TCONS_00001914 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001914
Unique Name	TCONS_00001914
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1260

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:125467..133626-

transcript sequence

>TCONS_00001914 ID=TCONS_00001914|Name=TCONS_00001914|organism=Clytia hemisphaerica|type=transcript|length=1260bp
CAATTATTCAATGATATCTTTTTGGCCTTTTAGATtctaaatttagaaaa
taagcaattttaaaagaaaacacaaTGAAGGGaagaattattattttttc
cattCTTGGATGTCCATTCTGTATCAAATGTAAAGGTTATTTAGATCAAC
TTGGCTTAAATTATATTGATGTCAATTTGGATAAGAACAGTTTGGCACGA
CAGAAAGTCATTGAGATGACTGGCCAGAAGACGGTGCCTCAGGTTTTCTT
CAATGAAAGACATGTTGGTGGTTGGGACAATTTAAGCAAACTGAGCAAAG
AGGAACTGAACGACTTGATCAACCTAGTGGAACAGAATGAGCCACCAAAA
GAAGCACCGAATCCTTCTGATTGGATGGAGGCTGATGACGAAACAGAAGT
TGGTAAAGGTATGCTTGAGTTCCATTGTGAATTGGATGAATATGCAGAGT
TGACAAAGGAATTACGAGATAGCGGTATTGTTGGAGATCATTGGAAAAAC
TTgaagaattacaaaaattcgTTCGTTGGAAAGGAAGCTGTTGATTGGCT
TGTCAAATACAAGAATCTAGAAAGAAAAGCAGCAGTAGAGATGTGCCAAC
AACTGGTGGAACGCCATTTCGGACATAACGTGAAACGTGGTGAATCAGAA
GAATTTAAAGATGATGATTCAGTATACCAATTCATAGAAGATGTACAGGC
CAACGCCTTGAATGCTGGTATCAAAACACAATGTGAACCAAGGCCTGCCA
GCGAGCTTGGTGAAGAGTTAAGACAACTGATCCTTGCCATCTATAATAAT
CATCTCTCACCAGACGGAAAGAAAGTGGATTACAGATCAATCGCAAAAGA
CGAGAAATTTAAACTATACGCAACAAAGACAGCAGAATTACAAAGAGTCA
ACGTGGAAGAAGCTACTCGTGAAGAGAAATTGGCTTTCTTCATCAACATC
TATAACGCACTGGTCATTCATGCTTTTGTTGTGGTCGGCCCACCTGCCAA
CTTGTGGCAACGCTATAAGtttttcaacACTGTATCGTACATCATCGGTG
GATACACTTATTCTTTAAACGAAATTGAAAATGGAGTGTTGAGGTCCAAC
CGGAAACCACTTGGCTCATTCAAGAAACCATTCAGCAAGACCGACCCTCG
TCTCAAGATTGCACTGGAAACTTGTGAACCCAAGGTGCATTTTGCGTTGG
TGTGTGGTGCCAAAAGTTGTCCACCCATCAAAACTTATTCTGCTAAGGTA
CGTGAGaaat

Run BLAST on NCBI

transcript from alignment at sc0000012:125467..133626-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001914 ID=TCONS_00001914|Name=TCONS_00001914|organism=Clytia hemisphaerica|type=transcript|length=8160bp|location=Sequence derived from alignment at sc0000012:125467..133626- (Clytia hemisphaerica)
CAATTATTCAATGATATCTTTTTGGCCTTTTAGATTCTAAATTTAGAAAA
TAAGCAATTTTAAAAGAAAACACAATGAAGGGAAGAATTATTATTTTTTC
CATTCTTGGATGTCCATTCTGTATCAAATGTAAAGGTTATTTAGATCAAC
TTGGCTTAAATTATATTGATGTCAATTTGGATAAGAACAGTTTGGCACGA
CAGAAAGTCATTGAGATGACTGGCCAGAAGACGGTGCCTCAGGTTTTCTT
CAATGAAAGACATGTTGGTGGTTGGGACAATTTAAGCAAACTGGTAAGGT
TAATTATAATTAGCCTTGAAATTGTTACATTTGAATAAATTTAAGGATTG
CATTTTGTCAATAAACTGCCCTTTTGCCATTCACAATTACCATTTTGACT
TTTAAACATTACATAATCCTAGCCAAGATTAAAGTTAATCAGATTATCCT
GAGACTATGATTATGTTATGTTTTTGGGTCGATACTTTGTTGCTAATTTT
TGGAGTTTTAAGTGTATCGTGAATGGCAAAGGGTCTAATTCTACATGACA
ATTGATATTTAACAAATCTCGAATCTCTTAGTAGCTAATGGTCAATGCTT
TACGTGGGTAGTAATAGTAAACTCACAAAAAGTTTAACTTTTTATGAATT
TGATTTGAAGCCATAGAAGTTATTTCAAAAACTACTGAAAAAGTTTAGAA
ACAAGTTTTTTGCAACTTTTGCTTAAATCCCATAAAAACAAGGCTGTTAG
ATTCTTTAACTCAGATAAGTGCTCTGTATTTTTAGAGCAAAGAGGAACTG
AACGACTTGATCAACCTAGTGGAACAGAATGAGCCACCAAAAGAAGCACC
GAATCCTTCTGATTGGATGGAGGCTGATGACGAAACAGAAGTTGGTAAAG
GTATGAAAACTATTCGATAAAACCTGGAGTTTTTAACCAATCAATAAACA
CTTTCCAACAATAGAATTTATTGATACAAACCAACCTATCGGTTAAGAAC
AGTGGCGTGGGAAGCATTTTGATATTAGTGACACTGCGAGGGGGAATTTT
TAGATTTGGTACCTCTAGAATGCCAAAGAATGCTCTCAAAAAGTAACAAT
TCATGACTAAAGAACAAAGAAAAGCTTATCCTTTGAAAATTTATTTGGGG
TCAGTTCCCCCTTGCTACCCCGCTAGCTACAGTATTGAACAATTTGCAAT
TATCGATAAAATCTATCAAGAAAACGAAGATAATCCTTTTCCCATGGAAG
GTCACAAAGTTGGTCTAATATTAGGAGAAATTCAGCTAATATACTTAAGT
GACCTGATGGCTGAAGTTACTGGACTTGCTTGTAAAAATAATTTGTGTAT
CGTTTCTTATTTCAGACATGCTTGAGTTCCATTGTGAATTGGATGAATAT
GCAGAGTTGACAAAGGAATTACGAGATAGCGGTATTGTTGGAGATCATTG
GAAAAACTTGAAGAATTACAAAAATTCGTTCGTTGGAAAGGAAGCTGTTG
ATTGGCTTGTCAAATACAAGAATCTAGGTTGGTTGGTATTTTATTACTGT
AAAATATAGTTTTGACGTTGTTGGTACCGGATGTTTCAAAAAAAAAGTGT
ACAAGTTTGAATTAAGATTGTGAGAAAACTGAAAATAGTACATACCTAAA
CTTTTCACCATCAGAAGAAGAAAGGCTAACTTAAATTTTAAGCTATCATA
CTTTCAATTCAAGTTAGTCATTCCTCCTTCGAATGCCAAAAAGATTGGAT
TTATAACATTTTTAGTTTTCTCACAAACTAAGTTCAAACTTGTACACTTT
TTTCTGAAACACTCGGTATATTCTTTGCTCTTATTTTGTAAGTTGATGCA
TAGTTCGTTCCCCCCTTTCTTAAGGGGGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG
GGGGGGGGGGGGTGACACCTTCTGAAAAATTAAAGAAGGGGCGATCAGAA
ATTTTCATGAAAAAGGGGGGATAGCAAGGAAGGATAGCAAGGAAGGATAG
CAAGGAAGGGGGATGTTTAAGAAGGGGGATGTTTAAGAAGGGGGCGTTTA
AGAAGGGGCGTTTAAGAAGGGGGCTTACAAAGTACTGCGCTTACATATGT
ATTGTAGATTATTTTCAGGTACTAAATTTCAAGGAAGTTTACTGTTAGAG
TACTCTGAGTCAAAAAATAAGAAAGAAGTTTATTATTTCGCTTTCTCTCT
CTAAAGATATTTCACCATATATTTGTTAGCTATTTTTGTCCAAAATCCTT
GGGGGATAGGCATTTTTAAAGGTTGGGGAATGCCAAGAAGAGGGGATCAT
TTAAGAAGGGGGGGTCATTTAAGTAGGGATATCATTTAAGAAGGGGGGAT
CAGACCCTTTTCCGCACTATGTGATGAAATTAACTTTCTAGTTCTTTCTC
CTGCGACTCAAATCTTAATGTTAAAATTCAAATCAAGCTATTTCAAAAGA
ATTTTAAACCCATAAAAGATAATTATCGTACCAGGATAATGTACATTTTA
ACCGGACAAATAGCCTTATTTCACAAAAAATCTGAAATTTCTATTTTTGA
ATGTTATTGCAAAGAATTCAATGCATGATGTGAATCGTGAATCAATATAC
AGAATTGTATTTCTGTTTTATAGAAAGAAAAGCAGCAGTAGAGATGTGCC
AACAACTGGTGGAACGCCATTTCGGACATAACGTGAAACGTGGTGAATCA
GAAGAATTTAAAGATGATGATTCAGTATACCAATTCATAGAAGATGTACA
GGCCAACGCCTTGAATGCTGGTATCAAAACACAATGTGAACCAAGGCCTG
GTATGTTGGTTGTATTTCATATAATCAAAAAAATATTTCAAAACCAAAAA
TTTAAATTTAAATTTTTGGTTTTGAAATATATTTTTGATTAAAGAAGCTC
TACTCCTGGTTGGTTTTATCGAGCACTCTTTGAATATGATTTCACCTCAT
TTGATTCAATTCTCCTGTATCAACAAAAGTTAAAGTTCTTCTGTTCCTGG
TGGCTTTGTACAAAGGATAGGAAGAGATTTTTCTGTCTTAAGATTTATCG
AAATTTGAAGATTCTTTGTTACTACATTGTATAAATTAAAAATTCCATCT
GCAGCGAAAAACTTTGGTTAGACCATATCGTTATCTTTGTACTCATTGCA
CTTCAGTATATCATGGGTCTTGAGCGCTATCTAGTTACAAGCTTAAAGTA
ACAAAGCCTAGAACGTGGTCCTTTTCTTTCCTCTTTGTAGGCAAGAAGAG
AAAAGGCTTTGGGTATTTTGTGCTTGTATTGAAAGTCATTTTACAAATAA
TATGGGACATGGTGTTTGGGACTTGGAGGTTTTTGTTAAGACATCGATTC
TTTTTGTATGTGAATTTGAACACCCAGGAAGACAGTAGGATTAATGAAGG
CGATAGTCACGAGAAACTCTCTCCCCACCAAGGTACATACATGACTAATT
TCGACTAATAATTGGGATGAGAATTGTGTACAATATACAATTTAGAGTCT
GGGCCCGAGTTTACTAGTAGTAAAGCAACTTTAAAATGCTTGTGACGAGA
AGTGGTTGTTTCTGAGGTCGTTCGCCTTTACCTTCTAAATTTCAAACCGG
TTTTCTTTTATGCAGCTTTGTATTGGGGGTGATTTTATGGTGTTAAAATT
CTATTCGACAAATTGAATTTAATACGAAGGTCAATTAACTGAAATTTGAA
GTAAACTTTTGATCCTTTAATTGATTTTTTTAAGAATTACTGTTAAAGAT
GATAAATAAAAACTTGATTTCAATTTTCAATTTTTTTTTCTTTGTTTCCC
CTTTTCAGCCAGCGAGCTTGGTGAAGAGTTAAGACAACTGATCCTTGCCA
TCTATAATAATCATCTCTCACCAGACGGAAAGGTTAGTCAACGTCACATT
ATTTTTTGTTGAACCTATGTACGTGTTTTTAATAAGAGCATTCAAAACTT
TTGGAGCCTTCGGATGTTCTTAACTTTTTGAGTTTTAAGGCTGAACATGT
TTTTGTGCAATTTCCTAAGAAATTGGTTGTTTTAGATTTCATAAAGCTTT
AAAATGCTCATAAGTTGCATAATATTCTCATATTTTGTTATTACATAAAT
ACTAACCAATGATGTCGTATATAGTTCCTAGTGTTCGATGCCTGACCATT
GTAGTAGATTGCACAGCAAACGAATCCAAAAGAATTAGAGTAGTCCTCGA
GTAGTCTAGCATTCTAGATGACTAGACGATATTATCAGTAGAAAATAAGC
AAAAAATAATGAGAGGGACAAAATTGTATTATATTATACAAACTGATATT
ATCGCGTATTACACGTTTTTATAAGAACATAAGGCTTCGATGGCCGAAAT
GTTAAGAACAAGTTAAGGATATCTTAAGGCTTTTCGGACTAAAAAACAGC
CAATTTCTTAGGAAAAATGGACAAAAATACATAAAATGGGGAAAATAAGA
ACATGTTAAGAACATTTTTAGGCCTGAAACTCAAAAAGTTTAGTATCATC
ATATAATACCCATATCATTGAATTAGACGGGATAGATTTATACTGAGATA
CGTATTACCAAATTTCTCTTTTCATCAGAAAGTGGATTACAGATCAATCG
CAAAAGACGAGAAATTTAAACTATACGCAACAAAGACAGCAGAATTACAA
AGAGTCAACGTGGAAGAAGCTACTCGTGAAGAGAAATTGGCTTTCTTCAT
CAACATCTATAACGCACTGGTCATTCATGCTTTTGTTGTGGTCGGCCCAC
CTGCCAACTTGTGGCAACGCTATAAGGTACATTGTAGAAATTCAGTACTG
TAAATTTAGTACGCCGTCACCCGGCGTTGTATCCGCCGAAATGGGATAAG
CTGAACGCATCTAAGCCCTTTGGACAGCAGAGAGGGTAATAAGATCTGAT
TTAAGCCCAAGGAATAAAATTTTTTAACGTTTTGTGACGTCGTGGGGTCC
TAAATGACGTCATGAAAAGGGTAACTTTTCACTTCACTGAAATTATCACT
TCATTGACCCAACGATTTCCGACCAAATAAGGGTCAATTCTTGATTAAAT
TGTTCTCAAATTGGAGATATTGCATTTTTCAGGTTTTCACGACGTCAGTA
AACAACAAAACTTGCTCTAAATTATATAAATTATATCATTGCTAGCCCCT
AGACTAGCAAGCGTCTGTCTTTCCTTGGACACAGGAACGCGGGAATAGTG
CTTATAATAAAGAGTTCTTATAAAAAATAGAAATTGTCGCGGGAGAGTGG
ATTGGAAGGACAGACTAGTTCCAAACGGTGCAATACGGGATTTTGCTTCA
ATCTAATCTCAGGCAACGTTCCCTCGAAAAAGAGGGAAGATAAAATGAAT
GGACACGGCTTATTTTTTCTTCTATTCTCATCGCAATATTTGAGTTTCTC
GGAGTTATGGATGAGAAAAAATATATAAAAAACACAAACAGAAAAACGTG
GCGAGGACTTCTCCAACTTCTTTGCTAAACTGAGAAGAGAAGATTTTTAA
TGCTTTTAAATGTTTATAAGCACAGATTTAAACTGTCTTGGCATTCTCTA
TCTGAGATACTTTATTCATACATTGTTTTTGGCTTGGTTGGGACGTTGAT
ATATTCAAAAAACAAACAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCTATTGTACAAGTGCAGTATTTAT
GACAATATGACACAGCTGAACACAGATTCCATGACTGCATGCAGGATACT
TTTTGCAGGGAATGTTCAATATGTTTATGCTAACATTCATTGCGTAACGG
ATCACTGCTTTTTCTATAGTACAAGTTAAACTTGATAACCTTATCCCAGA
GAATGTAACTCTGGAATAGCTACAGAAATCCTCAAAAATTAAGATGGAAA
TGGTATTTATATAACATTTTTGGTGGTGCAATACATGGTGTGGAAATGAT
GAAAAGTGAAAGTGGTAATTTGGAATTTAAAAATTGAATGTTTTTTATAC
GAAAACAATATTCTGACAAGCTGACCAGTGAGACACATCTTGGTTCTATT
TGTGAATGAAAATAACAACATTTTACATTGAGATGACTGGTTTTTTGGGT
TTTCGGATGCCCGGCCGTTGTTTAGCTGGATTTCACTACCTTGAAATTGT
TAGATGTACGAGGATGTTTTGGGGTTTCAGACTTCCAGGGGGCACTTAGG
CAAAATTAAGTATGTGGACATGCCGCTGATCAGGGTCCCTTTTTCAGACT
CTAGAGATATATGATAGGGTGCCAAATTTGTACTAATTTTCAAGATAATA
ACCCTGACTGGGTCGATTTTTGGTCATTTTAGACAATTTTTACAGTGAGA
ATATTAGAAATATTAGAAAATGTTTGAATTTTTCGTCTACTTTAAGTCAT
TTTTGCCACTTCAAAGATTTTTTTCAATTGAATCATTTATCGTTCTGAAA
TGGTCCCAAATTTACCAAACATTCATATCTTACATCTTTTCATTCAGACA
AACAAATCATACTTTTTGTGAATAGTTTTATTTAACTCCTTGTCTTGTTG
TTGTTATCTTGTTTCAAGTACTTTCAAGTACTTTCAATTTTTTTTAAATA
AAAAAGCTTCTAAATTGACTGATATTCCATTGTACACCTTCTATATAATA
CATTAAAATCAAAAAATAATCAGGATGTGAGTTTGTTTTGATTTGAGTGA
ATTGAATTATATATCCAAATGTTGCACTATAAGATGATAAAACACCTCTC
ATTTAACAAAATAAAAAACAAGTTTTCAAAAAAAATATTTTCGGGGCTTC
ATGAACGCTGTTAATTTAGTTCAGCAATTAGTTTTTCAAGAGTCTCATTA
AAAAAAACATAATAATAAAGTATAAAAAGTACCGAGTTTTGTTTACTTTT
TTATTCTAATCCGTGAGAGTGAGTGCGCTGTTTTGAGTGAGCACTCCGCC
GCGGTAGAAAAAGCACTCCACCGTTTATTTAGTAAATAGCGCCTTTTGGA
AGTAGTCGTTGTATTCAGTGAACATATATAGAAATAGATCCCATTGCAAG
TTCAATCTGCAGCGAAATACAACGACGTGGTTTACTAGTCTACTAGCCCC
TGGACAATAGCTCATATAAAATTTCCCTCAATAAAAATAATTAATGGTTT
TGCTATTGATTATTTTATAACACCCTGGTCTTTTCTCAAACGTTATCAAA
AGTTAGAAGCTGTTTACTTAGCCCATAGTTTTACGTCTTTTCCAGGGCTA
TTTTTTTTTGAATTGTGGGAAAGATACATTGTCAGATTATCCATTGTAAT
TATCCAAGGAATTGTTCCGAGGGTAGAATTGTTTTGCTGATACAGTGAAA
TCTTCATCATAACTCGAATGTCTCGTTAACTCGAACATGTTTTATGGTCC
TTTCAATTAACAATGCGTTATAAACATTACAACCTTAACTGGAACAAATT
TGTGTCCACAGTGCGTGTTCGAGCTACGGAGATTCCATTGTACATCTCTA
TTTCGTTCATTCTTTTCAGTTTTTCAACACTGTATCGTACATCATCGGTG
GATACACTTATTCTTTAAACGAAATTGAAAATGGAGTGTTGAGGTCCAAC
CGGAAACCACTTGGCTCATTCAAGAAACCATTCAGCAAGACCGACCCTCG
TCTCAAGATTGCACTGGAAACTTGTGAACCCAAGGTGCATTTTGCGTTGG
TGTGTGGTGCCAAAAGTTGTCCACCCATCAAAACTTATTCTGCTAAGGTA
CGTGAGAAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000988	XLOC_000988	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:125467..133626 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25374	0	0	0	11.5196	6.98999	7.1287	3.76592	4.06305	7.64619	5.1171	4.9455	4.89506	4.95178	0	0	0	0	0	0	0.574026	0	0	0	10.5042	9.48946	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001914 vs. Swiss-Prot (Human)

BLAST of TCONS_00001914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001914 (transcript) - C. hemisphaerica