TCONS_00001835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001835
Unique NameTCONS_00001835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001835 ID=TCONS_00001835|Name=TCONS_00001835|organism=Clytia hemisphaerica|type=transcript|length=906bp
CATCGAAGCTTTAGAAGACGCCGAAACTCCAAAGTCGAGACATAGACGAC
AATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTggt
ttccacccaggacatacTGGCGGTGGTTGGGGTGCTCCTTATTGGTACAA
aaaagacGATGTATCACCAAAGCAGCTAGTACCAACACATTATTATGGTC
CACCAAGTGCAGGATGGGGCGGTTTCCACCCAGGACACACTGGTGGAGGT
TGGGGTGCTCCTTATTGGTATAAAAAAAGCGAAACGAAAAATCCTGAAAA
GACTCACTCTGCAAAACAATTAGTGCCAACGCATTATTATGGTCCACCAA
GTGCGGGATGGGGTggtttccacccaggacatacTGGCGGAGGATGGGGT
GCTCCTTATTGGTACAAAAAAAGCGAGACAAAGAATCCAGGAAAAACTCA
CTCTACAAAACAATTAGTACCAACGCATTATTATGGTCCACCAAGTGCAG
GATGGGGTGGTTTCCATCCAGGACATACTGGTGGAGGATGGGGCGCTCCT
TATTGGTACAAaaaaagtgaGACCAAGAATCCAGGAAAAACACACTCTAC
AAAACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGG
GTggtttccacccaggacatacTGGCGGTGGATGGGGCGCTCCTTATTGG
TATAAAAAAAGCGAAACGAAGAATCCTGAAAAGACTCACTCTGCAAAACA
ATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTT
TCCATCCAGGACATACTGGCGGAGGATGGGGCGCTCCTTATTGGTATAAG
TAAGTGATTTATACCTAGTTTAgtgtatttttgtaaatttgaaaatttgt
tagaat
Run BLAST on NCBI

transcript from alignment at sc0000012:791188..796310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001835 ID=TCONS_00001835|Name=TCONS_00001835|organism=Clytia hemisphaerica|type=transcript|length=5123bp|location=Sequence derived from alignment at sc0000012:791188..796310+ (Clytia hemisphaerica)
CATCGAAGCTTTAGAAGACGCCGAAACTCCAAAGTCGAGACATAGACGAC
AATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTggt
ttccacccaggacatacTGGCGGTGGTTGGGGTGCTCCTTATTGGTACAA
GTAAGTTTACCGATTTTATGACAGCTGTTTATGCATGACGTGTTGATTGA
TTAATAATATGTTTTCTTCTCCGTATATGAAGCTACTACTATGACTGTTT
CATCGACTTTGATAACATAATGAGCTCTTCAGGGAAACTAATTCATAaca
tttcccatgttcaaacaAGTATTCCAGGAATTAGGGAGTTCCCCTATTAA
GCTTTTGGCGAATCTGTCTCAAAAATGATGCTTTTTTCTCGTTTTAAACT
GATGCctgtttgacatttttaaatatCTATACCGACCAATCCAAGAGATT
AAGCATTGTttaagaaatctaaaaattttgggaTTTTAGCTACTATTGTT
TAAcactaatttttcttttttattcgtAGAAAACGAACTCACACTCCACA
AGTCAGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGAT
GGGGCggtttccacccaggacatacTGGTGGAGGTTGGGGTGCTCCTTAC
TGGTACAAGTAAGTCCTCCATTTACTCtaacaaaatcaataaacacCGTC
ACTCTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCTTACT
ATTACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATt
tatttcaacaaaaatcaTTGATAATCATTAACTGATAAACCATCTTTAGA
GATCTTCCCCTTGGCGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGT
GATCTATTGAGTATTGTTGGGATAGATTGGcaaatttttgaagaatattt
ttcataaaattgattttctgcCTTATAGAAAACGAACTCACACTCCACAA
GTCAGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATG
GGGTGGTTTCCAGCCAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTAAG
TCCTCCATTTACTCttacaaaatcaataaacacCGTCACTCTAATACTGT
TCAGTTTCATTACTGTTGAAAAATATTACCCCTTACTATTACTATTTAGT
AATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATttatttcaacaaaa
atcaTTGATAATCATTAACTGATAAACAACCATCTTTAGAGATCTTCCCC
TTGACGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGTATCTATTGAG
CATTGTTGGGATAGATTGGcaaatttttgaagaatattttttataaaatt
gattttctgcCTTATAGAAAACGAACTCACACTCCACAAGTCAGACAATT
AGTACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttcc
acccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGTAA
GATAATATCTATGATAAAATAAGGAATGTTCAACTTCAATTGCTTTCCAA
AGCTAACAACGTCTTGTTTTGTGCGTCAGAACTATGGGTTGTTCCTAATC
GTTTCAGTTACTCCGACGTCCTCAAAATAGTAGAATAATAAACTTGGTAT
AGTTTCTCGTAGTAAATGATGAAATAGATTCACCGGCTACAATAGAATAA
AGCGTACTTGAGTGCATCTATTTTGAGTTACTTTCATTATTATGTACACT
TTTAGGAAAAGCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAACA
ATTAGTTCCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtt
tccacccaggacatacTGGCGGAGGTTGGGGTTCCCCTTATTGGTACAAG
TAAGTTAATATTTGTGAtgtaaagcaaaaaaaagtttaactttCGCTGCT
ATCAAAAGCTAACAAAGTCTTGTTTGGAAGCTGAAACGATACTAATATTT
TAGATACGGCCTACGAGGTTTCGGTGTTGCAGAAATCAATCGTTTTTACT
CGGAATTCGGGTAATATTACGGAATCCTAAAATTGGTTCGGTATCTGAAA
TAGACGTATTTGTACGTCAAAATCTGGGTGATGAAAAGATTACATTCTTG
AATTTCGGAATTTTTGCAAGATggctcaaaaacaaaatttttcggttttt
cgaaaatcagaaCCCTCGTACGCCCCGCCCCCTATACTACACTAAGAAGT
ATTTCCAgagattttgacattttagaaAATAGATTTAAGTACTAGAGACG
CCTACCCATTACGTCCTATGTATGGTCGATTGAGATTTCTTAAGCATTTT
CCAATTGCTTATATcccatttttttagaaaagacGATGTATCACCAAAGC
AGCTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCGGT
TTCCACCCAGGACACACTGGTGGAGGTTGGGGTGCTCCTTATTGGTATAA
GTAAGTTTGAACGAACATACTTTGATTTCCTCGGCTATTTCGATGTTTAA
ACTTGCGCACAGCTTTCTTGAAGAATCCTCTAAACATGTTAGAGCTTTTG
CATATACTGGTAATGTGAGGAAAAGCATTGCCAAAATAATGCAATGCTTT
AATAAAATACGATTGGGAGATATTCTCTTTATATCTTTAGGTTATAATGT
TTTTCTATTCGAGTTGTAGCACTGAACTAAAGTTGGCAACACTATTCTGA
ATTATAATGGGAACTATATTATTTTACTTAAACCAACAGAAAACGAACTC
ACACTCCACAAGTTAGACAATTAGTACCAACACACTATTATGGTCCACCA
AGTGCAGGATGGGGTGGTTTCCAGCCAGGACATACTGGTGGAGGTTGGGG
TGCTCCTTATTGGTACAAGTAAGTTGTTTAGATTTCAAAGGCGTAGTCAG
ATAGTTTGAGATATTTGGTCTTTAGATTCCTCTTAATATTTCTGAGCAAA
CTTTTTTGTAAGCAATAGATCTCTCAACGTGGAAACCCTGTGTGAACCCA
TCTTCAACGTTTTCAAAACatcgtttttcaaacttacaaAATCATTTTAG
CAAAAAGAATTGGGGGTTTACCgccaaactaaaaaaaatatacAGACCAA
AAGTCTTTTACCGTCTGGTAAGCCCTTCTAAAAAGGATCTACAAATGGCT
AATAGACCTTTGTTGCCTTTATCATAAAAGTCTAATATCAAAGTTTCAAG
TCTAATATTTACCGTTGTTTTCATATAAATAGAAAAAGCGAAACGAAAAA
TCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAACGCATTATTATG
GTCCACCAAGTGCGGGATGGGGTggtttccacccaggacatacTGGCGGA
GGATGGGGTGCTCCTTATTGGTACAAGTAAGTTGAACATTTTGATCATCT
TTGCATGGTAACCCAAATCAAAGTTACTGCAAACATAGTTACCTAAAAGC
TTCCTTTTCGAAGATTTTGACTTACTTGTGGCTCGTTCGCCTACCTTTTG
TCAGGTAGTAGTTCATTTATCTACTGTATTTTCAAGTGGTCGTTGTAATT
CGTGTCTTCACTTCGTCATTTGTCTTTACAGAAAAAGCGAGACAAAGAAT
CCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATTATTATGG
TCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGTGGAG
GATGGGGCGCTCCTTATTGGTACAAGTAAGTATACTGATACCTTTTGGTA
GCCATTTACGACAATGATGACGAAAATGTTTTCAGTCTCGTCAAAATTTG
CCATTTCTTAGAAAGTGATGAGAAACTCATGTATCTAGTGATGTAGTATA
TAAGCTCAAGTAGACTGATCTGTATTAAGGAATAAGAATTATAATTATTT
TGAAAGAGGATTTGccacaatacacctttccccttgatttcaattaaaaa
cgtttatattttttaccattttaattttttcagaaaaagtgaGACCAAGA
ATCCAGGAAAAACACACTCTACAAAACAATTAGTACCAACACATTATTAT
GGTCCACCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGCGG
TGGATGGGGCGCTCCTTATTGGTATAAGTaagtcaattttaaaagttatt
ttttgtgttttagcGATCCTTAGCAAGCTTAAGTATCGATAgataaatca
cgacgacggaagTTTTTCCTCTATCCTTGTTCATTAACGCTGCGGATTTT
TTCTTCAGGCTAACCTGAAAGCAAGGTAGATTTGCCCCGTGTAGTACATA
CAGTACATACAAGCGGAGCTTCATTGTATAAACAATAACATAAGTTGATT
TCTTTGAATGGTAAGTCTAAGTTATGCTCTCAGGTTAGCCTGTAGAAAAG
TTCCGCAGCGCGAAAGAACAAGGCTAATGGAAAtccgtccgtcgtcgtga
ttcaTCTATCGTTATTTAACCTCATTGTTGtgctcaaataaaaaaagaag
gtCAGCTTCCATATAAAAGCTCGTTATCATATTTTAGTTTCAGTACAATA
GTTTTCTGTACAAGGTTGACTTGAACCTGCTTTGGAATATTACACACTAG
AGTCCGTCGTACAGGCTAACTATCTTTGTCATGGTAATAAGTTATAACTA
GTCCTCCTTTACCTTACCTCAGAAAAAGCGAAACGAAGAATCCTGAAAAG
ACTCACTCTGCAAAACAATTAGTACCAACACATTATTATGGTCCACCAAG
TGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGGAGGATGGGGCG
CTCCTTATTGGTATAAGTAAGTGATTTATACCTAGTTTAgtgtatttttg
taaatttgaaaatttgttagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001835-exon-sc0000012-1491911889:791188..791337TCONS_00001835-exon-sc0000012-1491911889:791188..791337Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1510915933:791188..791337TCONS_00001835-exon-sc0000012-1510915933:791188..791337Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1575043694:791188..791337TCONS_00001835-exon-sc0000012-1575043694:791188..791337Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1491911889:793765..793887TCONS_00001835-exon-sc0000012-1491911889:793765..793887Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1510915933:793765..793887TCONS_00001835-exon-sc0000012-1510915933:793765..793887Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1575043694:793765..793887TCONS_00001835-exon-sc0000012-1575043694:793765..793887Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1491911889:794670..794813TCONS_00001835-exon-sc0000012-1491911889:794670..794813Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1510915933:794670..794813TCONS_00001835-exon-sc0000012-1510915933:794670..794813Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1575043694:794670..794813TCONS_00001835-exon-sc0000012-1575043694:794670..794813Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1491911889:795019..795162TCONS_00001835-exon-sc0000012-1491911889:795019..795162Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1510915933:795019..795162TCONS_00001835-exon-sc0000012-1510915933:795019..795162Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1575043694:795019..795162TCONS_00001835-exon-sc0000012-1575043694:795019..795162Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1491911889:795421..795564TCONS_00001835-exon-sc0000012-1491911889:795421..795564Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1510915933:795421..795564TCONS_00001835-exon-sc0000012-1510915933:795421..795564Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1575043694:795421..795564TCONS_00001835-exon-sc0000012-1575043694:795421..795564Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1491911889:796110..796310TCONS_00001835-exon-sc0000012-1491911889:796110..796310Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1510915933:796110..796310TCONS_00001835-exon-sc0000012-1510915933:796110..796310Clytia hemisphaericaexon
TCONS_00001835-exon-sc0000012-1575043694:796110..796310TCONS_00001835-exon-sc0000012-1575043694:796110..796310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:791188..796310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.124512	0	0	2.69617e-05	0	0	0	0	1.19303	0	0	0.753794	0	0	0	0	0	0	0	1.00028	0	0	0	0	0	0	0	0.0293942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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