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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001935 ID=TCONS_00001935|Name=TCONS_00001935|organism=Clytia hemisphaerica|type=transcript|length=1612bp
ctcaTCGACCTCTAACGGATGGACGGATAACTCATTGTTTTCAAGCGCGT
TGGTTTTATTGTTCCCGAATCAATAGAATGATCACGTGATCATTGCATCA
GAAAAATTCGAGGTCTCGATAACCCAGTTGATGTAATTCTCCTGGATGTA
gggtagaaaaataaaaaacaacttgaAAATGAAGGAAACAGGGAAAGGAG
CTCATGAAGGAAAGAAGCTGAAAATTGTATGGAATTGTCAATGAATTTTC
AAGctttattatcaaattttgttCCAGTAAAAGAGAGTGCCATGATCATC
TTCAAACCCAGTTTCTAATACAATTATGAAAGGTTCTTCATCCTCGCAGC
ACACAGAGGTGTCCATCCTGTTTACACGTGTCCATACACACAGACGACAG
AATACGAGCTGGaacaaaagtaattttttatgaACGTAGAGTGTTGAGAT
GAAACATACAAGCTCTGTGGTGGTGGCGTATAGTGTGAAAATAATGCTTG
TCTATTAGTTGTGAGCTTATGATCAACTTCTCACCTTGATTTAACCATTG
TCATacaagaagaaaaattatcatGTTGGATTTCAAATAAAACGTAATTG
GCAATAAACTGAATTTAACGTGCAACTCCATTTTCCACCTGTATATATAG
ACAACGACAAAATTGAGTTCGGTTACCATGTTAGTGTGGTGGATGNATCA
TGTTGGATTTCAAATAAAACGTAATTGGCAATAAACTGAATTTAACGTGC
AACTCCATTTTCCACCTGTATATATAGACAACGACAAAATTGAGTTCGGT
TACCATGTTAGTGTGGCGGATGATCCTAGTAAAATACACAGTTATGAACT
GCTTGACCGACATTCctcgagaaaaaaaacaccGATAATATgcacaataa
aaatgaaaatcatcaTCAGGCTTTTGGTACTATATTTGTTTGCTGATAGA
TATAGAAACACTCATTATGGTTCCACAACAAAAGGGGCAGAAATTCATAT
ATGTGCATTCTTTGTTCTTTACAGTCACTAGGTTTTAAGTTGTTGCCATC
TGGTATCTTCAAATCCTTGAATACTGTTGAATATATAATTCTAGCTGTCT
AGCTGTTTTTTTATCttactaaaaagaaattaagttAATTAAAAGTTCAA
ATTATTTCAAGTGGCTGAAAATGGCTTTAcattgtattattttttaaatt
gaaggtattattattttttctactgTGGCTTATTataatttggactgaaa
aatgTTTCCATTATTTCTTGATTtaaagttgttgttttttaaagaaaagt
tcATTTAAATTGTTTGCATCTTATTCCAAATTGACCCTGAATtcatgttt
tgaaattgaaatttttcttcacGTGTAATTGTAAATTGTATGATTTGATA
TACCGtaaagttgggtaacttgcatcagtggaggaaaacttgcatagcca
tcaaatgactgaccaatcaaagcagcaaaacaAATAAACTAAGCAGCTCT
GCTCACAGCTGTACTCtactaccatttttgttttgatttaactttgtatt
ttaatgaccagccaggtcattcatttgagggctatgcatgttagcctcca
ctgatgcaagtt Run BLAST on NCBI transcript from alignment at sc0000012:449105..451069- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001935 ID=TCONS_00001935|Name=TCONS_00001935|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at sc0000012:449105..451069- (Clytia hemisphaerica)
CTCATCGACCTCTAACGGATGGACGGATAACTCATTGTTTTCAAGCGCGT
TGGTTTTATTGTTCCCGAATCAATAGAATGATCACGTGATCATTGCATCA
GAAAAATTCGAGGTCTCGATAACCCAGTTGATGTAATTCTCCTGGATGTA
GGGTAGAAAAATAAAAAACAACTTGAAAATGAAGGAAACAGGGAAAGGAG
CTCATGAAGGAAAGAAGCTGAAAATTGTATGGAATTGTCAATGAATTTTC
AAGCTTTATTATCAAATTTTGTTCCAGTAAAAGAGAGTGCCATGATCATC
TTCAAACCCAGTTTCTAATACAATTATGAAAGGTAGATAGATGTTTTGTT
TATTTTTCGTCTGATGTGTATTCTTTTTTATAAAATTATAACTTGATAAT
CTACAGTATTAGCATATTTTTGTATCATAAACTTAATGATATAAATACAA
AATACAGATCCTCACTCCAGTATCTAAACATCTGAAGGGAAATCTGAATG
TTTACATACATTTTATTTGTGAAGGTGGGGTTTATCATGCATGATCATCA
ATCTTCCTTCTATCTCATTGAGATAAATACTATTATATATGTGAAACTTC
AACAAAAATCAGGAATTCCATCTATAATATCACAGCTTCTGCTAACAGTA
CACTTTCACTCATAAAATTTTGTCTTCATTTTCAGGTTCTTCATCCTCGC
AGCACACAGAGGTGTCCATCCTGTTTACACGTGTCCATACACACAGACGA
CAGAATACGAGCTGGAACAAAAGTAATTTTTTATGAACGTAGAGTGTTGA
GATGAAACATACAAGCTCTGTGGTGGTGGCGTATAGTGTGAAAATAATGC
TTGTCTATTAGTTGTGAGCTTATGATCAACTTCTCACCTTGATTTAACCA
TTGTCATACAAGAAGAAAAATTATCATGTTGGATTTCAAATAAAACGTAA
TTGGCAATAAACTGAATTTAACGTGCAACTCCATTTTCCACCTGTATATA
TAGACAACGACAAAATTGAGTTCGGTTACCATGTTAGTGTGGTGGATGNA
TCATGTTGGATTTCAAATAAAACGTAATTGGCAATAAACTGAATTTAACG
TGCAACTCCATTTTCCACCTGTATATATAGACAACGACAAAATTGAGTTC
GGTTACCATGTTAGTGTGGCGGATGATCCTAGTAAAATACACAGTTATGA
ACTGCTTGACCGACATTCCTCGAGAAAAAAAACACCGATAATATGCACAA
TAAAAATGAAAATCATCATCAGGCTTTTGGTACTATATTTGTTTGCTGAT
AGATATAGAAACACTCATTATGGTTCCACAACAAAAGGGGCAGAAATTCA
TATATGTGCATTCTTTGTTCTTTACAGTCACTAGGTTTTAAGTTGTTGCC
ATCTGGTATCTTCAAATCCTTGAATACTGTTGAATATATAATTCTAGCTG
TCTAGCTGTTTTTTTATCTTACTAAAAAGAAATTAAGTTAATTAAAAGTT
CAAATTATTTCAAGTGGCTGAAAATGGCTTTACATTGTATTATTTTTTAA
ATTGAAGGTATTATTATTTTTTCTACTGTGGCTTATTATAATTTGGACTG
AAAAATGTTTCCATTATTTCTTGATTTAAAGTTGTTGTTTTTTAAAGAAA
AGTTCATTTAAATTGTTTGCATCTTATTCCAAATTGACCCTGAATTCATG
TTTTGAAATTGAAATTTTTCTTCACGTGTAATTGTAAATTGTATGATTTG
ATATACCGTAAAGTTGGGTAACTTGCATCAGTGGAGGAAAACTTGCATAG
CCATCAAATGACTGACCAATCAAAGCAGCAAAACAAATAAACTAAGCAGC
TCTGCTCACAGCTGTACTCTACTACCATTTTTGTTTTGATTTAACTTTGT
ATTTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGCATGTTAGCCT
CCACTGATGCAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001935-exon-sc0000012-1575043694:450738..451069 | TCONS_00001935-exon-sc0000012-1575043694:450738..451069 | Clytia hemisphaerica | exon |
| TCONS_00001935-exon-sc0000012-1575043694:449105..450384 | TCONS_00001935-exon-sc0000012-1575043694:449105..450384 | Clytia hemisphaerica | exon |
| TCONS_00001935-exon-sc0000012-1510915933:450738..451069 | TCONS_00001935-exon-sc0000012-1510915933:450738..451069 | Clytia hemisphaerica | exon |
| TCONS_00001935-exon-sc0000012-1510915933:449105..450384 | TCONS_00001935-exon-sc0000012-1510915933:449105..450384 | Clytia hemisphaerica | exon |
| TCONS_00001935-exon-sc0000012-1491911889:450738..451069 | TCONS_00001935-exon-sc0000012-1491911889:450738..451069 | Clytia hemisphaerica | exon |
| TCONS_00001935-exon-sc0000012-1491911889:449105..450384 | TCONS_00001935-exon-sc0000012-1491911889:449105..450384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:449105..451069 - |
Blast
The following BLAST results are available for this feature:
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