TCONS_00001938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001938
Unique NameTCONS_00001938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001938 ID=TCONS_00001938|Name=TCONS_00001938|organism=Clytia hemisphaerica|type=transcript|length=1335bp
GGGGAGAGTAGAATGTCAACATTTTTATTGAAGTCACGTTACGTCAATTA
CTCAAGTATATAACAATGATTCTGATGATTTGACAGGCATGTAAATTAGT
ATAAATAGACCGTCATTTAGATTGAAACAAGTCAGTTTAGTTTACCCATT
CAAACAGTTTGTCGGCGGTAAAGAAAGATTAAAAGGATATTGTTGCGTTG
GAATTGTCCGCAAAGCTATAGTTTGACTTATACAGGAAAAATGATTCTCA
CTTCAGTTCTGTTACTTTTATCGTTCAGAACTTTCGTATTGGGTGGAGTT
GAGGAGACTTGCAAATGTTTACCGTTACATCCACAAACGGCTTTTTGCCA
AGCAAATTTTGTCATGAAAGGAACAATCATATCGGATCGTCACGAGAAGT
TGATGGAAACAGAAATTACAAAGTCGATGAAAATGCCACCTTTACAGATT
GTCTATTATGATGTTTTGGTTAGCAGAGTTCACAAAGGATTCGAGAAAAT
ATCTGAAGTTGTTGGTATTAAAGATTCATTCTTAATGAAAATTCCAGTCT
ATTTATCACAAAGCGGTGCTGTTTGTAAGTTCAAtcttaaaaaaggtaaa
aaatatttgattatgGGTCGCATCGTTGCTAAACAACTACAAATTACACA
TTGCAGTTTTGTGAAAGAACTTCACACCTTATCTAAGACAGTCAAACATG
GTATTAAAGGGCACTATGACTGCAAATGTCCAGTGACAATGTGTGTCGGT
GGTTACTGTGATCAAGACCATGGATGCAAATGGAATGTCGCTTGGGATCA
ACCAGTGGATGAATGTATCATAAAACATAAATCTTGTCATCAAATACCAG
ACAAAAAGAATCCATCAGAAATTCATTGTCATTGGACTAAAAACTCTTTG
AGATACAATAAATGCAATTCGAAAAAAAGACTTATAGCCGAGTTGAAAAT
GAGGAAAGCTGAAAGATTacttttaaagaactttcaattataattttttt
tctaccaAGGTATGAATGCATATACACAATttgtaaagatatttttattt
gcttgtaaaattatttcattctgacaaattattttatttccttttaattt
tttcccaaaattttcttttgtatatATGATTCTCCTTATTTTTCGGTATT
GTAAATAATATATAGTAACTGTATGATGAGAATCTAGACAcatgacattt
ttcaaaacattacgTATTTGAAAGAGATTCCTTTGCACTttcccaaacca
cacccatgtTATACAAACCTGGTAGTTTCCCTTTCTGTGGCAAATATATT
TGAAAGATTTACATGGTTATAATAAATGAATACAC
Run BLAST on NCBI

transcript from alignment at sc0000012:535577..537097-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001938 ID=TCONS_00001938|Name=TCONS_00001938|organism=Clytia hemisphaerica|type=transcript|length=1521bp|location=Sequence derived from alignment at sc0000012:535577..537097- (Clytia hemisphaerica)
GGGGAGAGTAGAATGTCAACATTTTTATTGAAGTCACGTTACGTCAATTA
CTCAAGTATATAACAATGATTCTGATGATTTGACAGGCATGTAAATTAGT
ATAAATAGACCGTCATTTAGATTGAAACAAGTCAGTTTAGTTTACCCATT
CAAACAGTTTGTCGGCGGTAAAGAAAGATTAAAAGGATATTGTTGCGTTG
GAATTGTCCGCAAAGCTATAGTTTGACTTATACAGGAAAAATGATTCTCA
CTTCAGTTCTGTTACTTTTATCGTTCAGAACTTTCGTATTGGGTGGAGTT
GAGGAGACTTGCAAATGTTTACCGTTACATCCACAAACGGCTTTTTGCCA
AGCAAATTTTGGTAAGCTTTCTTGATTTTCATGTTTTGTTTTTGTAATCT
GAAACTCGAAGGTGTGAAACCTGACACTTAAGTCTCTTAAGGTACGCACA
TACCCAGCCTTCCTTTCCCAGTCTTCCTTAACCTTTTGACCAACAAAACT
TTATAACCGATAAACAAAGGTCTTATGATTTTTCTTTCCTATTCCAGTCA
TGAAAGGAACAATCATATCGGATCGTCACGAGAAGTTGATGGAAACAGAA
ATTACAAAGTCGATGAAAATGCCACCTTTACAGATTGTCTATTATGATGT
TTTGGTTAGCAGAGTTCACAAAGGATTCGAGAAAATATCTGAAGTTGTTG
GTATTAAAGATTCATTCTTAATGAAAATTCCAGTCTATTTATCACAAAGC
GGTGCTGTTTGTAAGTTCAATCTTAAAAAAGGTAAAAAATATTTGATTAT
GGGTCGCATCGTTGCTAAACAACTACAAATTACACATTGCAGTTTTGTGA
AAGAACTTCACACCTTATCTAAGACAGTCAAACATGGTATTAAAGGGCAC
TATGACTGCAAATGTCCAGTGACAATGTGTGTCGGTGGTTACTGTGATCA
AGACCATGGATGCAAATGGAATGTCGCTTGGGATCAACCAGTGGATGAAT
GTATCATAAAACATAAATCTTGTCATCAAATACCAGACAAAAAGAATCCA
TCAGAAATTCATTGTCATTGGACTAAAAACTCTTTGAGATACAATAAATG
CAATTCGAAAAAAAGACTTATAGCCGAGTTGAAAATGAGGAAAGCTGAAA
GATTACTTTTAAAGAACTTTCAATTATAATTTTTTTTCTACCAAGGTATG
AATGCATATACACAATTTGTAAAGATATTTTTATTTGCTTGTAAAATTAT
TTCATTCTGACAAATTATTTTATTTCCTTTTAATTTTTTCCCAAAATTTT
CTTTTGTATATATGATTCTCCTTATTTTTCGGTATTGTAAATAATATATA
GTAACTGTATGATGAGAATCTAGACACATGACATTTTTCAAAACATTACG
TATTTGAAAGAGATTCCTTTGCACTTTCCCAAACCACACCCATGTTATAC
AAACCTGGTAGTTTCCCTTTCTGTGGCAAATATATTTGAAAGATTTACAT
GGTTATAATAAATGAATACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001003XLOC_001003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001938-exon-sc0000012-1575043694:536737..537097TCONS_00001938-exon-sc0000012-1575043694:536737..537097Clytia hemisphaericaexon
TCONS_00001938-exon-sc0000012-1575043694:535577..536550TCONS_00001938-exon-sc0000012-1575043694:535577..536550Clytia hemisphaericaexon
TCONS_00001938-exon-sc0000012-1510915933:536737..537097TCONS_00001938-exon-sc0000012-1510915933:536737..537097Clytia hemisphaericaexon
TCONS_00001938-exon-sc0000012-1510915933:535577..536550TCONS_00001938-exon-sc0000012-1510915933:535577..536550Clytia hemisphaericaexon
TCONS_00001938-exon-sc0000012-1491911889:536737..537097TCONS_00001938-exon-sc0000012-1491911889:536737..537097Clytia hemisphaericaexon
TCONS_00001938-exon-sc0000012-1491911889:535577..536550TCONS_00001938-exon-sc0000012-1491911889:535577..536550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:535577..537097 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.250483	0.440132	2.08201	1.30947	4.41539	2.87231	1.51341	6.34732	1.93419	0.860344	14.3121	11.7949	12.9532	8.12158	31.6001	21.6657	13.7323	23.5526	0.682888	2.4292	46.8655	46.3503	27.029	36.0264	340.597	260.388	162.749	119.269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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