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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001790 ID=TCONS_00001790|Name=TCONS_00001790|organism=Clytia hemisphaerica|type=transcript|length=1969bp
TGAATTCACCAGCATGAGTTTGACATTGCAAACATTTCCTATTTACTGTA
ATAAATCACCAACTGTTCATGTCGCTGTGTTCTGTGTTTTACAATGAGCT
CACCACGCATCTGAAAAAGCTTTCCAATCAAtcagtaaaatataaaatac
acAGTTTTTTATAGTAGAGGCAGGAGTATGGGAAGTAAAATGATCAGGCG
ACATAAAGGATAATCCAAATTTAAAAGCAACTTGGAACTTGAAACTGAAa
acaaatcttaaattttagttGGATTCAGCCAGTTGGGATAAATGGTGTAC
AGTAGATTCCCGGTTATTCGAACCTGTACTTATTCGAATAGTTCGTTTAT
TTTCGAATCGAGATGGCGTTCCCATTGGACCTGCTTACCCAATTCAGGCA
AAAACACTCTCAGTTATTCGAACATTCAGTTATTCGAACATTCAGTTATT
CGAACATTCAGTTATTCCAAGCGATTTCTTTTCAACTTTGCTAATGAAGA
ACAACAGCAACAGTTTTTCTATATGTCTACCAAGAAAGCTGAAGATGAAA
CTGATGACCAGACGCGACAATTATTCCCAAGTGTGCCCGAAGATAAACGA
TTGGGcatattaagaacattccaTCATAAAATGTATGAAGATGACACAAG
CGGAAATGACGGACCAGGATTGTGCTCGACATTCTACGATTTctatttca
acaaaaacaagcgTTATTGCTTTGTGGTTTTTGTTGCCTTTGCTTTAGTT
TTGGTCGGCGTTTTAACCATGTTGTATGGGTTTGCTTTGCCGACAGTTTA
TCGTTCATTGGAAGGGAGCCAGGCTAAAAATTCGACTGTTTTAACGTTGG
ATCTACAAGAAGCTGAAAAAGAGAAagatatatttttgattgcatCTATA
GGAATGATTAGTTTTGGACTTATAGCCGCTGCATTTGGTTTATTTATGCC
ACTCTATCAAGATGCTGGAAAAAGCGAGTATGAAGATTCTATAGTAAAAA
CACCAATATTGGTTGATTACGAATTAGCGCCTTATAAAGACTCATTGAAA
GCTGGAAATAATTTTGGGTTTGTTGGCGACGAGTCTAGTGATTGGACACC
TAGTCCGTGTGATTCTCCCCTTGATAATGTTTCTTTTCAGAGTTTCTTTG
TACAGAAACATGTGAATACACCAAATGAATGAAAANCCCGTGTGATTCAC
CACTTGATAATGTTTCTTTTCAGAGTTTCTTTGTACAGAAACAGGTGAAT
GCgtcaaatgaatgaaaaaatgaatgatCGAAGGTGaattttcaccgggg
ctgtgagacaggggtgtttttagtaattttgaaggaaaattttaTGGATC
GGTGGATTTTTGGGCAacaagattttgaatatttataatGTAGgcttaga
aaataaaatatatcaaTTGAATACGTTTGGATACATACGTTCAAGTTTAA
CTAAGGTATACACTTTAAGCATATATTAACCTGTTCCCCCTTTTTTGTCT
ATACAGACGCAAACGGacctgtcaaaaaaatttagaaaaactcCATGGAA
ATTTGACAGTTTTCCAAATACTTAGATAGcaaaaaagtagttttttttcC
TTTCCACTATCTTTTATAATGGTGTTTTCCATACCACCAACAGATCTAAT
CTGTTTTGATATCATGATagttttaaaactgttttagtcggtgttttttt
ttagaatgtacCTGAGTGACTTTTCAGAGATCtttaaaatcatctttttc
GCGATATCTTCTTTAATCTTAGGAATTTTTGGaccttattttcaaaaatg
atgtaTTTTTCCACGAGGATTCCAATAATATAGATTTCGAAGTAATTTGG
GATGAAATATTCcagaaaattaagattttctgatttttactaAAGCAATT
TTTTAAAACAGTTTTATTATCTAAACCCTTCGGAAAACTATTGTTGAAac
cataaattttcaaatttaa Run BLAST on NCBI protein sequence of TCONS_00001790-protein >TCONS_00001790-protein ID=TCONS_00001790-protein|Name=TCONS_00001790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MVYSRFPVIRTCTYSNSSFIFESRWRSHWTCLPNSGKNTLSYSNIQLFEH
SVIRTFSYSKRFLFNFANEEQQQQFFYMSTKKAEDETDDQTRQLFPSVPE
DKRLGILRTFHHKMYEDDTSGNDGPGLCSTFYDFYFNKNKRYCFVVFVAF
ALVLVGVLTMLYGFALPTVYRSLEGSQAKNSTVLTLDLQEAEKEKDIFLI
ASIGMISFGLIAAAFGLFMPLYQDAGKSEYEDSIVKTPILVDYELAPYKD
SLKAGNNFGFVGDESSDWTPSPCDSPLDNVSFQSFFVQKHVNTPNE Run BLAST on NCBI transcript from alignment at sc0000012:497519..500082+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001790 ID=TCONS_00001790|Name=TCONS_00001790|organism=Clytia hemisphaerica|type=transcript|length=2564bp|location=Sequence derived from alignment at sc0000012:497519..500082+ (Clytia hemisphaerica)
TGAATTCACCAGCATGAGTTTGACATTGCAAACATTTCCTATTTACTGTA
ATAAATCACCAACTGTTCATGTCGCTGTGTTCTGTGTTTTACAATGAGCT
CACCACGCATCTGAAAAAGCTTTCCAATCAAtcagtaaaatataaaatac
acAGTTTTTTATAGTAGAGGCAGGAGTATGGGAAGTAAAATGATCAGGCG
ACATAAAGGATAATCCAAATTTAAAAGCAACTTGGAACTTGAAACTGAAa
acaaatcttaaattttagttGGATTCAGCCAGTTGGGATAAATGGTGTAC
AGTAGATTCCCGGTTATTCGAACCTGTACTTATTCGAATAGTTCGTTTAT
TTTCGAATCGAGATGGCGTTCCCATTGGACCTGCTTACCCAATTCAGGCA
AAAACACTCTCAGTTATTCGAACATTCAGTTATTCGAACATTCAGTTATT
CGAACATTCAGTTATTCCAAGCGATTTCTTTTCAACTTTGGTAAGTAACA
ATGATAGGCTAAATCACCCTcagttattcgaatttttcttatgGGGAAAT
CGTCGAGTGAGAACATTGATTTTCTACGATTAAGATTTTTATTTGTATCT
TCAAAAAATTAGGTTTCAATATTCATGGCGTTACACTCTTCTAGAaactt
ctttttgtttattacgCTCAACTGAAGCGCAATGCCTCGATTACTTAAGA
AAAATCCATCGCATTATGTTAAGCTGAGAATCTGACGGGAAAACGAATCT
TTCAATTATTCAAACTCCcagttattcgaagtaaatttTTATTCCCCTTA
gagcttcgaataaccgggagtctactgtaGCTAAAATAGAATAGGGTAGC
CATGGCTTGATGGGGATGATATCCGTGTAGAAGGTTTGAAGAGTCATTCA
ANCAGCTAAAAATAGAATAGGGTAGCCATGGCTTGATGGGGATGATATCC
GTGTAGAAGGTTTGAAGAGTCATTCAAGCATGTCGAAGGTTTCTCATTTT
CACTTGTACAATACTTCTGAGCTTGAAGATAAATATATATGATGGTAATT
CATTCACTTCTAATTCATTTCATATTCATTTATAGCTAATGAAGAACAAC
AGCAACAGTTTTTCTATATGTCTACCAAGAAAGCTGAAGATGAAACTGAT
GACCAGACGCGACAATTATTCCCAAGTGTGCCCGAAGATAAACGATTGGG
catattaagaacattccaTCATAAAATGTATGAAGATGACACAAGCGGAA
ATGACGGACCAGGATTGTGCTCGACATTCTACGATTTctatttcaacaaa
aacaagcgTTATTGCTTTGTGGTTTTTGTTGCCTTTGCTTTAGTTTTGGT
CGGCGTTTTAACCATGTTGTATGGGTTTGCTTTGCCGACAGTTTATCGTT
CATTGGAAGGGAGCCAGGCTAAAAATTCGACTGTTTTAACGTTGGATCTA
CAAGAAGCTGAAAAAGAGAAagatatatttttgattgcatCTATAGGAAT
GATTAGTTTTGGACTTATAGCCGCTGCATTTGGTTTATTTATGCCACTCT
ATCAAGATGCTGGAAAAAGCGAGTATGAAGATTCTATAGTAAAAACACCA
ATATTGGTTGATTACGAATTAGCGCCTTATAAAGACTCATTGAAAGCTGG
AAATAATTTTGGGTTTGTTGGCGACGAGTCTAGTGATTGGACACCTAGTC
CGTGTGATTCTCCCCTTGATAATGTTTCTTTTCAGAGTTTCTTTGTACAG
AAACATGTGAATACACCAAATGAATGAAAANCCCGTGTGATTCACCACTT
GATAATGTTTCTTTTCAGAGTTTCTTTGTACAGAAACAGGTGAATGCgtc
aaatgaatgaaaaaatgaatgatCGAAGGTGaattttcaccggggctgtg
agacaggggtgtttttagtaattttgaaggaaaattttaTGGATCGGTGG
ATTTTTGGGCAacaagattttgaatatttataatGTAGgcttagaaaata
aaatatatcaaTTGAATACGTTTGGATACATACGTTCAAGTTTAACTAAG
GTATACACTTTAAGCATATATTAACCTGTTCCCCCTTTTTTGTCTATACA
GACGCAAACGGacctgtcaaaaaaatttagaaaaactcCATGGAAATTTG
ACAGTTTTCCAAATACTTAGATAGcaaaaaagtagttttttttcCTTTCC
ACTATCTTTTATAATGGTGTTTTCCATACCACCAACAGATCTAATCTGTT
TTGATATCATGATagttttaaaactgttttagtcggtgtttttttttaga
atgtacCTGAGTGACTTTTCAGAGATCtttaaaatcatctttttcGCGAT
ATCTTCTTTAATCTTAGGAATTTTTGGaccttattttcaaaaatgatgta
TTTTTCCACGAGGATTCCAATAATATAGATTTCGAAGTAATTTGGGATGA
AATATTCcagaaaattaagattttctgatttttactaAAGCAATTTTTTA
AAACAGTTTTATTATCTAAACCCTTCGGAAAACTATTGTTGAAaccataa
attttcaaatttaa Coding sequence (CDS) from alignment at sc0000012:497519..500082+ >TCONS_00001790 ID=TCONS_00001790|Name=TCONS_00001790|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000012:497519..500082+ (Clytia hemisphaerica)
ATGGTGTACAGTAGATTCCCGGTTATTCGAACCTGTACTTATTCGAATAG
TTCGTTTATTTTCGAATCGAGATGGCGTTCCCATTGGACCTGCTTACCCA
ATTCAGGCAAAAACACTCTCAGTTATTCGAACATTCAGTTATTCGAACAT
TCAGTTATTCGAACATTCAGTTATTCCAAGCGATTTCTTTTCAACTTTGC
TAATGAAGAACAACAGCAACAGTTTTTCTATATGTCTACCAAGAAAGCTG
AAGATGAAACTGATGACCAGACGCGACAATTATTCCCAAGTGTGCCCGAA
GATAAACGATTGGGcatattaagaacattccaTCATAAAATGTATGAAGA
TGACACAAGCGGAAATGACGGACCAGGATTGTGCTCGACATTCTACGATT
TctatttcaacaaaaacaagcgTTATTGCTTTGTGGTTTTTGTTGCCTTT
GCTTTAGTTTTGGTCGGCGTTTTAACCATGTTGTATGGGTTTGCTTTGCC
GACAGTTTATCGTTCATTGGAAGGGAGCCAGGCTAAAAATTCGACTGTTT
TAACGTTGGATCTACAAGAAGCTGAAAAAGAGAAagatatatttttgatt
gcatCTATAGGAATGATTAGTTTTGGACTTATAGCCGCTGCATTTGGTTT
ATTTATGCCACTCTATCAAGATGCTGGAAAAAGCGAGTATGAAGATTCTA
TAGTAAAAACACCAATATTGGTTGATTACGAATTAGCGCCTTATAAAGAC
TCATTGAAAGCTGGAAATAATTTTGGGTTTGTTGGCGACGAGTCTAGTGA
TTGGACACCTAGTCCGTGTGATTCTCCCCTTGATAATGTTTCTTTTCAGA
GTTTCTTTGTACAGAAACATGTGAATACACCAAATGAATGAATGGTGTAC
AGTAGATTCCCGGTTATTCGAACCTGTACTTATTCGAATAGTTCGTTTAT
TTTCGAATCGAGATGGCGTTCCCATTGGACCTGCTTACCCAATTCAGGCA
AAAACACTCTCAGTTATTCGAACATTCAGTTATTCGAACATTCAGTTATT
CGAACATTCAGTTATTCCAAGCGATTTCTTTTCAACTTTGCTAATGAAGA
ACAACAGCAACAGTTTTTCTATATGTCTACCAAGAAAGCTGAAGATGAAA
CTGATGACCAGACGCGACAATTATTCCCAAGTGTGCCCGAAGATAAACGA
TTGGGcatattaagaacattccaTCATAAAATGTATGAAGATGACACAAG
CGGAAATGACGGACCAGGATTGTGCTCGACATTCTACGATTTctatttca
acaaaaacaagcgTTATTGCTTTGTGGTTTTTGTTGCCTTTGCTTTAGTT
TTGGTCGGCGTTTTAACCATGTTGTATGGGTTTGCTTTGCCGACAGTTTA
TCGTTCATTGGAAGGGAGCCAGGCTAAAAATTCGACTGTTTTAACGTTGG
ATCTACAAGAAGCTGAAAAAGAGAAagatatatttttgattgcatCTATA
GGAATGATTAGTTTTGGACTTATAGCCGCTGCATTTGGTTTATTTATGCC
ACTCTATCAAGATGCTGGAAAAAGCGAGTATGAAGATTCTATAGTAAAAA
CACCAATATTGGTTGATTACGAATTAGCGCCTTATAAAGACTCATTGAAA
GCTGGAAATAATTTTGGGTTTGTTGGCGACGAGTCTAGTGATTGGACACC
TAGTCCGTGTGATTCTCCCCTTGATAATGTTTCTTTTCAGAGTTTCTTTG
TACAGAAACATGTGAATACACCAAATGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001790-exon-sc0000012-1491911889:497519..498008 | TCONS_00001790-exon-sc0000012-1491911889:497519..498008 | Clytia hemisphaerica | exon |
| TCONS_00001790-exon-sc0000012-1510915933:497519..498008 | TCONS_00001790-exon-sc0000012-1510915933:497519..498008 | Clytia hemisphaerica | exon |
| TCONS_00001790-exon-sc0000012-1575043694:497519..498008 | TCONS_00001790-exon-sc0000012-1575043694:497519..498008 | Clytia hemisphaerica | exon |
| TCONS_00001790-exon-sc0000012-1491911889:498604..500082 | TCONS_00001790-exon-sc0000012-1491911889:498604..500082 | Clytia hemisphaerica | exon |
| TCONS_00001790-exon-sc0000012-1510915933:498604..500082 | TCONS_00001790-exon-sc0000012-1510915933:498604..500082 | Clytia hemisphaerica | exon |
| TCONS_00001790-exon-sc0000012-1575043694:498604..500082 | TCONS_00001790-exon-sc0000012-1575043694:498604..500082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:497519..500082 + |
Blast
The following BLAST results are available for this feature:
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