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TCONS_00001935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001935
Unique NameTCONS_00001935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001935 ID=TCONS_00001935|Name=TCONS_00001935|organism=Clytia hemisphaerica|type=transcript|length=1612bp
ctcaTCGACCTCTAACGGATGGACGGATAACTCATTGTTTTCAAGCGCGT
TGGTTTTATTGTTCCCGAATCAATAGAATGATCACGTGATCATTGCATCA
GAAAAATTCGAGGTCTCGATAACCCAGTTGATGTAATTCTCCTGGATGTA
gggtagaaaaataaaaaacaacttgaAAATGAAGGAAACAGGGAAAGGAG
CTCATGAAGGAAAGAAGCTGAAAATTGTATGGAATTGTCAATGAATTTTC
AAGctttattatcaaattttgttCCAGTAAAAGAGAGTGCCATGATCATC
TTCAAACCCAGTTTCTAATACAATTATGAAAGGTTCTTCATCCTCGCAGC
ACACAGAGGTGTCCATCCTGTTTACACGTGTCCATACACACAGACGACAG
AATACGAGCTGGaacaaaagtaattttttatgaACGTAGAGTGTTGAGAT
GAAACATACAAGCTCTGTGGTGGTGGCGTATAGTGTGAAAATAATGCTTG
TCTATTAGTTGTGAGCTTATGATCAACTTCTCACCTTGATTTAACCATTG
TCATacaagaagaaaaattatcatGTTGGATTTCAAATAAAACGTAATTG
GCAATAAACTGAATTTAACGTGCAACTCCATTTTCCACCTGTATATATAG
ACAACGACAAAATTGAGTTCGGTTACCATGTTAGTGTGGTGGATGNATCA
TGTTGGATTTCAAATAAAACGTAATTGGCAATAAACTGAATTTAACGTGC
AACTCCATTTTCCACCTGTATATATAGACAACGACAAAATTGAGTTCGGT
TACCATGTTAGTGTGGCGGATGATCCTAGTAAAATACACAGTTATGAACT
GCTTGACCGACATTCctcgagaaaaaaaacaccGATAATATgcacaataa
aaatgaaaatcatcaTCAGGCTTTTGGTACTATATTTGTTTGCTGATAGA
TATAGAAACACTCATTATGGTTCCACAACAAAAGGGGCAGAAATTCATAT
ATGTGCATTCTTTGTTCTTTACAGTCACTAGGTTTTAAGTTGTTGCCATC
TGGTATCTTCAAATCCTTGAATACTGTTGAATATATAATTCTAGCTGTCT
AGCTGTTTTTTTATCttactaaaaagaaattaagttAATTAAAAGTTCAA
ATTATTTCAAGTGGCTGAAAATGGCTTTAcattgtattattttttaaatt
gaaggtattattattttttctactgTGGCTTATTataatttggactgaaa
aatgTTTCCATTATTTCTTGATTtaaagttgttgttttttaaagaaaagt
tcATTTAAATTGTTTGCATCTTATTCCAAATTGACCCTGAATtcatgttt
tgaaattgaaatttttcttcacGTGTAATTGTAAATTGTATGATTTGATA
TACCGtaaagttgggtaacttgcatcagtggaggaaaacttgcatagcca
tcaaatgactgaccaatcaaagcagcaaaacaAATAAACTAAGCAGCTCT
GCTCACAGCTGTACTCtactaccatttttgttttgatttaactttgtatt
ttaatgaccagccaggtcattcatttgagggctatgcatgttagcctcca
ctgatgcaagtt
Run BLAST on NCBI

transcript from alignment at sc0000012:449105..451069-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001935 ID=TCONS_00001935|Name=TCONS_00001935|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at sc0000012:449105..451069- (Clytia hemisphaerica)
CTCATCGACCTCTAACGGATGGACGGATAACTCATTGTTTTCAAGCGCGT TGGTTTTATTGTTCCCGAATCAATAGAATGATCACGTGATCATTGCATCA GAAAAATTCGAGGTCTCGATAACCCAGTTGATGTAATTCTCCTGGATGTA GGGTAGAAAAATAAAAAACAACTTGAAAATGAAGGAAACAGGGAAAGGAG CTCATGAAGGAAAGAAGCTGAAAATTGTATGGAATTGTCAATGAATTTTC AAGCTTTATTATCAAATTTTGTTCCAGTAAAAGAGAGTGCCATGATCATC TTCAAACCCAGTTTCTAATACAATTATGAAAGGTAGATAGATGTTTTGTT TATTTTTCGTCTGATGTGTATTCTTTTTTATAAAATTATAACTTGATAAT CTACAGTATTAGCATATTTTTGTATCATAAACTTAATGATATAAATACAA AATACAGATCCTCACTCCAGTATCTAAACATCTGAAGGGAAATCTGAATG TTTACATACATTTTATTTGTGAAGGTGGGGTTTATCATGCATGATCATCA ATCTTCCTTCTATCTCATTGAGATAAATACTATTATATATGTGAAACTTC AACAAAAATCAGGAATTCCATCTATAATATCACAGCTTCTGCTAACAGTA CACTTTCACTCATAAAATTTTGTCTTCATTTTCAGGTTCTTCATCCTCGC AGCACACAGAGGTGTCCATCCTGTTTACACGTGTCCATACACACAGACGA CAGAATACGAGCTGGAACAAAAGTAATTTTTTATGAACGTAGAGTGTTGA GATGAAACATACAAGCTCTGTGGTGGTGGCGTATAGTGTGAAAATAATGC TTGTCTATTAGTTGTGAGCTTATGATCAACTTCTCACCTTGATTTAACCA TTGTCATACAAGAAGAAAAATTATCATGTTGGATTTCAAATAAAACGTAA TTGGCAATAAACTGAATTTAACGTGCAACTCCATTTTCCACCTGTATATA TAGACAACGACAAAATTGAGTTCGGTTACCATGTTAGTGTGGTGGATGNA TCATGTTGGATTTCAAATAAAACGTAATTGGCAATAAACTGAATTTAACG TGCAACTCCATTTTCCACCTGTATATATAGACAACGACAAAATTGAGTTC GGTTACCATGTTAGTGTGGCGGATGATCCTAGTAAAATACACAGTTATGA ACTGCTTGACCGACATTCCTCGAGAAAAAAAACACCGATAATATGCACAA TAAAAATGAAAATCATCATCAGGCTTTTGGTACTATATTTGTTTGCTGAT AGATATAGAAACACTCATTATGGTTCCACAACAAAAGGGGCAGAAATTCA TATATGTGCATTCTTTGTTCTTTACAGTCACTAGGTTTTAAGTTGTTGCC ATCTGGTATCTTCAAATCCTTGAATACTGTTGAATATATAATTCTAGCTG TCTAGCTGTTTTTTTATCTTACTAAAAAGAAATTAAGTTAATTAAAAGTT CAAATTATTTCAAGTGGCTGAAAATGGCTTTACATTGTATTATTTTTTAA ATTGAAGGTATTATTATTTTTTCTACTGTGGCTTATTATAATTTGGACTG AAAAATGTTTCCATTATTTCTTGATTTAAAGTTGTTGTTTTTTAAAGAAA AGTTCATTTAAATTGTTTGCATCTTATTCCAAATTGACCCTGAATTCATG TTTTGAAATTGAAATTTTTCTTCACGTGTAATTGTAAATTGTATGATTTG ATATACCGTAAAGTTGGGTAACTTGCATCAGTGGAGGAAAACTTGCATAG CCATCAAATGACTGACCAATCAAAGCAGCAAAACAAATAAACTAAGCAGC TCTGCTCACAGCTGTACTCTACTACCATTTTTGTTTTGATTTAACTTTGT ATTTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGCATGTTAGCCT CCACTGATGCAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001001XLOC_001001Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001935-exon-sc0000012-1575043694:450738..451069TCONS_00001935-exon-sc0000012-1575043694:450738..451069Clytia hemisphaericaexon
TCONS_00001935-exon-sc0000012-1575043694:449105..450384TCONS_00001935-exon-sc0000012-1575043694:449105..450384Clytia hemisphaericaexon
TCONS_00001935-exon-sc0000012-1510915933:450738..451069TCONS_00001935-exon-sc0000012-1510915933:450738..451069Clytia hemisphaericaexon
TCONS_00001935-exon-sc0000012-1510915933:449105..450384TCONS_00001935-exon-sc0000012-1510915933:449105..450384Clytia hemisphaericaexon
TCONS_00001935-exon-sc0000012-1491911889:450738..451069TCONS_00001935-exon-sc0000012-1491911889:450738..451069Clytia hemisphaericaexon
TCONS_00001935-exon-sc0000012-1491911889:449105..450384TCONS_00001935-exon-sc0000012-1491911889:449105..450384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:449105..451069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22169 1.48756 1.36161 1.21256 2.96243 1.64944 2.54954 2.67472 1.69928 2.04695 3.2664 2.30065 1.44118 1.19656 2.06495 2.07206 2.29005 1.79061 1.83936 2.87984 4.3446 4.72132 2.3916 2.66314 0.425923 0.833369 10.8478 10.3401 5.218 5.28972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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