACAAAGCTATATTATATCCGCCATCTTTGTTTGGAGTTTTTTAGAATT
GGTACCCGAGAAGAAGCCATTACAATGTTAAAAATTAACGTCTAACGCGG
CGCTTCATCATAAAAAGTATTCGAGGAAAAGTAGAGCTAGCGCTCTCGAT
TCATTTTCACCGCTATTGAGAAGTGCTACCATTAGGGTACCACTTACAAA
AAACTCCGATCAAAGATTTTGCTTGGCCAGGATTGAGAAAATTCGTCCAG
GGTATATAAAAGTCAGTGAGCGTAACAGAACCGTCACGTGCGAGCATGGT
TTCAGAAATACCCATAACTCTCTTTCCGATTAGAAAATAACACTGCGATT
TTTAGAATCTGGTCTGATTTTTTTGGCTCAAAGCAATAGCATTAAAAGAT
GCAATCAATAAATACCGCGAACACTACAGATTAGCTTTCTCTAAAATTTA
ACCTGTGGGAAGAGCTACGGTAAGACTTTTACGTCTCAATCACACTCGAA
AAATTAACCAGCGGGGGGGGGGGGGATTTTTATTAGGCACTTGTAGTTTA
TTTGACTCGTAATAGTAGAGAGGTCTGCATGCTATATTCTGAGATGTTAC
TCTGTACTATGCTTTTTTGCCCTTGTTTCTTGTGATTCGATTGACTGGCC
TTCATCCAAGATCTGGGATGGCAACCATGGTCACTCTTGTTCTGGTTCTC
GCTGATTAAAATCGCAAAATGTCGTTACATTATATAAGATTCATACAATC
TGATACTCACGGTACCCACTGCCTTTAATTTGAATTTTCAACATTTCCTA
TGTATAAAATATAAATTTTTCCCTGTTATTCGGGATTCAAGGTCGTTATT
CGAAAATCATTATGAAGATTAAGATTAAGAGAAATTGAGTTGACTTCACA
TAAAGACGAACAGTGAATAATATTGAGATTTCAAAGAGATGTGGATCTTC
AACTTTACATTACTTTGCAAACTTCAGAAATTACTGAAATTACTCCAAAA
CAAAAACGAATAGAGTCTGACAGATGTGGACTTTTAACAACTCTTCTGCC
ACAACTGATTCTAAAGCTTCAGTTGAACTTGTAATCAACATCGAAAAATC
GAATGTGTCACCATAAACCTTACTGTTAAGCAACATCTTGTGGTCAGTTC
TAAGGCAGCTGAAAAGAGTCGATAACTTCTGGTACTTGGGATCCATGGTT
ACAAATAGTCACAAGGACTTCCAAAGTAGGTCTGTGTTCCAAAAATTGGA
AATGATTTTGCGCTAAAGCTCCGTCTTATTTTACAGTTGTGAAATTTGGA
CTATCTACGAAGAAATGACTTCAAAGATTAACACATTTCATACAAAAATG
AATTATACGCCCCTGTCTCACAGCCCCGGTGGAACTTTTTTCCTCAGCGG
GGATAAAAACTCTTATCAAAATCTCAATGGGGAGAGAAATTCTATTGTTT
CAAGGTTAAAAAATCCAGTGGGGATGGTTTTGGAGTGCAATTTTTAAACT
TTGAATTTCTAATGGGGATGAAATCAAAATTAATATCCCAATGGGGCTGG
AATTTCAAGGTATTTTCCCACCGGGGACAAATTTCGGCCAAATTTCCCAG
TGGGGCTTGGGTCCCAGTGGGTCTGTGACACAGGGGTGTAATTATGTTTG
GAATCAAAAGCTTGATAGAACTCCAAATTAACAAATCTTTGAAGCTACAT
CTCATCTCACATGATAACTGTCAGATTGCATCAACTGAATGTCTCACTGG
GCAAAAATGAGATTACAAAAATATACGCGCTCTATCTTCACGGAAAATGG
AGAAGCTGTCAATCTTGATTTAGATTATAAAATAAAACTGATATTTCCGT
GGCTCAAGACTGAACTGACTCATCTGCTCTACAGTCGAAAGCCGACGACG
AAAGAAAAAATAATATCGTTTAGGGCGGAATACAGAACTTTTAAACCTTC
TGTTTCGTAAAACTTCAACCTTTCGAAAGATTTGATTTTTCATTTTGATT
TGATTTCAAAAAGTCCACCTTTTGACGGGAAAAGCCTTCCATAGTCCAAA
AAGAAGATAACTGAGACTCGGCCCTCGTCCAAGACCCCCACCCCTACCCT
CAGCATCAGCATCAGCCACCGAAAATCGATAAAATCGTAATCTATTATTT
TTTTTACACGAACCAACCAAACTTGAAAATTTAGAAAATCGATTGGCTCG
TCTCGTCTCGTCTCGTCTCGTCTTGACACCAATATTTTGTGTAAACTATG
AGTAGCGAGAGTAGTTAACAAAATAAAAAAAATATCTGGCATATCTGTTA
GAAAAATGAGTATTCAATCAGCTTCTTAGCGTCAATGCCTCTGATCCCCC
ACCCCCTTGCGTCGATTTGACGTTAGTCGTTGGAAACATCGATATGTGAG
TGGCCCCTAAGCCGAGCAGAGCGGGTGAGTCAGTTCAGCCTTGAACCACA
GAAATATCAGTTGGGCCGATTTATTTTATAATCTAAATCAAGATCCGTGG
TGTACAAACGAATTCCTTCTTTTATCGAACTATACCAACCTGGAATAAAT
TGCCAAAAGATGTCGCTGAGGCAAAGACAGTCAAAGTCTTCAAAGAAAGA
CTCAACACTGCATGGAGTAAACATCCGAAAAGATTCAACACAAGACAATT
GTAAAATACGTATAATCGCGATCAGTTCCAGAGGCCCTCGTGCGTCTAGA
ACTTTTTTACATTATAATAATAATAAAGATTGACAGCTTCTCCATTTTCC
GTGAAGATAGAGCACACAGATTTTTTGTCATCTCATTGTTGTCCAATGAC
AAGTTGTGACCAAGAAACTTCAGTTGATTCTGGTTGGTTCAATCTAACAG
TTATCATTGGAGATGTTTTAGATCTTTTAATTTGGAACTCTATCAAACTT
TTGATTCCAAACATATTTCTTCGTAGATGGTCCAAATTTCACAACTGTAA
AATAGGAAGGAGCTTTAGCGTAAAATCTTTTCAAGTTTACTGAACGCAAA
CCTACTTTGGAAGTCTTTGTGACTATTTGCAACCATGGATCCGCAAGTAC
CAGAAATTGTAAACTCTTTTCAGCTGCTTTAGAACTAACCATAAGATGTT
GCTTAACAGTACAGTTCATGGTGACACATTCGATTTATCGGTGTTGATTA
CGAGTTCAACTGAAGCTGTAGAATCAGTTGTGTAGGAGAGTTAATTCCAT
TTCCTGGTATTCCCAAATCTTTGGGAGCACTCAAGACCCCAATTTGTCAG
CTTGCACCCTTTTTGGTTTGGAGTAATTTTAGTCATTTCTGAAGTCTACA
GAGTAATCTAAAGGCCGGTGTCCACTTGCACGCGCTGCGATCGCACTTTT
TCGAACAAAGCTTCCACGCTTTTGGTCAAAAGAAAAATAAAGCAATTCCA
TTGGCGCGATCTGACGTAACGGTTGAAAGCCTTTGCGGCCCGTTTTACAC
AAGGTCCTTTTACATCGACTTTTACACTACGTCGTCGCGTAAGAGCACTG
TATCCATCAGAAAAAGATCCTTTTGACATCACGGCACTTAACAAGTTATG
AAGGTGGCTCTTCAGATGGTTAATTTTCAAGCACCTTCAGAGGTTTATAG
TGAATAAGAAAATCATGACTATCTGTTATCAGCTTACTTTCATGTTGATG
ATTTTGCTTTTATGTTGATGATTTTGCTTTTACATTAATGATTTTGCTTT
CATGTTTATGATTTTGCTTTTATGTTGATGATTTTGTTTTTACATTGATG
ATTTTGTTTTTATGTTAATATTTTTGCTTTCACGTTGAATGAGAGAAGAG
AAGAGAAGCAGACCCTCCGATATCATCGGACCGGGCCCTATCCCGGGATA
GTTTCCTACCCCTTGATAGGGAAATCACAGCGCTTACCAGACATTATACT
ATGTGCTTGCGACACATTAGAGCCGTGCTGTATTGATGATGATACTCGCA
CAGTACGTGAGAACCTTGCGTTCTCGCAGGTACTGAACATATTAGTACCA
ACATCACACCACATTCAATGCCCGGCATAGCTCCCCATACTCTTGTATCA
GAGTGATGGTACCCTATTCCCCTCACATGGTATAGGCTGACTCGGGCCAA
GGTACATTCACTTGCTAAGTGAACCGTAGCACCGAGTGGGAATCGAACCC
TGACCTTCAGCACGAAAGTAAAAAACGATGACCACTCACTACTAGGCGTT
GAATATTTTGAATATTTTGTGTTTTATGCTGAATATTTTATGCCTTTATG
TTGATGAATTTGCATTTATGCTCATAATTTTGTTTTTATTCTGATGATTT
TGTTATTATGTTGTTTCTCCAAGGGGGAGCACTTAAGGCAACGGACTCAT
TCGGTATAGTCACTATGTTGTCTAAACTAACACAACCTGGGTCTGTTCTT
GGTGATCAGTCCCTGCAATGACGTACTTCCTTTTTTGAGAAACACAAAAT
TAATCGGCTACCTTGAGAAATTATTCAAACGATTTTTCAATTTGATTCCG
TGTCAACGATGGAACTCCTTTTTATTTATTTGTTTATCATGCAATTTAGA
AATTGCAAAACGAAGAACCCCTCCCCTATAGAAGGAACAAAGAAGGACCT
ATATATCCAATATTTGCCTTCCTTTCTAATTATTTGTTGGCTCGATCCAA
ATGACAAAAGGTATGGCTATCATTGAGCTAGCAGTAACAATATTTTAAAG
AGGTCTCTAATAGTCACAAAGTTATGATAAATGCCTCACATTCTAATCAA
ATTAGATCTAATTACAAGCTGATCATTGAAAAATATTTTTGGTACTTTTC
TCATCTAGTTGTCAGATGCAATTTGTTTTTTGTCAAGTGAACAATGTGCT
GATGATGATCGTTATGATGCTGATGAGGAATAAATTAAAGTTTGCTGTCA
AAGTTTAATTTGTGTGTTTGTTTGTTTGTTTACTTAAAAATGGGAAATTT
CTTTCAACCATACACGATAACAATAGAACTGAAAAATACTTTTTGCAATT
ATCTGTATAATAGAGAACTTTTATCAGGGGATTCTCCTCCGCTTAAAAGT
CTTCCTAATTGATTTAAGGCGTGATGCCTTGGTATTAAGATATTTCCTCT
ATCTACATGTTTCTTCGTAAATCTTTATCGCTTGATTGACTATAATGATG
TGTAAAGTAATTCTAACTGTTCTTTTTAGATGATGAGATAAGTTTCAATG
CTACTGATTCTGTTAGGCAAAAAAACTAGAGTGACCATAATCAACGTGGC
GAAGTAAAAAGCGAATAAAGATGAATGTTACATCTTGCAATGATATTATG
CAGATGATGCAGCCGACAGGAAGTGTTTCTGAGCTAATCTATGTTATTTT
GCCGAACATTTGTGGTATAATTGAAAGTATCAATGCATCAATGGTGACAT
TTGAAGAGAGAATTTTTTACGATCATTGCTGTGACCCGATACCGTTCATG
ATCCTGAACAAGACTGTGAACCCTAACAATGAGACTCATCCTGATATACT
CATTAGGGATGTTTGCAATTATATGAAAGATAATAGAAGCCCACAGGAAG
AGCAATTATACAGAGATGTTTGTTTGTCAGCTAATCATCACGCAGCAGGT
GTTTTGAATCCAGCCTGGCGCTTACTTACATTCATTATCCTCTCTGTGTT
GACACCGATCGGTTTCTTTGCTAACGTTTTGATTCTAATGACCGTATACA
AAATCAAACATCTTCGCAATACCACTGGTTACTTCATTTGCAATCTAGCA
GTTTCTGATCTTCTGGTTATCTTTCAGATGTTACTATTTGTGACCATGTA
TACGTCTGGTGCAATGTCAGATGCAAGTCCCCGAGTTCAAAGCTTCTTCT
TTCCAACAATCGATGTCGTTATTGGTTCAGCGTCTTTGCTACATGTAACA
GCAGTAACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001953-exon-sc0000012-1575043694:852064..852420 | TCONS_00001953-exon-sc0000012-1575043694:852064..852420 | Clytia hemisphaerica | exon |
| TCONS_00001953-exon-sc0000012-1575043694:842710..843222 | TCONS_00001953-exon-sc0000012-1575043694:842710..843222 | Clytia hemisphaerica | exon |
| TCONS_00001953-exon-sc0000012-1510915933:852064..852420 | TCONS_00001953-exon-sc0000012-1510915933:852064..852420 | Clytia hemisphaerica | exon |
| TCONS_00001953-exon-sc0000012-1510915933:842710..843222 | TCONS_00001953-exon-sc0000012-1510915933:842710..843222 | Clytia hemisphaerica | exon |
| TCONS_00001953-exon-sc0000012-1491911889:852064..852420 | TCONS_00001953-exon-sc0000012-1491911889:852064..852420 | Clytia hemisphaerica | exon |
| TCONS_00001953-exon-sc0000012-1491911889:842710..843222 | TCONS_00001953-exon-sc0000012-1491911889:842710..843222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:842710..852420 - |
Blast
The following BLAST results are available for this feature:
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