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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001918 ID=TCONS_00001918|Name=TCONS_00001918|organism=Clytia hemisphaerica|type=transcript|length=1540bpRun BLAST on NCBI transcript from alignment at sc0000012:165313..177079- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001918 ID=TCONS_00001918|Name=TCONS_00001918|organism=Clytia hemisphaerica|type=transcript|length=11767bp|location=Sequence derived from alignment at sc0000012:165313..177079- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001918 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.051e-26 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1
Query: 403 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGXXXXXXXXXXXXXXXXCNNPKPAFGGKSCIGPKIKFESCNNGACIPDLRNQGQNCWKKPTYFCG-----KKGLC 816
+ GKW+TW++ AC+ CG G R+ TR C++P P +GG+ CEG ++ + CN+ CP +G WS WS +G C+R C G+ R R C+NP P+ GG++C GP + + CN C D + W + + CG +K LC
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841 HSP 2 Score: 111.694 bits (278), Expect = 1.248e-25 Identity = 64/168 (38.10%), Postives = 91/168 (54.17%), Query Frame = 1
Query: 247 YEECFETKAADHGSRYPGQTSYEKCINTVFHHCEKGQNCIGTTDSVY---IYAKVVDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGXXXXXXXXXXXXXXXXCNNPKPAFGGKSCIGPKIKFESCNNGAC 741
+EEC T++ G+ QT C N H G+ C G + I V G WS W G C+ CG G + R CNNP PAFGG C+G + + + CN CP++GKW+TW+S+ AC+ CG G R+ TR C++P P +GG+ C G ++ + CN+ C
Sbjct: 4595 WEEC--TRSCGRGN----QTRTRTCNNPSVQH--GGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 3 Score: 107.842 bits (268), Expect = 2.677e-24 Identity = 55/133 (41.35%), Postives = 68/133 (51.13%), Query Frame = 1
Query: 403 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGXXXXXXXXXXXXXXXXCNNPKPAFGGKSCIGPKIKFESCNNGACIPDLRNQGQNCWKKPTYFCG 801
VDG WS WS C R CG G + TR CNNP GG+ CEG ++ CN CPV+G WS W +G C+ CG G + R CNNP PAFGG C G + + + CN C + W + CG
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCG 4717 HSP 4 Score: 100.523 bits (249), Expect = 5.316e-22 Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 409 GKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGXXXXXXXXXXXXXXXXCNNPKPAFGGKSCIGPKIKFESCNNGAC 741
G WS WS G C+R C G+ R R C+NP P+ GG++C GP + + CN CPV+G W +W S+ C+ CG G + R C++P P GG+ C G + CN AC
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 5 Score: 93.9745 bits (232), Expect = 6.068e-20 Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 1
Query: 403 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGXXXXXXXXXXXXXXXXCNNPKPAFGGKSCIGPKIKFESCNNGACIPDLRNQGQNCWKKPTYFCGK 804
V G +S WSA AC+ CG G ++ +R CN P PA GGK C+G ++ +C N CPV+G WS WS + C R CG G + TR CNNP GG+ C G ++ CN C W + CGK
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGK 4661 The following BLAST results are available for this feature:
BLAST of TCONS_00001918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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