TCONS_00001850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001850
Unique NameTCONS_00001850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001850 ID=TCONS_00001850|Name=TCONS_00001850|organism=Clytia hemisphaerica|type=transcript|length=1338bp
AATATTTCAAGACAAGGAACACAGCTCTCTAATTTTCGTACAATCACGTA
GCTtacaacaatttttttaattggtaAATCGAATCAAGTTGTTAAAAAAG
TGCCTGTTAAATTAGAAGACGGAAGAAAATCCTTAATTGAAGGCAATCAA
ATTTAGAGGTTTAAAATTTATACGAAACACACGTTGATTAATTGGCAGCA
AAGGACAAAAAATGGAATATATAAATTATACAGCAGAGCATCTTTGGCCG
CCACAATATTATTTAGGAGCAGAACACAGCGCAATAACCCATGGCTATCC
TCCACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCACATTCACAC
GACAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACGCATTATCCC
GATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTTAACAGAGGC
TAGAGTACAGGTATGGTTCCAAAATCGTCGTGCAAAGTTTCGTAAAACAA
GCGAGAAAAACAAACGGAAATCGAATTCTACGTCATCATCTtcatcaacc
aatcaaaatacagATCTTTCATCAACAGCCAATCAAATGGCAACTACAAA
CAATAACAACAATAGTACtataaataataacaataatggtgAAACAGTGA
TCGATAAACAATCGAATGAAGTCGATGAACAAATTCGATTGAAAAACGAT
TCAATCGAATCAACAGAAAAACAAATTCTCGATCATAACACACGATTACC
TGAAGACATAAACAATAAATATAACTCGACTGCTCCCCGGCTGACACACC
CACCGTACACCTTTCATACTTATCAAGGCACGTACTGTCCTTCATCATAT
GGCTCTATGGAGCCGCGCGTCGTAAATGGAGTCTCATACCCTGTATCTGT
TGAAGGTGTCAAGGGTGAAAGCTATGGCCGTAACACTCTAGTAAATAATG
GTGATTTAGACTGGCGGGCTTAGGAGCTACTAAAAATGCTTATATTTCTA
GTTTTTTTGCTATGTAAAtatcttaaaaagaaaattttatgaagaCGTGA
TATAACATAGAAAGCATTATTTCCTATTTATATCTTTATTAtggtttttg
aaaactttaatcGACACTTTAAATTGTTGAGGGTGTACCGtaaaattttg
tatattttagATGTATGTTTTAGAGGGATCATTTTTATCGGTTTTTATTA
TATTCCAAGTTAtctttttaccaaaaatataTACTATTTGATTTTTAGAA
CGTGTTGAGtaaaatttttatatgattGATTAATAATTTCTTGATATTCA
TAATGTAATCTTTAATTGACAAATCGTTTCAAAATATA
Run BLAST on NCBI

transcript from alignment at sc0000012:944748..947157+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001850 ID=TCONS_00001850|Name=TCONS_00001850|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at sc0000012:944748..947157+ (Clytia hemisphaerica)
AATATTTCAAGACAAGGAACACAGCTCTCTAATTTTCGTACAATCACGTA GCTtacaacaatttttttaattggtaAATCGAATCAAGTTGTTAAAAAAG TGCCTGTTAAATTAGAAGACGGAAGAAAATCCTTAATTGAAGGCAATCAA ATTTAGAGGTTTAAAATTTATACGAAACACACGTTGATTAATTGGCAGCA AAGGACAAAAAATGGAATATATAAATTATACAGCAGAGCATCTTTGGCCG CCACAATATTATTTAGGTAATAGATATTGACAAGTTTCAGAGTTTTGTCA TTTGCTGGTTAATGACATAGATCCGATGTTGAGATAAGATCCTTTATAAG GAATAGAGCGACAATATGTCTTATGTATTTTTGCGGTAGCGCGCTTTGCA ATGTTATCAGGTGAAAAATACGTATACACACATTCTTAATGACAGATATG ATGTTGTACAGTGACCTTTTTTGATAGTAACGAAATTCGTAAAAAAAGGG AACCGAGACGGGAGGGTGAGATAAACATCTCTGTGAACTGGTATTTGCGG TAGAAATGTTCTCAGCAAGACTGAGTCAATATTTGGTGATTTACCGGTCA CGTTTCTCACGTTTTGCACAGATCCTTTTTTAACGCCGCGATTTAACGTT AGAAATACGTCATATTGACATTTCATAACCAACAAGATAATTTCGGGAAA GTTATCAAATTAGCCCGAAATTCTATTTTGACAATCGAAGTCTTAACATT CTGTTCTAGTTCTGTCGGATTTTTTTATTGATACCAAAGTCTATTTACAA AAGATTCAATTTTCCAGGAGCAGAACACAGCGCAATAACCCATGGCTATC CTCCACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCACATTCACA CGACAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACGCATTATCC CGATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTTAACAGAGG CTAGAGTACAGGTAAGTTCTCATTtttaacctttaaaaaaatgcagTGCT CAAAACTAGCTTTTATTCTTTGAACGAAATTcataaaataaatttgacaa gattcttaaaatgtttctttagCAAAATTGAATACTGAATATTGACCAAG CAAATATCCTTAAGTATCTAAAGGCAAGCAAGTCTGCTTAAACATCTTTT GAAGACGGTTTGAATCTCCTTATAACTTTACTCATAGTTTACCGGTCATA ATTGAATACCCACCTAATATTCccgcaattttcatattctgTTGCGCTCG ATTCTTCCTGTTCTTAACAATCTTGTTGTTCCCAAAAAAGGGAAATGAGT TTTTCTCGTTAGTACGACGTTAGTACGAAATTTTTGCATGACAAAGAAGG GTATTTTATAAGTAAAAACGATTCATAGAATAACTGAACGCATTCGAATA ACAATCGAAATACTCAAATATTAGCTATAATTTTTTCCTTCGtctatttt ttcactttttatgtGTCCTTGTTTTTCCATAGGTATGGTTCCAAAATCGT CGTGCAAAGTTTCGTAAAACAAGCGAGAAAAACAAACGGAAATCGAATTC TACGTCATCATCTtcatcaaccaatcaaaatacagATCTTTCATCAACAG CCAATCAAATGGCAACTACAAACAATAACAACAATAGTACtataaataat aacaataatggtgAAACAGTGATCGATAAACAATCGAATGAAGTCGATGA ACAAATTCGATTGAAAAACGATTCAATCGAATCAACAGAAAAACAAATTC TCGATCATAACACACGATTACCTGAAGACATAAACAATAAATATAACTCG ACTGCTCCCCGGCTGACACACCCACCGTACACCTTTCATACTTATCAAGG CACGTACTGTCCTTCATCATATGGCTCTATGGAGCCGCGCGTCGTAAATG GAGTCTCATACCCTGTATCTGTTGAAGGTGTCAAGGGTGAAAGCTATGGC CGTAACACTCTAGTAAATAATGGTGATTTAGACTGGCGGGCTTAGGAGCT ACTAAAAATGCTTATATTTCTAGTTTTTTTGCTATGTAAAtatcttaaaa agaaaattttatgaagaCGTGATATAACATAGAAAGCATTATTTCCTATT TATATCTTTATTAtggtttttgaaaactttaatcGACACTTTAAATTGTT GAGGGTGTACCGtaaaattttgtatattttagATGTATGTTTTAGAGGGA TCATTTTTATCGGTTTTTATTATATTCCAAGTTAtctttttaccaaaaat ataTACTATTTGATTTTTAGAACGTGTTGAGtaaaatttttatatgattG ATTAATAATTTCTTGATATTCATAATGTAATCTTTAATTGACAAATCGTT TCAAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000977XLOC_000977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001850-exon-sc0000012-1491911889:944748..945013TCONS_00001850-exon-sc0000012-1491911889:944748..945013Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1510915933:944748..945013TCONS_00001850-exon-sc0000012-1510915933:944748..945013Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1575043694:944748..945013TCONS_00001850-exon-sc0000012-1575043694:944748..945013Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1491911889:945565..945758TCONS_00001850-exon-sc0000012-1491911889:945565..945758Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1510915933:945565..945758TCONS_00001850-exon-sc0000012-1510915933:945565..945758Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1575043694:945565..945758TCONS_00001850-exon-sc0000012-1575043694:945565..945758Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1491911889:946280..947157TCONS_00001850-exon-sc0000012-1491911889:946280..947157Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1510915933:946280..947157TCONS_00001850-exon-sc0000012-1510915933:946280..947157Clytia hemisphaericaexon
TCONS_00001850-exon-sc0000012-1575043694:946280..947157TCONS_00001850-exon-sc0000012-1575043694:946280..947157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:944748..947157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0306434 0.0355799 0.0348094 0.127131 0 0.161602 0.0378225 0 0 0 0 0.125395 0.0651119 0 0.0191489 24.4344 25.4492 0 0 18.0627 16.5562 6.88434 4.74865 6.79102 5.00486 0 0.578429 0.0697565 0
Blast
BLAST of TCONS_00001850 vs. Swiss-Prot (Human)
Match: DRGX (Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.424e-24
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 2
Query:  308 YARRGHRRNRTTFTRQQLEELEKLFDSTHYPDVFAREELASRISLTEARVQVWFQNRRAKFR 493
            + RR  RRNRTTFT QQLE LE +F  THYPDVF REELA +I+LTEARVQVWFQNRRAK+R
Sbjct:   28 FLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 89          
The following BLAST results are available for this feature:
BLAST of TCONS_00001850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRGX1.424e-2475.81Dorsal root ganglia homeobox protein OS=Homo sapie... [more]
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