TCONS_00001814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001814
Unique NameTCONS_00001814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001814 ID=TCONS_00001814|Name=TCONS_00001814|organism=Clytia hemisphaerica|type=transcript|length=1253bp
tttttgttttgaagggCGCATAATTGATCAGTCGCTGCACTCATTCGGAA
CGAAACAAAGGCGCAAATAGTGGAAACAAAAAGTTAAACATAAATAatca
agaaaaatataataaaatcttaAGCTTTTTGAAGTACTAGACAAGTTACA
ATTTTTACgctaaattttgcaaatttttgttcGATAATTGAATTGTATTG
TCTGTTTTTTGTGTTTGGCTCTTTTGTCCTGCTAAGATAAATACATAATG
ATATAATCATAATTAGCAAAATGTATAAGATTTCAATAGTATTtctgatt
ttggctgctgcgaTTTTCCAAGTACTTCATTGTGATGATACGATTGACCC
CGATGCTGTAAAATCAACCGATAAAGATCCTTGGGAGAAATGGAGTAAAT
TACCGTCATCTGGTAGCAAAAGTCAAGGTAACCATAACAACGATAGTGAT
GATGATGGTGGTGAAGTTGACGTGACCGAAACAACAACCACTGAGGTCCA
CACTAAGACCAACATCAAGAAGAAACCTTCTTCAAAGCAACCCCAAGTTT
CTTCAGTTGATAAAGAAACTAAAGACCAGTTCAATGATGCTGTCGATGAA
ACAGACCCAGTCTCCGTTTTGAATCCAACAAAAAAGCCATCCAAAAAGAA
ACAACAGCACAAGAAGAAGCACCATAAGAAAACTCAACGAAAACACAATG
TTGCTGAAAAGAAACAATTCAACTATCATGGTGATTTCTATCCAGGAAGT
TTGTGGCAATATCCTTACCCGTATTATCACCCATTATATGGGTGTGGAAT
GTCTCCTGACTGCCCTTGTGGAGGAGCACCAGAGCCGCCATGTGCACCAC
CACCAACAGAAGCTAAAGAAGATAAACCTCCCACAGAAGCTAAAGACGAT
GGAGATAAACCTCCACCGAAGAAACCGGCAACAAAGAAAGTTGACATCGA
AGCTTTAGAAGACGCCGAAACTCCAAAGTCGAGACATAGACGACAATTAG
TACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTggtttccac
ccaggacatacTGGCGGTGGTTGGGGTGCTCCTTATTGGTACAAAAAACG
AACTCACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGCC
CACCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGCGGAGGT
TGGGGTGCTCCTTATTGGTATAAAAAAAGCGAAACGAAAAATCCTGAAAA
GAC
Run BLAST on NCBI

transcript from alignment at sc0000012:787241..794699+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001814 ID=TCONS_00001814|Name=TCONS_00001814|organism=Clytia hemisphaerica|type=transcript|length=7459bp|location=Sequence derived from alignment at sc0000012:787241..794699+ (Clytia hemisphaerica)
tttttgttttgaagggCGCATAATTGATCAGTCGCTGCACTCATTCGGAA
CGAAACAAAGGCGCAAATAGTGGAAACAAAAAGTTAAACATAAATAatca
agaaaaatataataaaatcttaAGCTTTTTGAAGTACTAGACAAGTTACA
ATTTTTACgctaaattttgcaaatttttgttcGATAATTGAATTGTATTG
TCTGTTTTTTGTGTTTGGCTCTTTTGTCCTGCTAAGATAAATACATAATG
ATATAATCATAATTAGCAAAATGTATAAGATTTCAATAGTATTtctgatt
ttggctgctgcgaTTTTCCAAGTACTTCATTGTGATGATACGATTGACCC
CGATGCTGTAAAATCAACCGATAAAGATCCTTGGGAGAAATGGAGTAAAT
TACCGTCATCTGGTAGCAAAAGTCAAGGTGAAAATTGTTTCCTCATTTTG
TCTTGCAATTCATAATAAATGTCGTTCAGTAGGCCTGAAAACCTGGTAAT
TTCACTTATCTATGTTTGCTTGAGACTTTGAAACCATTGTTTTGGAGGAT
GTTTGTAATAAATCGAATTTAAACCAAATACTACTCCACTAATGTTTGAA
AGTAGTTCTAACCAGCAGATCAGTATAACCATTAATAACCCCAactttca
taaatttttgtattttctaacGAGATGGCTATTAAAATTAAATcgagttt
tttgatttttgttacaGGTAACCATAACAACGATAGTGATGATGATGGTG
GTGAAGTTGACGTGACCGAAACAACAACCACTGAGGTCCACACTAAGACC
AACATCAAGAAGAAACCTTCTTCAAAGCAACCCCAAGTTTCTTCAGTTGA
TAAAGAAACTAAAGACCAGTTCAATGATGCTGTCGATGAAACAGTACGTa
ttctataagaacatccaaaatttttgaagcattcggatctttttgttctt
ctgattttcaagtttaaaatgttcttaacatgattttatttttactattt
tgtgagtatttttgtccattttctaagaaatcgggtgtcttagaatctgc
aaagccttaaaatgtttttatcttgTTCTTAATTAATGATAtattggtca
tcgaagccttgtgttcttagaTAGTTTGTTCACGACGTGCATACAATACg
gattcttatttttctttaagGAAAGAACCAGGGCCCTTTTCAAACCCTCC
CCTCTCCCTTAAAAAAgattcattataaaaaaaagtcattattcaatttt
aaatttttacccattttttagtcaaattagtctggaatttgaaaatttcc
tttCGGTCCAAACTAAGGTTACGTttccttttcaaaacaaaaaccatCTC
AGCTCTTCTCTAATTGTCATTTGCTAGAGACTTTTTTAACGTCTAGAACT
TATGCAATTAGCAACAATTGGTGGCCTTATTGAccgatctttttcaaaat
tcatcatgAATTTGATCCTATAGGAATGTTATTATTTGATTAACGTGTGC
TCTTGATTTCCAGGACCCAGTCTCCGTTTTGAATCCAACAAAAAAGCCAT
CCAAAAAGAAACAACAGCACAAGAAGAAGCACCATAAGAAAACTCAACGA
AAACACAATGTTGCTGAAAAGAAACAATTCAACTATCATGGTGATTTCTA
TCCAGGAAGTTTGTGGCAATATCCTTACCCGTATTATCACCCATTATATG
GGTGTGGAATGTCTCCTGACTGCCCTTGTGGAGGTATGAAGGCTGCTGCT
AATTCcgttaaggtggtagtctaccgccagatttcaaaagtcaaaaaatc
acattttttgcaataactcaagaacttctttacatttcgtaatgaaattt
tcaggaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCcaggagatgttcagaaagacctaaggatctcaaaacacccaaaaacca
aaattcgacaattttttcgatgattttccatttctcggtagactaccacc
ttaaccAAGAACTctgtaatttatctttaaaTTGATCTATAGATAAAAGT
ATTCATCGATGGGAATCTATTTTCAAATGGTaacttaattttgaaatatt
gaggTTCCTTCCCAGAAATCGAGATTTCCAGCTTAAAAACCAAGGGTTGT
AAAATTTGATTTAGATTCTCCTGGCTAACAAATCGCTAATTAAGCATTTT
GTAATTAATGCAATTTCTCaaatctagaaaaaaaaagagatttgagAACC
TTTTACTTCACTTTCTTCTTCCTTTCCCAAGGAGCACCAGAGCCGCCATG
TGCACCACCACCAACAGAAGCTAAAGAAGATAAACCTCCCACAGAAGCTA
AAGACGATGGAGATAAACCTCCACCGAAGAAACCGGCAACAAAGTAAGCA
ATGACGATTCTTTCAACATTCTTAcgaacaaaaataaagaaactgaGACA
CATTACGATCATCTTTAGAACAtttgagcatattttttttttttaaatct
ttgagcAGCTGAGACAGAAAATTCAATTCttcctataaaaaatgttttca
aaaacaccTTTTAATAAGCATTATTCTTTTCGTTACAGGAAAGTTGACAT
CGAAGCTTTAGAAGACGCCGAAACTCCAAAGTCGAGACATAGACGACAAT
TAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTggtttc
cacccaggacatacTGGCGGTGGTTGGGGTGCTCCTTATTGGTACAAGTA
AGTTTACCGATTTTATGACAGCTGTTTATGCATGACGTGTTGATTGATTA
ATAATATGTTTTCTTCTCCGTATATGAAGCTACTACTATGACTGTTTCAT
CGACTTTGATAACATAATGAGCTCTTCAGGGAAACTAATTCATAacattt
cccatgttcaaacaAGTATTCCAGGAATTAGGGAGTTCCCCTATTAAGCT
TTTGGCGAATCTGTCTCAAAAATGATGCTTTTTTCTCGTTTTAAACTGAT
GCctgtttgacatttttaaatatCTATACCGACCAATCCAAGAGATTAAG
CATTGTttaagaaatctaaaaattttgggaTTTTAGCTACTATTGTTTAA
cactaatttttcttttttattcgtAGAAAACGAACTCACACTCCACAAGT
CAGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGG
GCggtttccacccaggacatacTGGTGGAGGTTGGGGTGCTCCTTACTGG
TACAAGTAAGTCCTCCATTTACTCtaacaaaatcaataaacacCGTCACT
CTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCTTACTATT
ACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATttat
ttcaacaaaaatcaTTGATAATCATTAACTGATAAACCATCTTTAGAGAT
CTTCCCCTTGGCGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGTGAT
CTATTGAGTATTGTTGGGATAGATTGGcaaatttttgaagaatatttttc
ataaaattgattttctgcCTTATAGAAAACGAACTCACACTCCACAAGTC
AGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGG
TGGTTTCCAGCCAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
AGGACATACTGGTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTAAGTCC
TCCATTTACTCttacaaaatcaataaacacCGTCACTCTAATACTGTTCA
GTTTCATTACTGTTGAAAAATATTACCCCTTACTATTACTATTTAGTAAT
GGTAATGGAAATAAATTCCCTTAGAGCTCAAATttatttcaacaaaaatc
aTTGATAATCATTAACTGATAAACAACCATCTTTAGAGATCTTCCCCTTG
ACGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGTATCTATTGAGCAT
TGTTGGGATAGATTGGcaaatttttgaagaatattttttataaaattgat
tttctgcCTTATAGAAAACGAACTCACACTCCACAAGTCAGACAATTAGT
ACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacc
caggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGTAAGAT
AATATCTATGATAAAATAAGGAATGTTCAACTTCAATTGCTTTCCAAAGC
TAACAACGTCTTGTTTTGTGCGTCAGAACTATGGGTTGTTCCTAATCGTT
TCAGTTACTCCGACGTCCTCAAAATAGTAGAATAATAAACTTGGTATAGT
TTCTCGTAGTAAATGATGAAATAGATTCACCGGCTACAATAGAATAAAGC
GTACTTGAGTGCATCTATTTTGAGTTACTTTCATTATTATGTACACTTTT
AGGAAAAGCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATT
AGTTCCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttcc
acccaggacatacTGGCGGAGGTTGGGGTTCCCCTTATTGGTACAAGTAA
GTTAATATTTGTGAtgtaaagcaaaaaaaagtttaactttCGCTGCTATC
AAAAGCTAACAAAGTCTTGTTTGGAAGCTGAAACGATACTAATATTTTAG
ATACGGCCTACGAGGTTTCGGTGTTGCAGAAATCAATCGTTTTTACTCGG
AATTCGGGTAATATTACGGAATCCTAAAATTGGTTCGGTATCTGAAATAG
ACGTATTTGTACGTCAAAATCTGGGTGATGAAAAGATTACATTCTTGAAT
TTCGGAATTTTTGCAAGATggctcaaaaacaaaatttttcggtttttcga
aaatcagaaCCCTCGTACGCCCCGCCCCCTATACTACACTAAGAAGTATT
TCCAgagattttgacattttagaaAATAGATTTAAGTACTAGAGACGCCT
ACCCATTACGTCCTATGTATGGTCGATTGAGATTTCTTAAGCATTTTCCA
ATTGCTTATATcccatttttttagaaaagacGATGTATCACCAAAGCAGC
TAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCGGTTTC
CACCCAGGACACACTGGTGGAGGTTGGGGTGCTCCTTATTGGTATAAGTA
AGTTTGAACGAACATACTTTGATTTCCTCGGCTATTTCGATGTTTAAACT
TGCGCACAGCTTTCTTGAAGAATCCTCTAAACATGTTAGAGCTTTTGCAT
ATACTGGTAATGTGAGGAAAAGCATTGCCAAAATAATGCAATGCTTTAAT
AAAATACGATTGGGAGATATTCTCTTTATATCTTTAGGTTATAATGTTTT
TCTATTCGAGTTGTAGCACTGAACTAAAGTTGGCAACACTATTCTGAATT
ATAATGGGAACTATATTATTTTACTTAAACCAACAGAAAACGAACTCACA
CTCCACAAGTTAGACAATTAGTACCAACACACTATTATGGTCCACCAAGT
GCAGGATGGGGTGGTTTCCAGCCAGGACATACTGGTGGAGGTTGGGGTGC
TCCTTATTGGTACAAGTAAGTTGTTTAGATTTCAAAGGCGTAGTCAGATA
GTTTGAGATATTTGGTCTTTAGATTCCTCTTAATATTTCTGAGCAAACTT
TTTTGTAAGCAATAGATCTCTCAACGTGGAAACCCTGTGTGAACCCATCT
TCAACGTTTTCAAAACatcgtttttcaaacttacaaAATCATTTTAGCAA
AAAGAATTGGGGGTTTACCgccaaactaaaaaaaatatacAGACCAAAAG
TCTTTTACCGTCTGGTAAGCCCTTCTAAAAAGGATCTACAAATGGCTAAT
AGACCTTTGTTGCCTTTATCATAAAAGTCTAATATCAAAGTTTCAAGTCT
AATATTTACCGTTGTTTTCATATAAATAGAAAAAGCGAAACGAAAAATCC
TGAAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001814-exon-sc0000012-1491911889:787241..787667TCONS_00001814-exon-sc0000012-1491911889:787241..787667Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:787241..787667TCONS_00001814-exon-sc0000012-1510915933:787241..787667Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:787241..787667TCONS_00001814-exon-sc0000012-1575043694:787241..787667Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:787958..788133TCONS_00001814-exon-sc0000012-1491911889:787958..788133Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:787958..788133TCONS_00001814-exon-sc0000012-1510915933:787958..788133Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:787958..788133TCONS_00001814-exon-sc0000012-1575043694:787958..788133Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:788754..788973TCONS_00001814-exon-sc0000012-1491911889:788754..788973Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:788754..788973TCONS_00001814-exon-sc0000012-1510915933:788754..788973Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:788754..788973TCONS_00001814-exon-sc0000012-1575043694:788754..788973Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:790872..790983TCONS_00001814-exon-sc0000012-1491911889:790872..790983Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:790872..790983TCONS_00001814-exon-sc0000012-1510915933:790872..790983Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:790872..790983TCONS_00001814-exon-sc0000012-1575043694:790872..790983Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:791179..791337TCONS_00001814-exon-sc0000012-1491911889:791179..791337Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:791179..791337TCONS_00001814-exon-sc0000012-1510915933:791179..791337Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:791179..791337TCONS_00001814-exon-sc0000012-1575043694:791179..791337Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:792755..792858TCONS_00001814-exon-sc0000012-1491911889:792755..792858Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:792755..792858TCONS_00001814-exon-sc0000012-1510915933:792755..792858Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:792755..792858TCONS_00001814-exon-sc0000012-1575043694:792755..792858Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:793863..793887TCONS_00001814-exon-sc0000012-1491911889:793863..793887Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:793863..793887TCONS_00001814-exon-sc0000012-1510915933:793863..793887Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:793863..793887TCONS_00001814-exon-sc0000012-1575043694:793863..793887Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1491911889:794670..794699TCONS_00001814-exon-sc0000012-1491911889:794670..794699Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1510915933:794670..794699TCONS_00001814-exon-sc0000012-1510915933:794670..794699Clytia hemisphaericaexon
TCONS_00001814-exon-sc0000012-1575043694:794670..794699TCONS_00001814-exon-sc0000012-1575043694:794670..794699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:787241..794699 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	7.72333e-05	0.801655	0	0	0.409249	0	0	0.086559	1.0256e-07	0	0	0	0	2.60225e-05	2.26009e-06	1.85961e-07	1.43791	0	0.223368	0.0769008	0	0	0	0	0	1.86322e-08	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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