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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001938 ID=TCONS_00001938|Name=TCONS_00001938|organism=Clytia hemisphaerica|type=transcript|length=1335bp GGGGAGAGTAGAATGTCAACATTTTTATTGAAGTCACGTTACGTCAATTA CTCAAGTATATAACAATGATTCTGATGATTTGACAGGCATGTAAATTAGT ATAAATAGACCGTCATTTAGATTGAAACAAGTCAGTTTAGTTTACCCATT CAAACAGTTTGTCGGCGGTAAAGAAAGATTAAAAGGATATTGTTGCGTTG GAATTGTCCGCAAAGCTATAGTTTGACTTATACAGGAAAAATGATTCTCA CTTCAGTTCTGTTACTTTTATCGTTCAGAACTTTCGTATTGGGTGGAGTT GAGGAGACTTGCAAATGTTTACCGTTACATCCACAAACGGCTTTTTGCCA AGCAAATTTTGTCATGAAAGGAACAATCATATCGGATCGTCACGAGAAGT TGATGGAAACAGAAATTACAAAGTCGATGAAAATGCCACCTTTACAGATT GTCTATTATGATGTTTTGGTTAGCAGAGTTCACAAAGGATTCGAGAAAAT ATCTGAAGTTGTTGGTATTAAAGATTCATTCTTAATGAAAATTCCAGTCT ATTTATCACAAAGCGGTGCTGTTTGTAAGTTCAAtcttaaaaaaggtaaa aaatatttgattatgGGTCGCATCGTTGCTAAACAACTACAAATTACACA TTGCAGTTTTGTGAAAGAACTTCACACCTTATCTAAGACAGTCAAACATG GTATTAAAGGGCACTATGACTGCAAATGTCCAGTGACAATGTGTGTCGGT GGTTACTGTGATCAAGACCATGGATGCAAATGGAATGTCGCTTGGGATCA ACCAGTGGATGAATGTATCATAAAACATAAATCTTGTCATCAAATACCAG ACAAAAAGAATCCATCAGAAATTCATTGTCATTGGACTAAAAACTCTTTG AGATACAATAAATGCAATTCGAAAAAAAGACTTATAGCCGAGTTGAAAAT GAGGAAAGCTGAAAGATTacttttaaagaactttcaattataattttttt tctaccaAGGTATGAATGCATATACACAATttgtaaagatatttttattt gcttgtaaaattatttcattctgacaaattattttatttccttttaattt tttcccaaaattttcttttgtatatATGATTCTCCTTATTTTTCGGTATT GTAAATAATATATAGTAACTGTATGATGAGAATCTAGACAcatgacattt ttcaaaacattacgTATTTGAAAGAGATTCCTTTGCACTttcccaaacca cacccatgtTATACAAACCTGGTAGTTTCCCTTTCTGTGGCAAATATATT TGAAAGATTTACATGGTTATAATAAATGAATACAC Run BLAST on NCBI transcript from alignment at sc0000012:535577..537097- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001938 ID=TCONS_00001938|Name=TCONS_00001938|organism=Clytia hemisphaerica|type=transcript|length=1521bp|location=Sequence derived from alignment at sc0000012:535577..537097- (Clytia hemisphaerica) GGGGAGAGTAGAATGTCAACATTTTTATTGAAGTCACGTTACGTCAATTA
CTCAAGTATATAACAATGATTCTGATGATTTGACAGGCATGTAAATTAGT
ATAAATAGACCGTCATTTAGATTGAAACAAGTCAGTTTAGTTTACCCATT
CAAACAGTTTGTCGGCGGTAAAGAAAGATTAAAAGGATATTGTTGCGTTG
GAATTGTCCGCAAAGCTATAGTTTGACTTATACAGGAAAAATGATTCTCA
CTTCAGTTCTGTTACTTTTATCGTTCAGAACTTTCGTATTGGGTGGAGTT
GAGGAGACTTGCAAATGTTTACCGTTACATCCACAAACGGCTTTTTGCCA
AGCAAATTTTGGTAAGCTTTCTTGATTTTCATGTTTTGTTTTTGTAATCT
GAAACTCGAAGGTGTGAAACCTGACACTTAAGTCTCTTAAGGTACGCACA
TACCCAGCCTTCCTTTCCCAGTCTTCCTTAACCTTTTGACCAACAAAACT
TTATAACCGATAAACAAAGGTCTTATGATTTTTCTTTCCTATTCCAGTCA
TGAAAGGAACAATCATATCGGATCGTCACGAGAAGTTGATGGAAACAGAA
ATTACAAAGTCGATGAAAATGCCACCTTTACAGATTGTCTATTATGATGT
TTTGGTTAGCAGAGTTCACAAAGGATTCGAGAAAATATCTGAAGTTGTTG
GTATTAAAGATTCATTCTTAATGAAAATTCCAGTCTATTTATCACAAAGC
GGTGCTGTTTGTAAGTTCAATCTTAAAAAAGGTAAAAAATATTTGATTAT
GGGTCGCATCGTTGCTAAACAACTACAAATTACACATTGCAGTTTTGTGA
AAGAACTTCACACCTTATCTAAGACAGTCAAACATGGTATTAAAGGGCAC
TATGACTGCAAATGTCCAGTGACAATGTGTGTCGGTGGTTACTGTGATCA
AGACCATGGATGCAAATGGAATGTCGCTTGGGATCAACCAGTGGATGAAT
GTATCATAAAACATAAATCTTGTCATCAAATACCAGACAAAAAGAATCCA
TCAGAAATTCATTGTCATTGGACTAAAAACTCTTTGAGATACAATAAATG
CAATTCGAAAAAAAGACTTATAGCCGAGTTGAAAATGAGGAAAGCTGAAA
GATTACTTTTAAAGAACTTTCAATTATAATTTTTTTTCTACCAAGGTATG
AATGCATATACACAATTTGTAAAGATATTTTTATTTGCTTGTAAAATTAT
TTCATTCTGACAAATTATTTTATTTCCTTTTAATTTTTTCCCAAAATTTT
CTTTTGTATATATGATTCTCCTTATTTTTCGGTATTGTAAATAATATATA
GTAACTGTATGATGAGAATCTAGACACATGACATTTTTCAAAACATTACG
TATTTGAAAGAGATTCCTTTGCACTTTCCCAAACCACACCCATGTTATAC
AAACCTGGTAGTTTCCCTTTCTGTGGCAAATATATTTGAAAGATTTACAT
GGTTATAATAAATGAATACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001938-exon-sc0000012-1575043694:536737..537097 | TCONS_00001938-exon-sc0000012-1575043694:536737..537097 | Clytia hemisphaerica | exon |
TCONS_00001938-exon-sc0000012-1575043694:535577..536550 | TCONS_00001938-exon-sc0000012-1575043694:535577..536550 | Clytia hemisphaerica | exon |
TCONS_00001938-exon-sc0000012-1510915933:536737..537097 | TCONS_00001938-exon-sc0000012-1510915933:536737..537097 | Clytia hemisphaerica | exon |
TCONS_00001938-exon-sc0000012-1510915933:535577..536550 | TCONS_00001938-exon-sc0000012-1510915933:535577..536550 | Clytia hemisphaerica | exon |
TCONS_00001938-exon-sc0000012-1491911889:536737..537097 | TCONS_00001938-exon-sc0000012-1491911889:536737..537097 | Clytia hemisphaerica | exon |
TCONS_00001938-exon-sc0000012-1491911889:535577..536550 | TCONS_00001938-exon-sc0000012-1491911889:535577..536550 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000012 | supercontig | sc0000012:535577..537097 - |
Blast
The following BLAST results are available for this feature:
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