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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001863 ID=TCONS_00001863|Name=TCONS_00001863|organism=Clytia hemisphaerica|type=transcript|length=2307bp
CGTTACCTTCAGTCAAGCTAACATGGTCTTCATCCAACCATTGTTTAGTT
ATTCCGAACAAATTCTTCTCTCGCTGTGAAGGCTCTAGTAACCAGTGAGC
TACTTTCGGGTCTTTCAAAACTGCTTTTGGTAACAAAGTATCGCACAACT
CGTATATGATCTTCAACTGCTCCTTCAGGTCAAAACCCATGATAGTCGAA
GATGCATGCTGGTTAAGGACGGATTGGATACTCTTTAAACGGACTGGCAA
AGGCAGTTCCTGGCAGACATCTGGAGGTAAGGCAGTATCGTCCAATTCGT
TGTGACGTACACCGTCTTCCTGCAAACTGATGTAGTATGAATCCTTTTTA
CCCCAGCATATGGCAAGTCCTGTCAACTGTAAATCATCTCTGGTATATAG
TAAACGATTGCTGGTTGACGACATTGCAGATGGTTTGGATGTGGTTGAAA
CGTCTCTGGCAGATCTCAAGGGACGGCCGATCTTTGATGAAGTTGTTTGA
CTGGTGGGTTTATGAGTTTCACAAGAGAAGGCAACGGTGAAGGATGATTT
GGCTTTCCATTCTTGGATGAATGTCAAGAATAACGTTTTGGAGGATGCGA
CATCGATAATTAGGAATTCATTAGATGCACTTTCGTTTAGGTTGGTTTCT
TGAGGAGTGACTCTCTCTGTTGCTTGAGATGTAGAATTCTTAGTGAAAAG
TTCAGTACTCTCGAATAGGTCTCCACTGTTGTCATTGCTTTCAATGTTCT
GATCGAATAAATCAACCTCCGGTGAAGTAACTGACGTTAAATTTCGTTGC
AAAGTTGATGCTTCCCCGGTTAAAGCGTCATTGAATTGGGAATGTAATTT
CATGGGTGGTAATATTTTAGGAAAAGTGTCCAGTGCTTCGTCAGTTGTTG
ATAGTCGCAAGGAAAGGTTTGGCGAGGGTGTGGTCACACTTAGTTCGGTT
TTCGGCGACTCGATTAGTATTGGTGATTTTTCTTTCGGTTTTAAAGCACT
GTCAGACAAGAGTAAGAGCGAATCAGATGATTCCAAGTAATCGCTTGTCT
TTCgtttggttttcttactgttCACAGAACCCTGTTGCTCCTGGTGGTTG
AGTTCACATTCTGCAATCGTTCGAGATTCTGGTTCGTCCTTGGTAACAAT
ATCTCTGGTTTTATTAACTGTGTGGGTTGAGAAGCTTGgaattttatcat
tcaaaaacaaagaatctTGGGTGTGCAGTTTATCACAAAAATTCCCAGTG
TTCAGGATTCGATCTTCGGAAAGGTTCGGTGTTTGCTCTGACATAGTTTG
GTCTTGATTCTTAGTTGAAAAGCTATTGAAGTCTTGGTTTGGTATCAAGA
ATAACGAGTCTTGAGTTTCGGATTTATCGGATAATTGGTTGTGGAGCACT
GTATCTTTCAATTGTTCAATCAAAATGTCTGTAGTCATTTTAATATcaga
ttgattttcttttcctaGTATGTTTGGCAATGATTCGCCAAAGAGTAACG
AATCATTACTCAAATTTTCAACCATCTTTTGAGCAGTGTTAATGActtga
ttttcttgaaatagAGACATGTCATTATCAGCCAAAGATAAATTTCTACT
GAGATTCTGAGTCGAAAGATTCTGTATTTCTCGTAACACAGGACTAGGCG
ATTGAGACGTGCTTTTCTGCAAAGCATACGCTAGTTGTGTTCCAACTTTT
GAGTTACTATCAACTCTTTCACCACTACGTTGTTCGGGAGATAAACGTTT
CGAAGATCTCAACGGAGTGATTTTCTCAGCCGATGCTCTTTTACGATTCC
TACGTTTTATAGTACTCTTAGTGAGGCTGGATCTTCTTTTCTTGCCTGAT
GAACTGGAGGAAGATTTAGAGATTGTCGAATTCTTGGATGAGAGATTTAA
CTGCCCAATGGGAATGCCTAGTGCTTGTGCATCCGCTGCAAGGATACGTT
TGGCTTCGTCAATGATCAATCTGCCAGCTTCCTGCTCCGACAAGCCTTCT
TTCCCACTCAACCATAAACATTTAGGTACTGATTTACCCACCATTTCAGC
ATCCTTTCCTTTTAGTTTGTTACTGTAAAACGGTGTCGATTCACGAAGCA
ATTTAGAGATTTCTTTTTCACTTGCATTGGCTATGGCACTCACAGTTTGA
AATCCGTTCTGATAGAATAAACGAGCAGTGAAACGATTCAGTAACGATAT
GCGAACCAGATTACACAGGTCCCGGCAAACACCAAATGACAAACGACTTT
GAAATTGCTCCAGTAAGACTTCTAAACATGACCAGCCAAGTTTCTTACAA
AACACGG Run BLAST on NCBI transcript from alignment at sc0000012:1138497..1140868+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001863 ID=TCONS_00001863|Name=TCONS_00001863|organism=Clytia hemisphaerica|type=transcript|length=2372bp|location=Sequence derived from alignment at sc0000012:1138497..1140868+ (Clytia hemisphaerica)
CGTTACCTTCAGTCAAGCTAACATGGTCTTCATCCAACCATTGTTTAGTT
ATTCCGAACAAATTCTTCTCTCGCTGTGAAGGCTCTAGTAACCAGTGAGC
TACTTTCGGGTCTTTCAAAACTGCTTTTGGTAACAAAGTATCGCACAACT
CGTATATGATCTTCAACTGCTCCTTCAGGTCAAAACCAATGATANCAACA
AAGTATCACACAACTCGTATATGATCTTCAACTGCTCCTTCAGGTCAAAA
CCCATGATAGTCGAAGATGCATGCTGGTTAAGGACGGATTGGATACTCTT
TAAACGGACTGGCAAAGGCAGTTCCTGGCAGACATCTGGAGGTAAGGCAG
TATCGTCCAATTCGTTGTGACGTACACCGTCTTCCTGCAAACTGATGTAG
TATGAATCCTTTTTACCCCAGCATATGGCAAGTCCTGTCAACTGTAAATC
ATCTCTGGTATATAGTAAACGATTGCTGGTTGACGACATTGCAGATGGTT
TGGATGTGGTTGAAACGTCTCTGGCAGATCTCAAGGGACGGCCGATCTTT
GATGAAGTTGTTTGACTGGTGGGTTTATGAGTTTCACAAGAGAAGGCAAC
GGTGAAGGATGATTTGGCTTTCCATTCTTGGATGAATGTCAAGAATAACG
TTTTGGAGGATGCGACATCGATAATTAGGAATTCATTAGATGCACTTTCG
TTTAGGTTGGTTTCTTGAGGAGTGACTCTCTCTGTTGCTTGAGATGTAGA
ATTCTTAGTGAAAAGTTCAGTACTCTCGAATAGGTCTCCACTGTTGTCAT
TGCTTTCAATGTTCTGATCGAATAAATCAACCTCCGGTGAAGTAACTGAC
GTTAAATTTCGTTGCAAAGTTGATGCTTCCCCGGTTAAAGCGTCATTGAA
TTGGGAATGTAATTTCATGGGTGGTAATATTTTAGGAAAAGTGTCCAGTG
CTTCGTCAGTTGTTGATAGTCGCAAGGAAAGGTTTGGCGAGGGTGTGGTC
ACACTTAGTTCGGTTTTCGGCGACTCGATTAGTATTGGTGATTTTTCTTT
CGGTTTTAAAGCACTGTCAGACAAGAGTAAGAGCGAATCAGATGATTCCA
AGTAATCGCTTGTCTTTCgtttggttttcttactgttCACAGAACCCTGT
TGCTCCTGGTGGTTGAGTTCACATTCTGCAATCGTTCGAGATTCTGGTTC
GTCCTTGGTAACAATATCTCTGGTTTTATTAACTGTGTGGGTTGAGAAGC
TTGgaattttatcattcaaaaacaaagaatctTGGGTGTGCAGTTTATCA
CAAAAATTCCCAGTGTTCAGGATTCGATCTTCGGAAAGGTTCGGTGTTTG
CTCTGACATAGTTTGGTCTTGATTCTTAGTTGAAAAGCTATTGAAGTCTT
GGTTTGGTATCAAGAATAACGAGTCTTGAGTTTCGGATTTATCGGATAAT
TGGTTGTGGAGCACTGTATCTTTCAATTGTTCAATCAAAATGTCTGTAGT
CATTTTAATATcagattgattttcttttcctaGTATGTTTGGCAATGATT
CGCCAAAGAGTAACGAATCATTACTCAAATTTTCAACCATCTTTTGAGCA
GTGTTAATGActtgattttcttgaaatagAGACATGTCATTATCAGCCAA
AGATAAATTTCTACTGAGATTCTGAGTCGAAAGATTCTGTATTTCTCGTA
ACACAGGACTAGGCGATTGAGACGTGCTTTTCTGCAAAGCATACGCTAGT
TGTGTTCCAACTTTTGAGTTACTATCAACTCTTTCACCACTACGTTGTTC
GGGAGATAAACGTTTCGAAGATCTCAACGGAGTGATTTTCTCAGCCGATG
CTCTTTTACGATTCCTACGTTTTATAGTACTCTTAGTGAGGCTGGATCTT
CTTTTCTTGCCTGATGAACTGGAGGAAGATTTAGAGATTGTCGAATTCTT
GGATGAGAGATTTAACTGCCCAATGGGAATGCCTAGTGCTTGTGCATCCG
CTGCAAGGATACGTTTGGCTTCGTCAATGATCAATCTGCCAGCTTCCTGC
TCCGACAAGCCTTCTTTCCCACTCAACCATAAACATTTAGGTACTGATTT
ACCCACCATTTCAGCATCCTTTCCTTTTAGTTTGTTACTGTAAAACGGTG
TCGATTCACGAAGCAATTTAGAGATTTCTTTTTCACTTGCATTGGCTATG
GCACTCACAGTTTGAAATCCGTTCTGATAGAATAAACGAGCAGTGAAACG
ATTCAGTAACGATATGCGAACCAGATTACACAGGTCCCGGCAAACACCAA
ATGACAAACGACTTTGAAATTGCTCCAGTAAGACTTCTAAACATGACCAG
CCAAGTTTCTTACAAAACACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001863-exon-sc0000012-1491911889:1138497..1138674 | TCONS_00001863-exon-sc0000012-1491911889:1138497..1138674 | Clytia hemisphaerica | exon |
| TCONS_00001863-exon-sc0000012-1510915933:1138497..1138674 | TCONS_00001863-exon-sc0000012-1510915933:1138497..1138674 | Clytia hemisphaerica | exon |
| TCONS_00001863-exon-sc0000012-1575043694:1138497..1138674 | TCONS_00001863-exon-sc0000012-1575043694:1138497..1138674 | Clytia hemisphaerica | exon |
| TCONS_00001863-exon-sc0000012-1491911889:1138740..1140868 | TCONS_00001863-exon-sc0000012-1491911889:1138740..1140868 | Clytia hemisphaerica | exon |
| TCONS_00001863-exon-sc0000012-1510915933:1138740..1140868 | TCONS_00001863-exon-sc0000012-1510915933:1138740..1140868 | Clytia hemisphaerica | exon |
| TCONS_00001863-exon-sc0000012-1575043694:1138740..1140868 | TCONS_00001863-exon-sc0000012-1575043694:1138740..1140868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:1138497..1140868 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00001863 vs. Swiss-Prot (Human)
Match: DPOLQ (DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 5.635e-26 Identity = 54/133 (40.60%), Postives = 90/133 (67.67%), Query Frame = -3
Query: 1913 VFCKKLGWSCLEVLLEQFQSRLSFGVCRDLCNLVRISLLNRFTARLFYQNGFQTVSAIANASEKEISKLLRESTPFYSNK--LKGKDAEMVGKSVPKCLWLSGKEGLSEQEAGRLIIDEAKRILAADAQALGI 2305
VF +LGW +E+LL QFQ RL+FG+ R+LC+LVR+SLLN AR+ Y +GF TV+ +A A+ E+ +L+ + PF S + + ++ + + + +W++G++GL+E+EA LI++EA+ IL D +G+
Sbjct: 764 VFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFKSARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGV 896 HSP 2 Score: 113.62 bits (283), Expect = 1.690e-25 Identity = 67/205 (32.68%), Postives = 113/205 (55.12%), Query Frame = -3
Query: 5 IIDVASSKTLFLTFIQEWKAKSSFTVAFSCETHKPTSQTTSSKIGRPLRSARDVSTTSKPSAMSSTSNRL-LYTRDDLQLTGLAICWGKKDSYYISLQEDGVRHNELDDTALPPDVCQELPLPVRLKSIQSVLNQHA--SSTIMGFDLKEQLKIIYELCDTLLPKAVLKDPKVAHWLLEPSQREKNLFGITKQWLDEDHVSLTEG 610
IIDVAS + LF TFI+EW+ K F+++ +CE + + + ++ IG + A S P + + + DD + GLA+CWG +D+YY SLQ++ +H+E+ + +PP + L L R+ +QS L + + +++ +D + KI+ C L ++ +DPKVA WLL+P +E L I +L + + L EG
Sbjct: 1827 IIDVASDQNLFQTFIKEWRCKKRFSISLACEKIRSLTSSKTATIGSRFKQA------SSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQ-KHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQS-YEDPKVACWLLDPDSQEPTLHSIVTSFLPHE-LPLLEG 2022
The following BLAST results are available for this feature:
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