TCONS_00001796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001796
Unique NameTCONS_00001796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001796 ID=TCONS_00001796|Name=TCONS_00001796|organism=Clytia hemisphaerica|type=transcript|length=1770bp
gAACTGAAGAACTAAAAAATAATGAACAGATTGGAGGATCTACATCTTCA
TCAGTTACAACTATATGCTTATTGTTCAATCGCTCAAAGGCTATTACAAA
AATGTTTAATGTGTCAAGCTCTAGCATGTAAACAGGCTTCTTCGAAAGAC
CCTTTAACAGCATTATCAGAAGTTCTTGAACATCACAAAGCTAAGCTGAA
AAAGATGAACAACGTTGTAACCAGCGCTAATAAAGTGGTTATCTACGATG
ATTTTGATGCTGATTTATTGAACACTTCCATCAATATTGGTAAACTAGAT
GTTTGTGTTTTGATAGAGATACTACAAGGTATTGATTCCTTTGAAACATG
CCAAAAAAATACACCAGCTGGTCTTCAATGTCTTGGTGTCAATCACCAGA
ACACTTGTTGTGGACAATGCCTTCATCAATGTATAAAGTGTTTAAAGGTC
AAATGTAAAGGAAAATGCTGTGATATAGATTCGAAGAAATCTTGTAATCA
TCCTTGCCAACAGTGTGGTCGCAATGAAGATGAATGCAAGAAATATAAAA
AGGTATGCTGTTCGGATTGGTTGATCTGTAGATTGTGTTTTGGCTGtttc
ttgaaaaaagaaaaagttgattCGTTTGTACAGTATCAGGTTATTGGGAA
TAATTCAGTTTCCTGCATTAAAATGGAAATGAAGTTTGCATTGCCTTTGC
TATTGAATGTGCGAAATTTAACAATGCATTTGACCATGAAAGAGTGCATT
GAACTTGACCAGTCTACTTTTCAATGTAAACAGTTACCAAGTATCACAAA
TTGGAATGATATGTCGATAGTTGTTGATAAAAGTATGAGAACGTTACTTC
AATTTCTCGTTTCCATACGATTCTTATCGATTGTGGAGGAGAATCGGTTT
GATACGGATATTACAAAAGTCGGTAATATGGTAAACCAGGAGGAACTATT
GCAAGTTTATGAGGAGAGAATTAGAACATTTGGCACAATGGAGCAATTAC
TGGAGATTGGCCAACGGGGTGTAGATAGTCATCAGCATATACAAGAGATG
CGACATCAGATTGATGATATTTCATTTCAGATTGACAATGTTTTGACCAA
ACTTGACACCTTTtcattaattttaaaaatacaatttaCTTTTCCCATTC
CGATTGATTTAGATTTAGATTGCGATGAAGTTGAAAGAATCGAATGTTCA
ATAGAGAGAACAATGGAATCGATTTTTCTTGGTGATTTTAAAGTGTCAAC
TTGTGGGTTTATACCAACACCCTTTACTGCCAACGAGAGAACAATAGCTT
TGGAATTTTCCATCCAGAAAGTACGTAATGGAATTTCAACAAGCGTTGAG
GAGTACAACGATCGGAAATCAGAAGGATCAAAAAGTCTTTgggaaaacat
taaaaaaggaTTTTCTACAGACTTGAATGATGTCCATGTGAAACTATTTT
ACTGGTCAGTCTTCCGTCTTTGAATGACTTTAGAACAcgaatttttataa
attttaatgATAATAAATTAAGTTTTGGTACATTTTTATACAATACATTG
AAGGAGAAATCGCGTATATTTCACCATTtcctttattaaaagaaaaaaaa
attcaaaaaactctCGTGACAGCATTTTTGCAAAACACGCTTTTTTTAGC
ATGGATGGTATGTTACtaagtttttttagattttcaggcttaaatgttca
tAAATTGTTCCTATTGTAAATAtgaattaagaacatttcatttattttga
GCCTGTAATGTTCTTAGATC
Run BLAST on NCBI

transcript from alignment at sc0000012:652657..654426+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001796 ID=TCONS_00001796|Name=TCONS_00001796|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at sc0000012:652657..654426+ (Clytia hemisphaerica)
gAACTGAAGAACTAAAAAATAATGAACAGATTGGAGGATCTACATCTTCA
TCAGTTACAACTATATGCTTATTGTTCAATCGCTCAAAGGCTATTACAAA
AATGTTTAATGTGTCAAGCTCTAGCATGTAAACAGGCTTCTTCGAAAGAC
CCTTTAACAGCATTATCAGAAGTTCTTGAACATCACAAAGCTAAGCTGAA
AAAGATGAACAACGTTGTAACCAGCGCTAATAAAGTGGTTATCTACGATG
ATTTTGATGCTGATTTATTGAACACTTCCATCAATATTGGTAAACTAGAT
GTTTGTGTTTTGATAGAGATACTACAAGGTATTGATTCCTTTGAAACATG
CCAAAAAAATACACCAGCTGGTCTTCAATGTCTTGGTGTCAATCACCAGA
ACACTTGTTGTGGACAATGCCTTCATCAATGTATAAAGTGTTTAAAGGTC
AAATGTAAAGGAAAATGCTGTGATATAGATTCGAAGAAATCTTGTAATCA
TCCTTGCCAACAGTGTGGTCGCAATGAAGATGAATGCAAGAAATATAAAA
AGGTATGCTGTTCGGATTGGTTGATCTGTAGATTGTGTTTTGGCTGtttc
ttgaaaaaagaaaaagttgattCGTTTGTACAGTATCAGGTTATTGGGAA
TAATTCAGTTTCCTGCATTAAAATGGAAATGAAGTTTGCATTGCCTTTGC
TATTGAATGTGCGAAATTTAACAATGCATTTGACCATGAAAGAGTGCATT
GAACTTGACCAGTCTACTTTTCAATGTAAACAGTTACCAAGTATCACAAA
TTGGAATGATATGTCGATAGTTGTTGATAAAAGTATGAGAACGTTACTTC
AATTTCTCGTTTCCATACGATTCTTATCGATTGTGGAGGAGAATCGGTTT
GATACGGATATTACAAAAGTCGGTAATATGGTAAACCAGGAGGAACTATT
GCAAGTTTATGAGGAGAGAATTAGAACATTTGGCACAATGGAGCAATTAC
TGGAGATTGGCCAACGGGGTGTAGATAGTCATCAGCATATACAAGAGATG
CGACATCAGATTGATGATATTTCATTTCAGATTGACAATGTTTTGACCAA
ACTTGACACCTTTtcattaattttaaaaatacaatttaCTTTTCCCATTC
CGATTGATTTAGATTTAGATTGCGATGAAGTTGAAAGAATCGAATGTTCA
ATAGAGAGAACAATGGAATCGATTTTTCTTGGTGATTTTAAAGTGTCAAC
TTGTGGGTTTATACCAACACCCTTTACTGCCAACGAGAGAACAATAGCTT
TGGAATTTTCCATCCAGAAAGTACGTAATGGAATTTCAACAAGCGTTGAG
GAGTACAACGATCGGAAATCAGAAGGATCAAAAAGTCTTTgggaaaacat
taaaaaaggaTTTTCTACAGACTTGAATGATGTCCATGTGAAACTATTTT
ACTGGTCAGTCTTCCGTCTTTGAATGACTTTAGAACAcgaatttttataa
attttaatgATAATAAATTAAGTTTTGGTACATTTTTATACAATACATTG
AAGGAGAAATCGCGTATATTTCACCATTtcctttattaaaagaaaaaaaa
attcaaaaaactctCGTGACAGCATTTTTGCAAAACACGCTTTTTTTAGC
ATGGATGGTATGTTACtaagtttttttagattttcaggcttaaatgttca
tAAATTGTTCCTATTGTAAATAtgaattaagaacatttcatttattttga
GCCTGTAATGTTCTTAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000965XLOC_000965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001796-exon-sc0000012-1491911889:652657..654426TCONS_00001796-exon-sc0000012-1491911889:652657..654426Clytia hemisphaericaexon
TCONS_00001796-exon-sc0000012-1510915933:652657..654426TCONS_00001796-exon-sc0000012-1510915933:652657..654426Clytia hemisphaericaexon
TCONS_00001796-exon-sc0000012-1575043694:652657..654426TCONS_00001796-exon-sc0000012-1575043694:652657..654426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:652657..654426 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68063	2.12589	5.4637	6.76049	2.15759	1.63395	1.72442	1.44937	1.4067	0.988282	2.80942	1.35518	1.11385	0.698042	1.62827	3.29945	1.99858	1.77899	2.02295	3.40202	2.06332	1.8971	3.34011	3.90122	1.12534	1.95375	6.36869	5.07239	2.8021	2.63125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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