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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001848 ID=TCONS_00001848|Name=TCONS_00001848|organism=Clytia hemisphaerica|type=transcript|length=2507bpRun BLAST on NCBI protein sequence of TCONS_00001848-protein >TCONS_00001848-protein ID=TCONS_00001848-protein|Name=TCONS_00001848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp MAEQSVIDSVNTGNPELDSKVKDWLKWDKNEQTSSEIQNLLKMKDYEALSRun BLAST on NCBI transcript from alignment at sc0000012:922169..933218+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001848 ID=TCONS_00001848|Name=TCONS_00001848|organism=Clytia hemisphaerica|type=transcript|length=11050bp|location=Sequence derived from alignment at sc0000012:922169..933218+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:922169..933218+ >TCONS_00001848 ID=TCONS_00001848|Name=TCONS_00001848|organism=Clytia hemisphaerica|type=CDS|length=35340bp|location=Sequence derived from alignment at sc0000012:922169..933218+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001848 vs. Swiss-Prot (Human)
Match: PGM2 (Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4) HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0 Identity = 311/599 (51.92%), Postives = 399/599 (66.61%), Query Frame = 2
Query: 74 NPELDSKVKDWLKWDKNEQTSSEIQNLLKMKDYEALSKCLLKRMEFGTAGLRSALGAGFSKMNDLTVIQASQGLCKYLIGQFEDIKERGVVIGHDARY------GSHRFARLSAAIFLHCGIKVYLYSDIVCTPFVPFGVVKYNCVAGIMVTASHNPKEDNGYKVYYSNGAQIIPPHDKGISDSIMANLEPLATSWDEDIHKTSPLCIDPLDEVMNDYMKTIQTHCHHRDVNKTSTYNITYTAMHGVGERFEIEAFKAFSLKPFFTTPEQAKPDPDFPTVKYPNPEEGKGALTLAMKTAEANNSSFIIANDPDADRLAIAEKNKDGAWKIFTGNEIGLLLGWWSFNKHKEQNPSLYPGDSVNMIHSTVSSMILQSIGKVEGFKVHETLTGFKWMGNVADELQKGKKHVLFAFEEAIGFMFGTQVLDKDGISAGAIISEMATYLNSKGKTVAEHLEELYQRYGMHISNNSYLICHSQPTIKSIFHRMRTME-NGSYPSKVGPFKVLGVRDLTGEGYDSSTPDKKPTLPTS-SSNMITFKFDEGCVATIRTSGTEPKIKYYSEISRQPGDSMSWEDAGKKIDELIEHLVQELLEPEKNQLQ 1846
+ LD + WL+WDKN T ++ L+ + E L KC RMEFGTAGLR+A+G G S+MNDLT+IQ +QG C+YL QF D+K++G+VI DAR S RFARL+A F+ GI VYL+SDI TPFVPF V AGIM+TASHNPK+DNGYKVY+ NGAQII PHDKGIS +I NLEP +WD+ + +SPL +P + NDY + ++ +C HR VN+ + +T++HGVG F AFKAF L P PEQ PDP+FPTVKYPNPEEGKG LTL+ A+ + ++ANDPDADRLA+AEK G W++F+GNE+G LLGWW F KE+N M+ STVSS IL++I EGF ETLTGFKWMGN A +L K VLFAFEEAIG+M VLDKDG+SA I +E+A++L +K ++++ L+ +Y YG HI+ SY ICH Q TIK +F +R + +YP G F++ +RDLT GYD S PDKK LPTS SS MITF F G VAT+RTSGTEPKIKYY+E+ PG+S E K+++EL+ + + +P+K LQ
Sbjct: 12 DARLDQETAQWLRWDKNSLTLEAVKRLIAEGNKEELRKCFGARMEFGTAGLRAAMGPGISRMNDLTIIQTTQGFCRYLEKQFSDLKQKGIVISFDARAHPSSGGSSRRFARLAATTFISQGIPVYLFSDITPTPFVPFTVSHLKLCAGIMITASHNPKQDNGYKVYWDNGAQIISPHDKGISQAIEENLEPWPQAWDDSLIDSSPLLHNPSASINNDYFEDLKKYCFHRSVNRETKVKFVHTSVHGVGHSFVQSAFKAFDLVPPEAVPEQKDPDPEFPTVKYPNPEEGKGVLTLSFALADKTKARIVLANDPDADRLAVAEKQDSGEWRVFSGNELGALLGWWLFTSWKEKNQDRSALKDTYMLSSTVSSKILRAIALKEGFHFEETLTGFKWMGNRAKQLIDQGKTVLFAFEEAIGYMCCPFVLDKDGVSAAVISAELASFLATKNLSLSQQLKAIYVEYGYHITKASYFICHDQETIKKLFENLRNYDGKNNYPKACGKFEISAIRDLT-TGYDDSQPDKKAVLPTSKSSQMITFTFANGGVATMRTSGTEPKIKYYAELCAPPGNSDP-EQLKKELNELVSAIEEHFFQPQKYNLQ 608 The following BLAST results are available for this feature:
BLAST of TCONS_00001848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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