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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001940 ID=TCONS_00001940|Name=TCONS_00001940|organism=Clytia hemisphaerica|type=transcript|length=1313bp
ctTACATTACGTTATGAAAATCATGAATTCATTGTTATGCTTGCTATGTT
ATCTAATATAGCATTtaacatttcaataaaaaccttAGTTTTCTATTAAG
CTAAACAAGTTGTGAATTAAATTTTACTGGGAGCTTACCCCTTCGCTACA
CAAGCAAGGAAAATGAGGATGAGCGCTCTGGTTTTCCATCACTGGATCTA
AATTTTGCAGCTGGGTTGGAACAAATTTCTGAACTGAATAAAATCTCAAC
AACAATAACTTTCGTATTGGGTGGAGTTGAGGAGACTTGCAAATGTTTAC
CGTTACATCCACAAACGGCTTTTTGCCAAGCAAATTTTGTCATGAAAGGA
ACAATCATATCGGATCGTCACGAGAAGTTGATGGAAACAGAAATTACAAA
GTCGATGAAAATGCCACCTTTACAGATTGTCTATTATGATGTTTTGGTTA
GCAGAGTTCACAAAGGATTCGAGAAAATATCTGAAGTTGTTGGTATTAAA
GATTCATTCTTAATGAAAATTCCAGTCTATTTATCACAAAGCGGTGCTGT
TTGTAAGTTCAAtcttaaaaaaggtaaaaaatatttgattatgGGTCGCA
TCGTTGCTAAACAACTACAAATTACACATTGCAGTTTTGTGAAAGAACTT
CACACCTTATCTAAGACAGTCAAACATGGTATTAAAGGGCACTATGACTG
CAAATGTCCAGTGACAATGTGTGTCGGTGGTTACTGTGATCAAGACCATG
GATGCAAATGGAATGTCGCTTGGGATCAACCAGTGGATGAATGTATCATA
AAACATAAATCTTGTCATCAAATACCAGACAAAAAGAATCCATCAGAAAT
TCATTGTCATTGGACTAAAAACTCTTTGAGATACAATAAATGCAATTCGA
AAAAAAGACTTATAGCCGAGTTGAAAATGAGGAAAGCTGAAAGATTactt
ttaaagaactttcaattataattttttttctaccaAGGTATGAATGCATA
TACACAATttgtaaagatatttttatttgcttgtaaaattatttcattct
gacaaattattttatttccttttaattttttcccaaaattttcttttgta
tatATGATTCTCCTTATTTTTCGGTATTGTAAATAATATATAGTAACTGT
ATGATGAGAATCTAGACAcatgacatttttcaaaacattacgTATTTGAA
AGAGATTCCTTTGCACTttcccaaaccacacccatgtTATACAAACCTGG
TAGTTTCCCTTTCTGTGGCAAATATATTTGAAAGATTTACATGGTTATAA
TAAATGAATACAC Run BLAST on NCBI protein sequence of TCONS_00001940-protein >TCONS_00001940-protein ID=TCONS_00001940-protein|Name=TCONS_00001940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MKGTIISDRHEKLMETEITKSMKMPPLQIVYYDVLVSRVHKGFEKISEVV
GIKDSFLMKIPVYLSQSGAVCKFNLKKGKKYLIMGRIVAKQLQITHCSFV
KELHTLSKTVKHGIKGHYDCKCPVTMCVGGYCDQDHGCKWNVAWDQPVDE
CIIKHKSCHQIPDKKNPSEIHCHWTKNSLRYNKCNSKKRLIAELKMRKAE
RLLLKNFQL Run BLAST on NCBI transcript from alignment at sc0000012:535577..541447- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001940 ID=TCONS_00001940|Name=TCONS_00001940|organism=Clytia hemisphaerica|type=transcript|length=5871bp|location=Sequence derived from alignment at sc0000012:535577..541447- (Clytia hemisphaerica)
CTTACATTACGTTATGAAAATCATGAATTCATTGTTATGCTTGCTATGTT
ATCTAATATAGCATTTAACATTTCAATAAAAACCTTAGTTTTCTATTAAG
CTAAACAAGTTGTGAATTAAATTTTACTGGGAGCTTACCCCTTCGCTACA
CAAGCAAGGAAAATGAGGATGAGCGCTCTGGTTTTCCATCACTGGATCTA
AATTTTGCAGCTGGGTTGGAACAAATTTCTGAACTGAATAAAATCTCAAC
AACAATGTACGTACCTATTATACTGCTTTTGTTGGAGGGTTTATGCACAA
GTTAAATCACCTTGGGGAGGGGGCGGTGCAGTGATAGAAATTCTGAAAAT
GATGTTATTCCTAGGAGAAAGATGGTAGAGTGAGATGCGGAAAAAACAAA
GCTTAGAGAAGTTACGACCCGTGGAATACTACCGGGTGCGCCACAAAAAA
GTTTTTCTCTTTAAAGTGAATTTTCTCGAAGTCTAAAAATTTAGAAATAA
CCAATCCTTTTCCATTGGAATGAAGAAAGATAAACTTAAATTTTGATAGG
TCATTTATAAAATTTGGTTCATTAGATCAAAAGTTATGCTCAATTGAATA
AAAAAGTTACTTTCAAAAAGTGCTCGAAAACGTTAAAAATTTACCTATCA
AAATTTTTATTTTTAAAATTTGGCAATTGCAATAGCCTTTACATGATTAA
GAGCATTTTTGAGTAACTTAACACATAAATTTTGAAATTGAAGGGTTGAA
TAGATTTTAAATCTTCATCAAAATCAATTTAATTTATTTTTACCGAAATT
TTCCTCAGATTTTTTTATTCTAGACTGGATAAAGTCCATGTAAGGCTGGA
TCTACCTCGAAACCCATATTTCATGTATTTTTATGAATTTTATTAGATTT
TTTGGCCTTTTTCGACGAATTTTCTTCTTTTCATTGAGATTCAACCTTTC
TTTATATAACAAAAGGTCATTTAGACAACTAATTATCATTTTTAATGACT
GCAACGAGAGTACTGATGTATCATGTAATTATATACTGCTGTTTAAGGGC
TCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCT
GACTGATGTAACCAACAAAACTATGGCATGTTATACATTTTCTGTTAGAC
AAACTATTCCTGAATCTGAAAATTCAAAAATTACATTGAAAAAATGTGAT
GAAGAAGAAAATGAAGAACTTTTGAAGACTTTTGCGAGGAAGAGTACTTC
AACTTTGACGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAAATTTT
TCGCAGTAGATGGTTTATCTTTTACCGAACAATAAAAATTTTTGCGGAAA
ATTTTTGTAAATGCTTCTTTGTCTCAAAATCTTCAAAATAGTGGATTTTC
ATCAATTTTACATCTGGATTTTGCTTAAAAAAACAGTCATAACTTTTGAC
ACATCTTTTTAGAAAAATTTCCCGCAAAATCTAAAATAGTTCAATTCTTT
GCGGACAGTTTGAAAAAACTTCTAAACAAAAAGGTTAATTACCCATTAAA
ACTTAGCACTTTTTATAAAAGAAGGTGATGCAACATATTATTAACGTCTT
TTTAAAGTTCATAACGTCATTTTTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGCA
ATTCTTTGTTAAAAGTGTTAAAGAATCTAAAACATAACTTTCATGTTCAG
ATACTAAAATCAATTTTCCGACTATGGTCAGAGCCCTTAATTTGATAAGT
CGATTTTTAAAATTTTTGAGCCCTTTCCGAAAGTAACTTTTTTATTCAAT
TGAGCATAACCTTTGATCTAGTGAATCGAATTTAATAAATGACCCATCAA
AATTTAAGTTTATCTTTCTTCTTTCCAATGAAAAAGGATTGGTTATTTTT
AAAATTTTAGACTTTGAGAAAATCAGTTTCAAACTTTTTTGTGGCGCACC
CGGTACAATCCGTGCTGAAATATATTGGCAATTTTGGGTATTTTAACGTT
TTTCAGAATTTAAAGCTCGGGCAAGAATTGCAATTTCAGTACTTCCACTT
TGTTTCAGGGGATTTTTCGATTTGGGAGGGATGAAGTGGCTTCCAGGCTA
TGTTCTCAACCATATTGGAACATTTTTGAGATTTCAGATCCTGAGATCCT
ATGGTCACAAGCCGTAAGACTAATGTTAAAACTCGGAGTTAAAACTCTAC
TTTCTAACCGCGCTTAATAATCACTTGAGGTTTTAAAGTTTGAGGAAATT
CCCCTTTTGTGCAAAATATTTCGGCGCCGATTGTAGGGTTGGAAAATGAC
GGGTATGTTCCGAACCGGACCTAATAAAGACCTCATAAATTTTTTGAACA
TTCATAGTTTCTTACCCATTCAAAAAACCTAAAAATGGGAAAAGACTGTT
TTGGCTATTTGTTGTTCATGTAACAGAGAGACTAAAAAAATCAACCCTTA
AAGTCCGTACATAACAAGCACCTATTTTTACCTAAGGACCCCCCCGGAGT
TACGTACACCAAAGACTTTGCTCGATCACGAATGGATATTGATGAACTGA
CAGCAATCAAAGTTTATTTTACACTTACATAAATTCAGGTGCACTGTGAA
TTTGAAAACGAGGTAATCCTCTTAATGGGAAATTATTTTACAAGGACTGT
CTGATAAAATAATTATGTGCCACCTGGGTAATTCTCTTTACAGCTTTTAG
GTTAAGAAACTTTTAAACTCGATTCAAAAATAATTTGTGATAGTGAAAAA
GGTAGCCTTTGTAATCCCGAATCATTTTCACCTAGTTAAATCATTTTAAA
AACCAAGTTAAAGAAAAAACTGAGTTATGATGTATAATTTTTGAAAAATT
ATGTTGTTTTCATAAATCCTGGCAGGATTAATTTATTCTTAATTTTAATT
TTGTAACTCACTTTTATTTTTTTATGAAAATATGAAAATTTCGATCGACA
TAATGACTCATTTTGTTTGTAATTCGGCTTTTTTGAATCGGGTAAAAACA
GCTGAGGATTTCCGATTTTCTTCAACTTGAATTTTTAAATCAACTGAAGG
CACATTTATTTAGCTTTTTACGGTGAAAAGTCCATTCTGAAGGGAGTCTT
TGTCATAGAAATACGAAGCTTCAAGTACAACAAGGTCGAGATAAAAAAGT
TTGAGATTTTGATTGACAGCTTTCTTTTTTTGTCACTTTAATGAAATTTG
CCAATTTCATGGTCAACTTGTAACGAGCTTTTAAGTCTAATTTCCCATTA
ATGAAATGCTGGATGAATGTAATTTTTTTCAGCAGTGGAAAGAATACAAT
ATTTCTTTTACACTTCTTACGCTTTTAGATGATGAAAGTCTTGAGTTACC
TTTTTCTGGAAGAACTTAATTGATGTCCAATGTCAAACCCTTGTGTACTT
AACAAAAAAGAACAAAAAAGCTGTTTGAAGTAAATTATTAATCACAAAAA
GCTTAGTAGGTCTGTTTTAAGCTAACCTAAAAACTAAGCTGAATGGTTCA
GTACTTCTTTCAAAAAATTGCCTTATTTTTCAGCATACACGTTTTTTTAT
AAGATCATCTAAAATTTTTGAAGCCTTCGGACGAGGGGCAAATCACTAAA
ATAAATCTCGTACACAATTTTATAAATCAAAAATAAATCAATAAATCAAA
AATAAATCATGAATAAATCATAAATAAATAAAAAATAAATAAAACATTTT
TCGAAAAAAAATTGACTTTTCAACTTTTTTTAATTTTTTGACAATGATTT
TGATTATCAGTTCGTTATAATTTGAAAAAAAAAATCCATAAAATTACTCC
TATTAATAAATTAGAGATGAATCAAAAATAATTCAAAAAAAAATCATAAA
TAAATCATAAATCAAAAATAAATCAAAAATAAATCATAAATAAAAGATAA
ATCAGAAATAAATCATAAATCAAAAATAAATCAAAAAAAAAATCATAAAT
AAAAAAAAAATCATAAATCTCGTACACCATTTTTCGAGTGATTTGCCCCT
CGCCTTCGGATATTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTCTT
AACCTGTTCTTAATACTTTGGCTGGTAAAGCCTTATGTTCTTATATAGTT
TGTTCTTATAAAAAACGTGTACTTTATTGTGATACACCCTATACAACAAA
CATATTTCTAGGAAGTTTGCTTTTTAAAGGAGGGTGATAGAAGGATGGAG
GGGGAGAGTAGAATGTCAACATTTTTATTGAAGTCACGTTACGTCAATTA
CTCAAGTATATAACAATGATTCTGATGATTTGACAGGCATGTAAATTAGT
ATAAATAGACCGTCATTTAGATTGAAACAAGTCAGTTTAGTTTACCCATT
CAAACAGTTTGTCGGCGGTAAAGAAAGATTAAAAGGATATTGTTGCGTTG
GAATTGTCCGCAAAGCTATAGTTTGACTTATACAGGAAAAATGATTCTCA
CTTCAGTTCTGTTACTTTTATCGTTCAGAACTTTCGTATTGGGTGGAGTT
GAGGAGACTTGCAAATGTTTACCGTTACATCCACAAACGGCTTTTTGCCA
AGCAAATTTTGGTAAGCTTTCTTGATTTTCATGTTTTGTTTTTGTAATCT
GAAACTCGAAGGTGTGAAACCTGACACTTAAGTCTCTTAAGGTACGCACA
TACCCAGCCTTCCTTTCCCAGTCTTCCTTAACCTTTTGACCAACAAAACT
TTATAACCGATAAACAAAGGTCTTATGATTTTTCTTTCCTATTCCAGTCA
TGAAAGGAACAATCATATCGGATCGTCACGAGAAGTTGATGGAAACAGAA
ATTACAAAGTCGATGAAAATGCCACCTTTACAGATTGTCTATTATGATGT
TTTGGTTAGCAGAGTTCACAAAGGATTCGAGAAAATATCTGAAGTTGTTG
GTATTAAAGATTCATTCTTAATGAAAATTCCAGTCTATTTATCACAAAGC
GGTGCTGTTTGTAAGTTCAATCTTAAAAAAGGTAAAAAATATTTGATTAT
GGGTCGCATCGTTGCTAAACAACTACAAATTACACATTGCAGTTTTGTGA
AAGAACTTCACACCTTATCTAAGACAGTCAAACATGGTATTAAAGGGCAC
TATGACTGCAAATGTCCAGTGACAATGTGTGTCGGTGGTTACTGTGATCA
AGACCATGGATGCAAATGGAATGTCGCTTGGGATCAACCAGTGGATGAAT
GTATCATAAAACATAAATCTTGTCATCAAATACCAGACAAAAAGAATCCA
TCAGAAATTCATTGTCATTGGACTAAAAACTCTTTGAGATACAATAAATG
CAATTCGAAAAAAAGACTTATAGCCGAGTTGAAAATGAGGAAAGCTGAAA
GATTACTTTTAAAGAACTTTCAATTATAATTTTTTTTCTACCAAGGTATG
AATGCATATACACAATTTGTAAAGATATTTTTATTTGCTTGTAAAATTAT
TTCATTCTGACAAATTATTTTATTTCCTTTTAATTTTTTCCCAAAATTTT
CTTTTGTATATATGATTCTCCTTATTTTTCGGTATTGTAAATAATATATA
GTAACTGTATGATGAGAATCTAGACACATGACATTTTTCAAAACATTACG
TATTTGAAAGAGATTCCTTTGCACTTTCCCAAACCACACCCATGTTATAC
AAACCTGGTAGTTTCCCTTTCTGTGGCAAATATATTTGAAAGATTTACAT
GGTTATAATAAATGAATACAC Coding sequence (CDS) from alignment at sc0000012:535577..541447- >TCONS_00001940 ID=TCONS_00001940|Name=TCONS_00001940|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000012:535577..541447- (Clytia hemisphaerica)
ATGAAAGGAACAATCATATCGGATCGTCACGAGAAGTTGATGGAAACAGA
AATTACAAAGTCGATGAAAATGCCACCTTTACAGATTGTCTATTATGATG
TTTTGGTTAGCAGAGTTCACAAAGGATTCGAGAAAATATCTGAAGTTGTT
GGTATTAAAGATTCATTCTTAATGAAAATTCCAGTCTATTTATCACAAAG
CGGTGCTGTTTGTAAGTTCAATCTTAAAAAAGGTAAAAAATATTTGATTA
TGGGTCGCATCGTTGCTAAACAACTACAAATTACACATTGCAGTTTTGTG
AAAGAACTTCACACCTTATCTAAGACAGTCAAACATGGTATTAAAGGGCA
CTATGACTGCAAATGTCCAGTGACAATGTGTGTCGGTGGTTACTGTGATC
AAGACCATGGATGCAAATGGAATGTCGCTTGGGATCAACCAGTGGATGAA
TGTATCATAAAACATAAATCTTGTCATCAAATACCAGACAAAAAGAATCC
ATCAGAAATTCATTGTCATTGGACTAAAAACTCTTTGAGATACAATAAAT
GCAATTCGAAAAAAAGACTTATAGCCGAGTTGAAAATGAGGAAAGCTGAA
AGATTACTTTTAAAGAACTTTCAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00001940-exon-sc0000012-1575043694:541192..541447 | TCONS_00001940-exon-sc0000012-1575043694:541192..541447 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1575043694:536737..536819 | TCONS_00001940-exon-sc0000012-1575043694:536737..536819 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1575043694:535577..536550 | TCONS_00001940-exon-sc0000012-1575043694:535577..536550 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1510915933:541192..541447 | TCONS_00001940-exon-sc0000012-1510915933:541192..541447 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1510915933:536737..536819 | TCONS_00001940-exon-sc0000012-1510915933:536737..536819 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1510915933:535577..536550 | TCONS_00001940-exon-sc0000012-1510915933:535577..536550 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1491911889:541192..541447 | TCONS_00001940-exon-sc0000012-1491911889:541192..541447 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1491911889:536737..536819 | TCONS_00001940-exon-sc0000012-1491911889:536737..536819 | Clytia hemisphaerica | exon |
| TCONS_00001940-exon-sc0000012-1491911889:535577..536550 | TCONS_00001940-exon-sc0000012-1491911889:535577..536550 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:535577..541447 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008191 | metalloendopeptidase inhibitor activity |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008191 |
metalloendopeptidase inhibitor activity |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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