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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001868 ID=TCONS_00001868|Name=TCONS_00001868|organism=Clytia hemisphaerica|type=transcript|length=2544bpRun BLAST on NCBI transcript from alignment at sc0000012:62297..95755- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001868 ID=TCONS_00001868|Name=TCONS_00001868|organism=Clytia hemisphaerica|type=transcript|length=33459bp|location=Sequence derived from alignment at sc0000012:62297..95755- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001868 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3) HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0 Identity = 351/637 (55.10%), Postives = 442/637 (69.39%), Query Frame = 1
Query: 1 MSELYNRPVHIAHVARKEEILVIKAAKKKGLQVTCEVAPHHLFLSTDDTKRIGEGRARVKPQICSAEDQKALWENMDFIDCFATDHAPHHVDEKNSENPPPGFPGLETMLPLLLTAVKDGRLTLDDVILRLHTNPRRIFGLPEQHDTYVEVDLNEEWTIPDAMAYTKSKWTPFAGMKVFGKVCRVVVRGELAVIEDQVLAKPGFGEDVRAWE-------PPNC--------------------------LPP-LSKAQKQKLDAINNEQPTPANLPDIEQPSLLSGP------PTPIRKISNIMEKLHTQDGLSAEXXXXXXXXXXXXXSQLLVGKHVLKVESINKDQLNALFNIAQQLKKEERRGRQIDTLKGKVLALMFFEPSTRTACSFQSAMQRLGGTTIAIKPGNSSLTKGESVQDTVATMACYSDVIVMRHPTKGMVQQAAEKSRRPIINAGDGVGEHPTQALLDVFTIREEIGTVNGITVTMVGDLKNGRTVHSLARLLTLYRVNLQYVSPDSLPMPENVQNYVHKCGIPQRQFKTIEEALPTTDVLYMTRIQRERFADQQEYEKVHGYFVLTPKMLTKAKNKMIVMHPFPRVNEISTEVDCDPRAAYFRQMEYGMFVRMALLSMLTGRF 1791
+++L R VHI HVARKEEIL+IKAAK +GL VTCEVAPHHLFLS DD +R+G G+ V+P++ S +D +ALWENM IDCFA+DHAPH ++EK PPPGFPGLETMLPLLLTAV +GRL+LDD++ RLH NPRRIF LP Q DTYVEVDL EWTIP M ++K+ WTPF G KV G V RVV+RGE+A I+ QVL PG+G+DVR W PP+ LPP + +A L A E+P + + +P L+ P P P+ + ++ + L T L + H LVG+H+L V+ KDQ++ LFN+A L+ ++ R +D LKGKV+A MF+E STRT+ SF +AM RLGG ++ SS+ KGES+ D+V TM+CY+DV+V+RHP G V+ AA+ RRP+INAGDGVGEHPTQALLD+FTIREE+GTVNG+T+TMVGDLK+GRTVHSLA LLT YRV+L+YV+P SL MP V+ +V G Q +F++IEEALP TDVLYMTRIQ+ERF QEYE G F+LTP ++T+AK KM+VMHP PRVNEIS EVD DPRAAYFRQ E GM++RMALL+ + GRF
Sbjct: 1602 VAQLTQRSVHICHVARKEEILLIKAAKARGLPVTCEVAPHHLFLSHDDLERLGPGKGEVRPELGSRQDVEALWENMAVIDCFASDHAPHTLEEKCGSRPPPGFPGLETMLPLLLTAVSEGRLSLDDLLQRLHHNPRRIFHLPPQEDTYVEVDLEHEWTIPSHMPFSKAHWTPFEGQKVKGTVRRVVLRGEVAYIDGQVLVPPGYGQDVRKWPQGAVPQLPPSAPATSEMTTTPERPRRGIPGLPDGRFHLPPRIHRASDPGLPA---EEPKEKSSRKVAEPELMGTPDGTCYPPPPVPRQAS-PQNLGTPGLLHPQTSPLLHS---------LVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225 The following BLAST results are available for this feature:
BLAST of TCONS_00001868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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