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TCONS_00001859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001859
Unique NameTCONS_00001859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length915

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001859 ID=TCONS_00001859|Name=TCONS_00001859|organism=Clytia hemisphaerica|type=transcript|length=915bp
GTcagcaaaaagttttttcaactttttcgtttttctattttcagaaaatt
atccGATACACAACAACAACAGTCACAAGTGGATAACGGAGAAATAAACG
CCTGTCGTGATAGCGGAAGAAAAATGATTGATCGTCAGGTAAGGTGTTCT
AAGGATTTGTAAGGATTAACTTGTTCACTTTGTTACCCCTTCTCAAAGTG
TGGCTTGGGATTTGATTTTGGGGTGTTGAGAATAAAGAAAATCGTGTTGT
TCCAAGTTATAtctatacacccctgtgtcacagacccactgagaccccag
ccccactggaaaatttggcaaaactttcgtccccggtgaaaaaaataccc
ttaaatttcagccccactgggaaattgactttgatttcatccccatttga
aattcaatgtttaaaaattatactccaaaCCCATCCCTAtgcactggatt
ttttaaccttggaacaatagaatttctatccacattggaatttcaatagg
agtttttatcccaactgaggaaaaaattccaccggggctgtgagacaggt
gtGTATCCATATATCTTGAGTTAACACAAATGTTACCAACTCCGGCTATT
ATTCTGCTAAAATGGCACACGTATGAATTTAAAACGACGTTAAAATGAGT
TTAGTAGGCTCACTGAAGAAACATGTATATAAACAGTTTGAGTTACGTAA
AACCCTATCATGTGGAGTAGCTCTCTGGGTTAACTGTGAGCTTAGCGTCC
ATTTTTGTTTgtccttttgttttgtttatttcgtGACGTCATCATAATGG
CGGCTCTATTGAGTGACTCGCAGTCAGTGTACTGCTGTGCTTCAAACAGG
TTTTTTTGTATTGCAATTGATTTGTAGACTAGAACTTAACCTCGTTAAAG
CTTGGCGGTGAGCTA
Run BLAST on NCBI

transcript from alignment at sc0000012:1014046..1014960+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001859 ID=TCONS_00001859|Name=TCONS_00001859|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at sc0000012:1014046..1014960+ (Clytia hemisphaerica)
GTcagcaaaaagttttttcaactttttcgtttttctattttcagaaaatt atccGATACACAACAACAACAGTCACAAGTGGATAACGGAGAAATAAACG CCTGTCGTGATAGCGGAAGAAAAATGATTGATCGTCAGGTAAGGTGTTCT AAGGATTTGTAAGGATTAACTTGTTCACTTTGTTACCCCTTCTCAAAGTG TGGCTTGGGATTTGATTTTGGGGTGTTGAGAATAAAGAAAATCGTGTTGT TCCAAGTTATAtctatacacccctgtgtcacagacccactgagaccccag ccccactggaaaatttggcaaaactttcgtccccggtgaaaaaaataccc ttaaatttcagccccactgggaaattgactttgatttcatccccatttga aattcaatgtttaaaaattatactccaaaCCCATCCCTAtgcactggatt ttttaaccttggaacaatagaatttctatccacattggaatttcaatagg agtttttatcccaactgaggaaaaaattccaccggggctgtgagacaggt gtGTATCCATATATCTTGAGTTAACACAAATGTTACCAACTCCGGCTATT ATTCTGCTAAAATGGCACACGTATGAATTTAAAACGACGTTAAAATGAGT TTAGTAGGCTCACTGAAGAAACATGTATATAAACAGTTTGAGTTACGTAA AACCCTATCATGTGGAGTAGCTCTCTGGGTTAACTGTGAGCTTAGCGTCC ATTTTTGTTTgtccttttgttttgtttatttcgtGACGTCATCATAATGG CGGCTCTATTGAGTGACTCGCAGTCAGTGTACTGCTGTGCTTCAAACAGG TTTTTTTGTATTGCAATTGATTTGTAGACTAGAACTTAACCTCGTTAAAG CTTGGCGGTGAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000980XLOC_000980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001859-exon-sc0000012-1491911889:1014046..1014960TCONS_00001859-exon-sc0000012-1491911889:1014046..1014960Clytia hemisphaericaexon
TCONS_00001859-exon-sc0000012-1510915933:1014046..1014960TCONS_00001859-exon-sc0000012-1510915933:1014046..1014960Clytia hemisphaericaexon
TCONS_00001859-exon-sc0000012-1575043694:1014046..1014960TCONS_00001859-exon-sc0000012-1575043694:1014046..1014960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1014046..1014960 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265797 0.259197 0.947751 2.29282 0.490497 0.383003 0.564765 0.711095 0.377418 0.32501 0.105053 0.554893 0.071536 0.369559 0.127732 0.227275 0.159065 0.0444148 0.17583 0.12212 0 0 0.0609185 0 0.217104 0.274718 0.0740998 0 0.144221 0.225627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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