TCONS_00001803-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001803-protein
Unique Name	TCONS_00001803-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	487

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001803-protein ID=TCONS_00001803-protein|Name=TCONS_00001803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MGNYIGYQQDNQVEPATSSNTTAEEKLPSSPKKRKRDVDDLSSDEDSNIP
ATPRKKMKTTSEYIYNTLFVSGENSDVTIQALDHDWKLHVLYLCQSPYFR
SMFLQDWQEKGESLISITIPDPWINIKALDIAFGSLYSYEVDSDLLMENL
IPVLAASRMFQLDGLLQHCEDSMVETICSDNVCKYHDAATRYDLVVVKER
CFSWLERNMLLCRTSVLVKDLSETLLESLLSSNNFVVMQVEMDIYNFLKL
WLYLQIHRDCNSELKELVIKTQKYFYAQKDSNSKSFLESELGLNYANIFQ
SLRLQNMITDAKCIRLIEKDGLIPKAWLLPLYEKQWRTMLAVYSGSDQGP
SEVDEDDFHKYSFRCGRMLEADNRYCWRWTGFSYGIDMILTYNNRTRTLC
AKRNTFSQPCNFAICLQSQRQVAMKFKAFTLTSSGQEALVKDTDIMQWNF
RTDEEIPLLTLDEDWTFPVYISARMLLASFTTDSLDC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000966	XLOC_000966	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001803	TCONS_00001803	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000210	BTB/POZ_dom
IPR011333	SKP1/BTB/POZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000210	BTB/POZ domain	SMART	SM00225	BTB_4	coord: 75..177 e-value: 3.0E-10 score: 50.1
IPR000210	BTB/POZ domain	PFAM	PF00651	BTB	coord: 66..175 e-value: 8.2E-12 score: 45.2
IPR000210	BTB/POZ domain	PROSITE	PS50097	BTB	coord: 75..145 score: 10.592
None	No IPR available	GENE3D	3.30.710.10		coord: 64..215 e-value: 9.8E-22 score: 76.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
IPR011333	SKP1/BTB/POZ domain	SUPERFAMILY	54695	POZ domain	coord: 64..174

Blast

[Close]

BLAST of TCONS_00001803-protein vs. Swiss-Prot (Human)
Match: GMCL1 (Germ cell-less protein-like 1 OS=Homo sapiens GN=GMCL1 PE=1 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 4.363e-118
Identity = 181/433 (41.80%), Postives = 271/433 (62.59%), Query Frame = 0

Query:   52 TPR-KKMKTTSEYIYNTLFVSGENSDVTIQALDHDWKLHVLYLCQSPYFRSMFLQDWQEKGESLISITIPDPWINIKALDIAFGSLYSYEVDSDLLME--NLIPVLAASRMFQLDGLLQHCEDSMVETICSDNVCKYHDAATRYDLVVVKERCFSWLERNMLLCRTSVLVKDLSETLLESLLSSNNFVVMQVEMDIYNFLKLWLYLQIHRDCNSELKELVIKTQKYFYAQ-KDSNSKSFLESELGLNYANIFQSLRLQNMITDAKCIRLIEKDGLIPKAWLLPLYEKQWRTMLAVYSGSDQGPSEVDEDDFHKYSFRCGRMLEADNRYCWRWTGFSYGIDMILTYNNRTRTLCAKRNTFSQPCNFAICLQSQRQVAMKFKAFTLTSSGQEALVKDTDIMQWNFRTDEEIPLLTLDED-WTFPVYISARMLLAS 479
            TPR KK+K+TS+YIY TLF++GENSD+ I AL  +W LH +YLCQS YF SMF   W+E   ++I + IPD  I+++AL +AFGSLY      D+L++   ++ +LAA+ + QLDGL+Q C ++M ET+    VC Y+ +A  Y L  VK++C  WL  N++  +   L K+LS  +++ L+ S+N  VMQVEMDIY  LK W++LQ+    N  LK+L+ +T  +F  Q KD    +FLE+E G  + ++F+ LRLQ +I+D    R+IE+D ++P  WL  +Y++QW  ML     S+ GP E+++++    S RCGR L  D  YCWRWTGF++G D+++TY N  R +  KRNT +QPC+ ++ LQ +R +A + +  +  SSG+    + T         D+E  ++ LD     FP+YI    L  S
Sbjct:   84 TPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYFSSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYR----DDVLIKPSRVVAILAAACLLQLDGLIQQCGETMKETVNVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKQRKDFEGMAFLETEQGKPFVSVFRHLRLQYIISDLASARIIEQDAVVPSEWLSSVYKQQWFAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDLLVTYTN--RYIIFKRNTLNQPCSGSVSLQPRRSIAFRLRLASFDSSGKLICSRTTGYQILTLEKDQEQVVMNLDSRLLIFPLYICCNFLYIS 510

The following BLAST results are available for this feature:

BLAST of TCONS_00001803-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001803-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GMCL1	4.363e-118	41.80	Germ cell-less protein-like 1 OS=Homo sapiens GN=G...	[more]

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TCONS_00001803-protein (polypeptide) - C. hemisphaerica