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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001803 ID=TCONS_00001803|Name=TCONS_00001803|organism=Clytia hemisphaerica|type=transcript|length=2433bpRun BLAST on NCBI protein sequence of TCONS_00001803-protein >TCONS_00001803-protein ID=TCONS_00001803-protein|Name=TCONS_00001803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp MGNYIGYQQDNQVEPATSSNTTAEEKLPSSPKKRKRDVDDLSSDEDSNIPRun BLAST on NCBI transcript from alignment at sc0000012:716247..722096+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001803 ID=TCONS_00001803|Name=TCONS_00001803|organism=Clytia hemisphaerica|type=transcript|length=5850bp|location=Sequence derived from alignment at sc0000012:716247..722096+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:716247..722096+ >TCONS_00001803 ID=TCONS_00001803|Name=TCONS_00001803|organism=Clytia hemisphaerica|type=CDS|length=13176bp|location=Sequence derived from alignment at sc0000012:716247..722096+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001803 vs. Swiss-Prot (Human)
Match: GMCL1 (Germ cell-less protein-like 1 OS=Homo sapiens GN=GMCL1 PE=1 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 2.763e-108 Identity = 181/433 (41.80%), Postives = 271/433 (62.59%), Query Frame = 2
Query: 212 TPR-KKMKTTSEYIYNTLFVSGENSDVTIQALDHDWKLHVLYLCQSPYFRSMFLQDWQEKGESLISITIPDPWINIKALDIAFGSLYSYEVDSDLLME--NLIPVLAASRMFQLDGLLQHCEDSMVETICSDNVCKYHDAATRYDLVVVKERCFSWLERNMLLCRTSVLVKDXXXXXXXXXXXXNNFVVMQVEMDIYNFLKLWLYLQIHRDCNSELKELVIKTQKYFYAQ-KDSNSKSFLESELGLNYANIFQSLRLQNMITDAKCIRLIEKDGLIPKAWLLPLYEKQWRTMLAVYSGSDQGPSEVDEDDFHKYSFRCGRMLEADNRYCWRWTGFSYGIDMILTYNNRTRTLCAKRNTFSQPCNFAICLQSQRQVAMKFKAFTLTSSGQEALVKDTDIMQWNFRTDEEIPLLTLDED-WTFPVYISARMLLAS 1495
TPR KK+K+TS+YIY TLF++GENSD+ I AL +W LH +YLCQS YF SMF W+E ++I + IPD I+++AL +AFGSLY D+L++ ++ +LAA+ + QLDGL+Q C ++M ET+ VC Y+ +A Y L VK++C WL N++ + L K+LS +++ L+ S+N VMQVEMDIY LK W++LQ+ N LK+L+ +T +F Q KD +FLE+E G + ++F+ LRLQ +I+D R+IE+D ++P WL +Y++QW ML S+ GP E+++++ S RCGR L D YCWRWTGF++G D+++TY N R + KRNT +QPC+ ++ LQ +R +A + + + SSG+ + T D+E ++ LD FP+YI L S
Sbjct: 84 TPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYFSSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYR----DDVLIKPSRVVAILAAACLLQLDGLIQQCGETMKETVNVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKQRKDFEGMAFLETEQGKPFVSVFRHLRLQYIISDLASARIIEQDAVVPSEWLSSVYKQQWFAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDLLVTYTN--RYIIFKRNTLNQPCSGSVSLQPRRSIAFRLRLASFDSSGKLICSRTTGYQILTLEKDQEQVVMNLDSRLLIFPLYICCNFLYIS 510 The following BLAST results are available for this feature:
BLAST of TCONS_00001803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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