TCONS_00001837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001837
Unique NameTCONS_00001837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001837 ID=TCONS_00001837|Name=TCONS_00001837|organism=Clytia hemisphaerica|type=transcript|length=992bp
TACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCggtttccac
ccaggacatacTGGTGGAGGTTGGGGTGCTCCTTATTGGTATAAAAAAAG
CGAAACGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAA
CGCATTATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacccagga
catacTGGCGGAGGATGGGGTGCTCCTTATTGGTACAAAAAAAGCGAGAC
AAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATT
ATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACT
GGCGGAGGATGGGGCGCTCCTTATTGGTATAAGAGATCAGGAATTGTTCG
TTCCACCCATACTGAGAATGTTGTTACATCACCATCAAAGAAATACATGG
TAGAAGGATACAACAATCTTGGTATAGGACATATTGGTAAAGATGAAGGA
GGCTGGGACCATGGATTTGGTGCTGGTCATGGCTTCGCGTGGGGTGGTCC
TACTGCCCATGGTATGGGTCCCATAGCTCACAATGAAAGTGGAGATTTTT
CAGCCGAACATAATGGACAATACGGCTTCAGTCATGGTTATAAAGGACGC
TTTGGGTCTGGCTTAGCAGGTTGGGGTAACCCTTCCACTGGGGATATGCT
TGATACAGACCAAGAAATAGGGGAAGGTGACTACGAACCTCGCCACCCGT
TAGTGGTGCCTCAAGGTCGTGGACATTTTCACCACAATCATAATCATGGT
ATCGGTTATGGCTTCAGAAGTGGGTCTTAAAGCAATGTTCAAGTAATTTG
AGAAAAGGAAGAAATTCAAACGTTAAGAACAATTTCTGGTTTGGTGATAA
GATACAATTTGATCTTGTTTTAAAGCGGAAACAGTAATAAGTAACGAAAT
ACTATTTCAATTTCAGTTACAAGTAGAAGTCCGTGTTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000012:791752..797893+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001837 ID=TCONS_00001837|Name=TCONS_00001837|organism=Clytia hemisphaerica|type=transcript|length=6142bp|location=Sequence derived from alignment at sc0000012:791752..797893+ (Clytia hemisphaerica)
TACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCggtttccac
ccaggacatacTGGTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTAAGT
CCTCCATTTACTCtaacaaaatcaataaacacCGTCACTCTAATACTGTT
CAGTTTCATTACTGTTGAAAAATATTACCCCTTACTATTACTATTTAGTA
ATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATttatttcaacaaaaa
tcaTTGATAATCATTAACTGATAAACCATCTTTAGAGATCTTCCCCTTGG
CGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGTGATCTATTGAGTAT
TGTTGGGATAGATTGGcaaatttttgaagaatatttttcataaaattgat
tttctgcCTTATAGAAAACGAACTCACACTCCACAAGTCAGACAATTAGT
ACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGC
CAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGACATACTG
GTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTAAGTCCTCCATTTACTC
ttacaaaatcaataaacacCGTCACTCTAATACTGTTCAGTTTCATTACT
GTTGAAAAATATTACCCCTTACTATTACTATTTAGTAATGGTAATGGAAA
TAAATTCCCTTAGAGCTCAAATttatttcaacaaaaatcaTTGATAATCA
TTAACTGATAAACAACCATCTTTAGAGATCTTCCCCTTGACGTGAAACGA
ATTTTTCGAAGGAATCTTCTTGTTGTATCTATTGAGCATTGTTGGGATAG
ATTGGcaaatttttgaagaatattttttataaaattgattttctgcCTTA
TAGAAAACGAACTCACACTCCACAAGTCAGACAATTAGTACCAACACATT
ATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccaggacatacT
GGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGTAAGATAATATCTATGA
TAAAATAAGGAATGTTCAACTTCAATTGCTTTCCAAAGCTAACAACGTCT
TGTTTTGTGCGTCAGAACTATGGGTTGTTCCTAATCGTTTCAGTTACTCC
GACGTCCTCAAAATAGTAGAATAATAAACTTGGTATAGTTTCTCGTAGTA
AATGATGAAATAGATTCACCGGCTACAATAGAATAAAGCGTACTTGAGTG
CATCTATTTTGAGTTACTTTCATTATTATGTACACTTTTAGGAAAAGCGA
TACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTTCCAACAC
ATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccaggacat
acTGGCGGAGGTTGGGGTTCCCCTTATTGGTACAAGTAAGTTAATATTTG
TGAtgtaaagcaaaaaaaagtttaactttCGCTGCTATCAAAAGCTAACA
AAGTCTTGTTTGGAAGCTGAAACGATACTAATATTTTAGATACGGCCTAC
GAGGTTTCGGTGTTGCAGAAATCAATCGTTTTTACTCGGAATTCGGGTAA
TATTACGGAATCCTAAAATTGGTTCGGTATCTGAAATAGACGTATTTGTA
CGTCAAAATCTGGGTGATGAAAAGATTACATTCTTGAATTTCGGAATTTT
TGCAAGATggctcaaaaacaaaatttttcggtttttcgaaaatcagaaCC
CTCGTACGCCCCGCCCCCTATACTACACTAAGAAGTATTTCCAgagattt
tgacattttagaaAATAGATTTAAGTACTAGAGACGCCTACCCATTACGT
CCTATGTATGGTCGATTGAGATTTCTTAAGCATTTTCCAATTGCTTATAT
cccatttttttagaaaagacGATGTATCACCAAAGCAGCTAGTACCAACA
CATTATTATGGTCCACCAAGTGCAGGATGGGGCGGTTTCCACCCAGGACA
CACTGGTGGAGGTTGGGGTGCTCCTTATTGGTATAAGTAAGTTTGAACGA
ACATACTTTGATTTCCTCGGCTATTTCGATGTTTAAACTTGCGCACAGCT
TTCTTGAAGAATCCTCTAAACATGTTAGAGCTTTTGCATATACTGGTAAT
GTGAGGAAAAGCATTGCCAAAATAATGCAATGCTTTAATAAAATACGATT
GGGAGATATTCTCTTTATATCTTTAGGTTATAATGTTTTTCTATTCGAGT
TGTAGCACTGAACTAAAGTTGGCAACACTATTCTGAATTATAATGGGAAC
TATATTATTTTACTTAAACCAACAGAAAACGAACTCACACTCCACAAGTT
AGACAATTAGTACCAACACACTATTATGGTCCACCAAGTGCAGGATGGGG
TGGTTTCCAGCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTATTGGT
ACAAGTAAGTTGTTTAGATTTCAAAGGCGTAGTCAGATAGTTTGAGATAT
TTGGTCTTTAGATTCCTCTTAATATTTCTGAGCAAACTTTTTTGTAAGCA
ATAGATCTCTCAACGTGGAAACCCTGTGTGAACCCATCTTCAACGTTTTC
AAAACatcgtttttcaaacttacaaAATCATTTTAGCAAAAAGAATTGGG
GGTTTACCgccaaactaaaaaaaatatacAGACCAAAAGTCTTTTACCGT
CTGGTAAGCCCTTCTAAAAAGGATCTACAAATGGCTAATAGACCTTTGTT
GCCTTTATCATAAAAGTCTAATATCAAAGTTTCAAGTCTAATATTTACCG
TTGTTTTCATATAAATAGAAAAAGCGAAACGAAAAATCCTGAAAAGACTC
ACTCTGCAAAACAATTAGTGCCAACGCATTATTATGGTCCACCAAGTGCG
GGATGGGGTggtttccacccaggacatacTGGCGGAGGATGGGGTGCTCC
TTATTGGTACAAGTAAGTTGAACATTTTGATCATCTTTGCATGGTAACCC
AAATCAAAGTTACTGCAAACATAGTTACCTAAAAGCTTCCTTTTCGAAGA
TTTTGACTTACTTGTGGCTCGTTCGCCTACCTTTTGTCAGGTAGTAGTTC
ATTTATCTACTGTATTTTCAAGTGGTCGTTGTAATTCGTGTCTTCACTTC
GTCATTTGTCTTTACAGAAAAAGCGAGACAAAGAATCCAGGAAAAACTCA
CTCTACAAAACAATTAGTACCAACGCATTATTATGGTCCACCAAGTGCAG
GATGGGGTGGTTTCCATCCAGGACATACTGGTGGAGGATGGGGCGCTCCT
TATTGGTACAAGTAAGTATACTGATACCTTTTGGTAGCCATTTACGACAA
TGATGACGAAAATGTTTTCAGTCTCGTCAAAATTTGCCATTTCTTAGAAA
GTGATGAGAAACTCATGTATCTAGTGATGTAGTATATAAGCTCAAGTAGA
CTGATCTGTATTAAGGAATAAGAATTATAATTATTTTGAAAGAGGATTTG
ccacaatacacctttccccttgatttcaattaaaaacgtttatatttttt
accattttaattttttcagaaaaagtgaGACCAAGAATCCAGGAAAAACA
CACTCTACAAAACAATTAGTACCAACACATTATTATGGTCCACCAAGTGC
AGGATGGGGTggtttccacccaggacatacTGGCGGTGGATGGGGCGCTC
CTTATTGGTATAAGTaagtcaattttaaaagttattttttgtgttttagc
GATCCTTAGCAAGCTTAAGTATCGATAgataaatcacgacgacggaagTT
TTTCCTCTATCCTTGTTCATTAACGCTGCGGATTTTTTCTTCAGGCTAAC
CTGAAAGCAAGGTAGATTTGCCCCGTGTAGTACATACAGTACATACAAGC
GGAGCTTCATTGTATAAACAATAACATAAGTTGATTTCTTTGAATGGTAA
GTCTAAGTTATGCTCTCAGGTTAGCCTGTAGAAAAGTTCCGCAGCGCGAA
AGAACAAGGCTAATGGAAAtccgtccgtcgtcgtgattcaTCTATCGTTA
TTTAACCTCATTGTTGtgctcaaataaaaaaagaaggtCAGCTTCCATAT
AAAAGCTCGTTATCATATTTTAGTTTCAGTACAATAGTTTTCTGTACAAG
GTTGACTTGAACCTGCTTTGGAATATTACACACTAGAGTCCGTCGTACAG
GCTAACTATCTTTGTCATGGTAATAAGTTATAACTAGTCCTCCTTTACCT
TACCTCAGAAAAAGCGAAACGAAGAATCCTGAAAAGACTCACTCTGCAAA
ACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTG
GTTTCCATCCAGGACATACTGGCGGAGGATGGGGCGCTCCTTATTGGTAT
AAGTAAGTGATTTATACCTAGTTTAgtgtatttttgtaaatttgaaaatt
tgttagaataaattcttaaaaaaataatcactttgtattattaattttgt
tgtGTCCCTTATAAATTACAATTTATACAATTATGCTTTTTTCATCATTA
ACAAACTCGAAATCACCTTGACCTTTATACTGCTGATCTTCTAACAGGTG
CTAAAAGTTTCTAACCAAACAAAATCACAGATAAGCACCATACTTTTATA
GGAGATCAGGAATTGTTCGTTCCACCCATACTGAGAATGTTGTTACATCA
CCATCAAAGAAATACATGGTAGAAGGATACAACAATCTTGGTATAGGACA
TATTGGTAAAGATGAAGGAGGCTGGGACCATGGCTTTGGTGCTGGTCATG
GCTTCGCGTGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCT
AGTTTAgtgtatttttgtaaatttgaaaatttgttagaataaattcttaa
aaaaataatcactttgtattattaattttgttgtGTCCCTTATAAATTAC
AATTTATACAATTATGCTTTTTTCATCATTAACAAACTCGAAATCACCTT
GACCTTTATACTGCTGATCTTCTAACAGGTGCTAAAAGTTTCTAACCAAA
CAAAATCACAGATAAGCACCATACTTTTATAGGAGATCAGGAATTGTTCG
TTCCACCCATACTGAGAATGTTGTTACATCACCATCAAAGAAATACATGG
TAGAAGGATACAACAATCTTGGTATAGGACATATTGGTAAAGATGAAGGA
GGCTGGGACCATGGATTTGGTGCTGGTCATGGCTTCGCGTGGGGTGGTCC
TACTGCCCATGGTATGGGTCCCATAGCTCACAATGAAAGTGGAGATTTTT
CAGCCGAACATAATGGACAATACGGCTTCAGTCATGGTTATAAAGGACGC
TTTGGGTCTGGCTTAGCAGGTTGGGGTAACCCTTCCACTGGGGATATGCT
TGATACAGACCAAGAAATAGGGGAAGGTGACTACGAACCTCGCCACCCGT
TAGTGGTGCCTCAAGGTCGTGGACATTTTCACCACAATCATAATCATGGT
ATCGGTTATGGCTTCAGAAGTGGGTCTTAAAGCAATGTTCAAGTAATTTG
AGAAAAGGAAGAAATTCAAACGTTAAGAACAATTTCTGGTTTGGTGATAA
GATACAATTTGATCTTGTTTTAAAGCGGAAACAGTAATAAGTAACGAAAT
ACTATTTCAATTTCAGTTACAAGTAGAAGTCCGTGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001837-exon-sc0000012-1491911889:791752..791820TCONS_00001837-exon-sc0000012-1491911889:791752..791820Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:791752..791820TCONS_00001837-exon-sc0000012-1510915933:791752..791820Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:791752..791820TCONS_00001837-exon-sc0000012-1575043694:791752..791820Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:792859..792883TCONS_00001837-exon-sc0000012-1491911889:792859..792883Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:792859..792883TCONS_00001837-exon-sc0000012-1510915933:792859..792883Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:792859..792883TCONS_00001837-exon-sc0000012-1575043694:792859..792883Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:794670..794813TCONS_00001837-exon-sc0000012-1491911889:794670..794813Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:794670..794813TCONS_00001837-exon-sc0000012-1510915933:794670..794813Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:794670..794813TCONS_00001837-exon-sc0000012-1575043694:794670..794813Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:795019..795125TCONS_00001837-exon-sc0000012-1491911889:795019..795125Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:795019..795125TCONS_00001837-exon-sc0000012-1510915933:795019..795125Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:795019..795125TCONS_00001837-exon-sc0000012-1575043694:795019..795125Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:796217..796253TCONS_00001837-exon-sc0000012-1491911889:796217..796253Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:796217..796253TCONS_00001837-exon-sc0000012-1510915933:796217..796253Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:796217..796253TCONS_00001837-exon-sc0000012-1575043694:796217..796253Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:797284..797893TCONS_00001837-exon-sc0000012-1491911889:797284..797893Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:797284..797893TCONS_00001837-exon-sc0000012-1510915933:797284..797893Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:797284..797893TCONS_00001837-exon-sc0000012-1575043694:797284..797893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:791752..797893 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275442	0.66395	0	0	0	0	0	0	0	0.119942	0	0	0.511833	0	0.268645	1.48315	0	0.481883	0	0	0	0.445384	2.69562	0.766269	0	0	0.466928	0.141677	0.281057	0.189857
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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