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TCONS_00001837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001837
Unique NameTCONS_00001837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001837 ID=TCONS_00001837|Name=TCONS_00001837|organism=Clytia hemisphaerica|type=transcript|length=992bp
TACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCggtttccac
ccaggacatacTGGTGGAGGTTGGGGTGCTCCTTATTGGTATAAAAAAAG
CGAAACGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAA
CGCATTATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacccagga
catacTGGCGGAGGATGGGGTGCTCCTTATTGGTACAAAAAAAGCGAGAC
AAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATT
ATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACT
GGCGGAGGATGGGGCGCTCCTTATTGGTATAAGAGATCAGGAATTGTTCG
TTCCACCCATACTGAGAATGTTGTTACATCACCATCAAAGAAATACATGG
TAGAAGGATACAACAATCTTGGTATAGGACATATTGGTAAAGATGAAGGA
GGCTGGGACCATGGATTTGGTGCTGGTCATGGCTTCGCGTGGGGTGGTCC
TACTGCCCATGGTATGGGTCCCATAGCTCACAATGAAAGTGGAGATTTTT
CAGCCGAACATAATGGACAATACGGCTTCAGTCATGGTTATAAAGGACGC
TTTGGGTCTGGCTTAGCAGGTTGGGGTAACCCTTCCACTGGGGATATGCT
TGATACAGACCAAGAAATAGGGGAAGGTGACTACGAACCTCGCCACCCGT
TAGTGGTGCCTCAAGGTCGTGGACATTTTCACCACAATCATAATCATGGT
ATCGGTTATGGCTTCAGAAGTGGGTCTTAAAGCAATGTTCAAGTAATTTG
AGAAAAGGAAGAAATTCAAACGTTAAGAACAATTTCTGGTTTGGTGATAA
GATACAATTTGATCTTGTTTTAAAGCGGAAACAGTAATAAGTAACGAAAT
ACTATTTCAATTTCAGTTACAAGTAGAAGTCCGTGTTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000012:791752..797893+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001837 ID=TCONS_00001837|Name=TCONS_00001837|organism=Clytia hemisphaerica|type=transcript|length=6142bp|location=Sequence derived from alignment at sc0000012:791752..797893+ (Clytia hemisphaerica)
TACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCggtttccac ccaggacatacTGGTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTAAGT CCTCCATTTACTCtaacaaaatcaataaacacCGTCACTCTAATACTGTT CAGTTTCATTACTGTTGAAAAATATTACCCCTTACTATTACTATTTAGTA ATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATttatttcaacaaaaa tcaTTGATAATCATTAACTGATAAACCATCTTTAGAGATCTTCCCCTTGG CGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGTGATCTATTGAGTAT TGTTGGGATAGATTGGcaaatttttgaagaatatttttcataaaattgat tttctgcCTTATAGAAAACGAACTCACACTCCACAAGTCAGACAATTAGT ACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGC CAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGACATACTG GTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTAAGTCCTCCATTTACTC ttacaaaatcaataaacacCGTCACTCTAATACTGTTCAGTTTCATTACT GTTGAAAAATATTACCCCTTACTATTACTATTTAGTAATGGTAATGGAAA TAAATTCCCTTAGAGCTCAAATttatttcaacaaaaatcaTTGATAATCA TTAACTGATAAACAACCATCTTTAGAGATCTTCCCCTTGACGTGAAACGA ATTTTTCGAAGGAATCTTCTTGTTGTATCTATTGAGCATTGTTGGGATAG ATTGGcaaatttttgaagaatattttttataaaattgattttctgcCTTA TAGAAAACGAACTCACACTCCACAAGTCAGACAATTAGTACCAACACATT ATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccaggacatacT GGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGTAAGATAATATCTATGA TAAAATAAGGAATGTTCAACTTCAATTGCTTTCCAAAGCTAACAACGTCT TGTTTTGTGCGTCAGAACTATGGGTTGTTCCTAATCGTTTCAGTTACTCC GACGTCCTCAAAATAGTAGAATAATAAACTTGGTATAGTTTCTCGTAGTA AATGATGAAATAGATTCACCGGCTACAATAGAATAAAGCGTACTTGAGTG CATCTATTTTGAGTTACTTTCATTATTATGTACACTTTTAGGAAAAGCGA TACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTTCCAACAC ATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccaggacat acTGGCGGAGGTTGGGGTTCCCCTTATTGGTACAAGTAAGTTAATATTTG TGAtgtaaagcaaaaaaaagtttaactttCGCTGCTATCAAAAGCTAACA AAGTCTTGTTTGGAAGCTGAAACGATACTAATATTTTAGATACGGCCTAC GAGGTTTCGGTGTTGCAGAAATCAATCGTTTTTACTCGGAATTCGGGTAA TATTACGGAATCCTAAAATTGGTTCGGTATCTGAAATAGACGTATTTGTA CGTCAAAATCTGGGTGATGAAAAGATTACATTCTTGAATTTCGGAATTTT TGCAAGATggctcaaaaacaaaatttttcggtttttcgaaaatcagaaCC CTCGTACGCCCCGCCCCCTATACTACACTAAGAAGTATTTCCAgagattt tgacattttagaaAATAGATTTAAGTACTAGAGACGCCTACCCATTACGT CCTATGTATGGTCGATTGAGATTTCTTAAGCATTTTCCAATTGCTTATAT cccatttttttagaaaagacGATGTATCACCAAAGCAGCTAGTACCAACA CATTATTATGGTCCACCAAGTGCAGGATGGGGCGGTTTCCACCCAGGACA CACTGGTGGAGGTTGGGGTGCTCCTTATTGGTATAAGTAAGTTTGAACGA ACATACTTTGATTTCCTCGGCTATTTCGATGTTTAAACTTGCGCACAGCT TTCTTGAAGAATCCTCTAAACATGTTAGAGCTTTTGCATATACTGGTAAT GTGAGGAAAAGCATTGCCAAAATAATGCAATGCTTTAATAAAATACGATT GGGAGATATTCTCTTTATATCTTTAGGTTATAATGTTTTTCTATTCGAGT TGTAGCACTGAACTAAAGTTGGCAACACTATTCTGAATTATAATGGGAAC TATATTATTTTACTTAAACCAACAGAAAACGAACTCACACTCCACAAGTT AGACAATTAGTACCAACACACTATTATGGTCCACCAAGTGCAGGATGGGG TGGTTTCCAGCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTATTGGT ACAAGTAAGTTGTTTAGATTTCAAAGGCGTAGTCAGATAGTTTGAGATAT TTGGTCTTTAGATTCCTCTTAATATTTCTGAGCAAACTTTTTTGTAAGCA ATAGATCTCTCAACGTGGAAACCCTGTGTGAACCCATCTTCAACGTTTTC AAAACatcgtttttcaaacttacaaAATCATTTTAGCAAAAAGAATTGGG GGTTTACCgccaaactaaaaaaaatatacAGACCAAAAGTCTTTTACCGT CTGGTAAGCCCTTCTAAAAAGGATCTACAAATGGCTAATAGACCTTTGTT GCCTTTATCATAAAAGTCTAATATCAAAGTTTCAAGTCTAATATTTACCG TTGTTTTCATATAAATAGAAAAAGCGAAACGAAAAATCCTGAAAAGACTC ACTCTGCAAAACAATTAGTGCCAACGCATTATTATGGTCCACCAAGTGCG GGATGGGGTggtttccacccaggacatacTGGCGGAGGATGGGGTGCTCC TTATTGGTACAAGTAAGTTGAACATTTTGATCATCTTTGCATGGTAACCC AAATCAAAGTTACTGCAAACATAGTTACCTAAAAGCTTCCTTTTCGAAGA TTTTGACTTACTTGTGGCTCGTTCGCCTACCTTTTGTCAGGTAGTAGTTC ATTTATCTACTGTATTTTCAAGTGGTCGTTGTAATTCGTGTCTTCACTTC GTCATTTGTCTTTACAGAAAAAGCGAGACAAAGAATCCAGGAAAAACTCA CTCTACAAAACAATTAGTACCAACGCATTATTATGGTCCACCAAGTGCAG GATGGGGTGGTTTCCATCCAGGACATACTGGTGGAGGATGGGGCGCTCCT TATTGGTACAAGTAAGTATACTGATACCTTTTGGTAGCCATTTACGACAA TGATGACGAAAATGTTTTCAGTCTCGTCAAAATTTGCCATTTCTTAGAAA GTGATGAGAAACTCATGTATCTAGTGATGTAGTATATAAGCTCAAGTAGA CTGATCTGTATTAAGGAATAAGAATTATAATTATTTTGAAAGAGGATTTG ccacaatacacctttccccttgatttcaattaaaaacgtttatatttttt accattttaattttttcagaaaaagtgaGACCAAGAATCCAGGAAAAACA CACTCTACAAAACAATTAGTACCAACACATTATTATGGTCCACCAAGTGC AGGATGGGGTggtttccacccaggacatacTGGCGGTGGATGGGGCGCTC CTTATTGGTATAAGTaagtcaattttaaaagttattttttgtgttttagc GATCCTTAGCAAGCTTAAGTATCGATAgataaatcacgacgacggaagTT TTTCCTCTATCCTTGTTCATTAACGCTGCGGATTTTTTCTTCAGGCTAAC CTGAAAGCAAGGTAGATTTGCCCCGTGTAGTACATACAGTACATACAAGC GGAGCTTCATTGTATAAACAATAACATAAGTTGATTTCTTTGAATGGTAA GTCTAAGTTATGCTCTCAGGTTAGCCTGTAGAAAAGTTCCGCAGCGCGAA AGAACAAGGCTAATGGAAAtccgtccgtcgtcgtgattcaTCTATCGTTA TTTAACCTCATTGTTGtgctcaaataaaaaaagaaggtCAGCTTCCATAT AAAAGCTCGTTATCATATTTTAGTTTCAGTACAATAGTTTTCTGTACAAG GTTGACTTGAACCTGCTTTGGAATATTACACACTAGAGTCCGTCGTACAG GCTAACTATCTTTGTCATGGTAATAAGTTATAACTAGTCCTCCTTTACCT TACCTCAGAAAAAGCGAAACGAAGAATCCTGAAAAGACTCACTCTGCAAA ACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTG GTTTCCATCCAGGACATACTGGCGGAGGATGGGGCGCTCCTTATTGGTAT AAGTAAGTGATTTATACCTAGTTTAgtgtatttttgtaaatttgaaaatt tgttagaataaattcttaaaaaaataatcactttgtattattaattttgt tgtGTCCCTTATAAATTACAATTTATACAATTATGCTTTTTTCATCATTA ACAAACTCGAAATCACCTTGACCTTTATACTGCTGATCTTCTAACAGGTG CTAAAAGTTTCTAACCAAACAAAATCACAGATAAGCACCATACTTTTATA GGAGATCAGGAATTGTTCGTTCCACCCATACTGAGAATGTTGTTACATCA CCATCAAAGAAATACATGGTAGAAGGATACAACAATCTTGGTATAGGACA TATTGGTAAAGATGAAGGAGGCTGGGACCATGGCTTTGGTGCTGGTCATG GCTTCGCGTGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCT AGTTTAgtgtatttttgtaaatttgaaaatttgttagaataaattcttaa aaaaataatcactttgtattattaattttgttgtGTCCCTTATAAATTAC AATTTATACAATTATGCTTTTTTCATCATTAACAAACTCGAAATCACCTT GACCTTTATACTGCTGATCTTCTAACAGGTGCTAAAAGTTTCTAACCAAA CAAAATCACAGATAAGCACCATACTTTTATAGGAGATCAGGAATTGTTCG TTCCACCCATACTGAGAATGTTGTTACATCACCATCAAAGAAATACATGG TAGAAGGATACAACAATCTTGGTATAGGACATATTGGTAAAGATGAAGGA GGCTGGGACCATGGATTTGGTGCTGGTCATGGCTTCGCGTGGGGTGGTCC TACTGCCCATGGTATGGGTCCCATAGCTCACAATGAAAGTGGAGATTTTT CAGCCGAACATAATGGACAATACGGCTTCAGTCATGGTTATAAAGGACGC TTTGGGTCTGGCTTAGCAGGTTGGGGTAACCCTTCCACTGGGGATATGCT TGATACAGACCAAGAAATAGGGGAAGGTGACTACGAACCTCGCCACCCGT TAGTGGTGCCTCAAGGTCGTGGACATTTTCACCACAATCATAATCATGGT ATCGGTTATGGCTTCAGAAGTGGGTCTTAAAGCAATGTTCAAGTAATTTG AGAAAAGGAAGAAATTCAAACGTTAAGAACAATTTCTGGTTTGGTGATAA GATACAATTTGATCTTGTTTTAAAGCGGAAACAGTAATAAGTAACGAAAT ACTATTTCAATTTCAGTTACAAGTAGAAGTCCGTGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001837-exon-sc0000012-1491911889:791752..791820TCONS_00001837-exon-sc0000012-1491911889:791752..791820Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:791752..791820TCONS_00001837-exon-sc0000012-1510915933:791752..791820Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:791752..791820TCONS_00001837-exon-sc0000012-1575043694:791752..791820Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:792859..792883TCONS_00001837-exon-sc0000012-1491911889:792859..792883Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:792859..792883TCONS_00001837-exon-sc0000012-1510915933:792859..792883Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:792859..792883TCONS_00001837-exon-sc0000012-1575043694:792859..792883Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:794670..794813TCONS_00001837-exon-sc0000012-1491911889:794670..794813Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:794670..794813TCONS_00001837-exon-sc0000012-1510915933:794670..794813Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:794670..794813TCONS_00001837-exon-sc0000012-1575043694:794670..794813Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:795019..795125TCONS_00001837-exon-sc0000012-1491911889:795019..795125Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:795019..795125TCONS_00001837-exon-sc0000012-1510915933:795019..795125Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:795019..795125TCONS_00001837-exon-sc0000012-1575043694:795019..795125Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:796217..796253TCONS_00001837-exon-sc0000012-1491911889:796217..796253Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:796217..796253TCONS_00001837-exon-sc0000012-1510915933:796217..796253Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:796217..796253TCONS_00001837-exon-sc0000012-1575043694:796217..796253Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1491911889:797284..797893TCONS_00001837-exon-sc0000012-1491911889:797284..797893Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1510915933:797284..797893TCONS_00001837-exon-sc0000012-1510915933:797284..797893Clytia hemisphaericaexon
TCONS_00001837-exon-sc0000012-1575043694:797284..797893TCONS_00001837-exon-sc0000012-1575043694:797284..797893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:791752..797893 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275442 0.66395 0 0 0 0 0 0 0 0.119942 0 0 0.511833 0 0.268645 1.48315 0 0.481883 0 0 0 0.445384 2.69562 0.766269 0 0 0.466928 0.141677 0.281057 0.189857
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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