TCONS_00001784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001784
Unique NameTCONS_00001784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001784 ID=TCONS_00001784|Name=TCONS_00001784|organism=Clytia hemisphaerica|type=transcript|length=1394bp
TTTTGAATCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACAT
CAACAGTCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTC
AATTGGACtttcatctttttgttttgttttttgtaattacttTCAAAGCt
tcttaattttcttaaaaaaattggaaagcATAATGCTAAagtagtttcaa
aaaaaaaagcctTGTGTACTGTAACTTCTGAAtaacatttttgtaaacaa
aataatttcgtTTGAGATAAATTTGTTCTGCAAAGTTTTTTTGTGCATGA
AAGTTATCTGACGAGGTGTTGAGATTTTCTCTACTAGGCAAGTTAATTTT
TTTTAGATAAATCTTTAATTATAAGTGCAAGTTTATGCTAATCAGTAACC
AGTCAGTTAGCCATGGGCAGATATATTTTGGATTGCATTTTCCATTATTC
TGTTTAGCCTGAATTTCTTGGTTGTAAACTGTTTTTTGATCTTTCTTCTA
TTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGGCTAAAAAATCTGTAG
CTTCACCCAACAATTGAATTAACACTTTTTGTTATTAATGCTAATAATTA
TaaagttttatatttattttttattttagcacTAAAGTGATGTTGCGTGT
ACATGGACATTGTTTGAATTTCAAGGAAATTAACCCTAAACTAAGAGTTA
CAAATCCTTTTGTCTGCACAAGTAAAACCAACTGGTTAGCCGAGATATCA
CTTGGAACTTTGACGTAAAGAAATTATTAAATGGTTGAACAAGACAACAT
TTTGGCTGGTGATGAATAAAGATTCGGATGCCGGCGACTCTAATATAAGC
ATAATGATCAAATAATTGATAAATATATACTGtattgtgtcacagacccg
gtggtaCTTCTACATACTGTAAAAATCAGACAAATTGTACCCGGTTTAGA
GAAAAACCCTGACTTTTCACCCACCCGGTAATCTATAATGAAGGTTTATC
TCTGAAGCTGTAAACAGTACCCTttcaccttttttataagaaccaacgtt
tttttttaacccttgggatgttcttaactttttttttcttttaaaagcct
aagaatatttttattttcatcttttagtgggtattttatccattttctga
gaaattgggtctgaaatgtTCTTACATTTTAACaaacgaagccttatgtt
cttataaagaaaacatgTGGAATTACACAATCGTTTAAGACAAGCGATCT
TTCATTCCTATCGTAATTTGTACCTTAATTTTATGTCTACtacagtacac
ttttttttataaaaaccagtaaatttttgctgaggctcggctgttcttat
tttttttggcactttgagccttgaattgttcttattttgttctt
Run BLAST on NCBI

transcript from alignment at sc0000012:465247..468247+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001784 ID=TCONS_00001784|Name=TCONS_00001784|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at sc0000012:465247..468247+ (Clytia hemisphaerica)
TTTTGAATCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACAT
CAACAGTCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTC
AATTGGACtttcatctttttgttttgttttttgtaattacttTCAAAGCt
tcttaattttcttaaaaaaattggaaagcATAATGCTAAagtagtttcaa
aaaaaaaagcctTGTGTACTGTAACTTCTGAAtaacatttttgtaaacaa
aataatttcgtTTGAGATAAATTTGTTCTGCAAAGTTTTTTTGTGCATGA
AAGTTATCTGACGAGGTGTTGAGATTTTCTCTACTAGGCAAGTTAATTTT
TTTTAGATAAATCTTTAATTATAAGTGCAAGTTTATGCTAATCAGTAACC
AGTCAGTTAGCCATGGGCAGATATATTTTGGATTGCATTTTCCATTATTC
TGTTTAGCCTGAATTTCTTGGTTGTAAACTGTTTTTTGATCTTTCTTCTA
TTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGGCTAAAAAATCTGTAG
CTTCACCCAACAATTGAATTAACACTTTTTGTTATTAATGCTAATAATTA
TaaagttttatatttattttttattttagcacTAAAGTGATGTTGCGTGT
ACATGGACATTGTTTGAATTTCAAGGAAATTAACCCTAAACTAAGTAAGT
CATTATTATGTCGCAATATGGTCTTACTCAGTATCTTgactctcaaaatt
ttattttacttccTCTCCAATGAAGAAAGTGATCAGTAAAAGACTactat
aaaacaatagaaattctttCCCTGTTGGTTTTTGATAGAAATGTTCATCC
CCACTGTGAGAataagttccaccggggctgtgagacaggagtgttatcaa
taaaaacaaagcttgagaagtaaaaagttaaaatacctGGACTTTTTCgt
cagtgaaatatttttccctaaaatggctatcaaaaaaaattcgaatcaCC
TCTAGATATGATTCTCAATAAGTTTGCGCAGTCTTTAAATGTAACTTTTC
AAATTGGTGGCCCTTCCCAAatgttttcatcaaaagttgcaaaagacacc
cctttctcactgCCCATTTGGAACTTTTgctttcagtggggataaaagct
tttatcaaaatcccaatgggaatagaaattatattgttccaaggttaaaa
gatccagtggggatggtttttgattgcaatttttaaacattgaatttaga
ATGGGGATGAAGTGTAAGTCAATTTTTATAGTGGACTGGAATCTCAGGGT
AATTTTCCATCAGGGACGAAGACAAATTTCTTGCCAAATTTCCCAAAGGA
GCTTTGACGGGGCTTTGACCTATTATTAGAACACATACCGTCTGGTCCCT
CAAGTGTAAGGTTTTACTTATGATGTAAAGTACGATTTAGCTGGTGAAGA
ACTTAAGATGTCACTTAAACTATAAGATTTTGTTTTTGTTCCTTTTTAGG
AGTTACAAATCCTTTTGTCTGCACAAGTAAAACCAACTGGTTAGCCGAGG
TAAGAATAAATATTTTTGAGTTATCTTCGATTACTTGCGTATAAGCCTAT
TATTCATTTCCCCATGTAATAACTATATTGAgaaattgacaatttttgat
tgttttttcattAGGCAAAAGGATCTAATATGGTTAAcactttttttcac
ttttcaaagatatttaacCATATGAACACTTGAGCTGATTTGTAACTCTC
GAATAGCGCTCTgcaacgcatacgtcataattattacttttttttacatt
tgtacgagttgtaatgcggctcaattaaagatacgtgcaagttcttatat
atcttttgtcaaatgatgcaattaatGTGCAAAAGAAACGCAAAAGGAGC
TCCAATGCTCGTacaaaccacagatatctgtaaagcccgaacgGCTagag
gcaactttaagctttctccagcaaaaaaaagtgaagcaaaaatttgactt
tttaaatttcgtgccgatggataggatctagcattttaattgttttcgga
gcgcgagataaaaaaagtAGACGGCAagcgctatttcacatctctcaaac
cggtaaaattgcatattttagtcacgtgactttggtaggaaatccttcca
aacctaggcttcacttttcgataaaagccgcaaatctagcccttcgNNNN
NNNNNNNNNNCAAACACATCAAgaagagtaatgattatgtcaaaagtgTG
CGCTATATAAACCTTGAAAGATGCTTACCCTATTTCCCATTCAAGCTACC
AAATTGACAGAATTTTGGAACTCcttctgaaaattttattttgtctttca
gATATCACTTGGAACTTTGACGTAAAGAAATTATTAAATGGTTGAACAAG
ACAACATTTTGGCTGGTGATGAATAAAGATTCGGATGCCGGCGACTCTAA
TATAAGCATAATGATCAAATAATTGATAAATATATACTGtattgtgtcac
agacccggtggtaCTTCTACATACTGTAAAAATCAGACAAATTGTACCCG
GTTTAGAGAAAAACCCTGACTTTTCACCCACCCGGTAATCTATAATGAAG
GTTTATCTCTGAAGCTGTAAACAGTACCCTttcaccttttttataagaac
caacgtttttttttaacccttgggatgttcttaactttttttttctttta
aaagcctaagaatatttttattttcatcttttagtgggtattttatccat
tttctgagaaattgggtctgaaatgtTCTTACATTTTAACaaacgaagcc
ttatgttcttataaagaaaacatgTGGAATTACACAATCGTTTAAGACAA
GCGATCTTTCATTCCTATCGTAATTTGTACCTTAATTTTATGTCTACtac
agtacacttttttttataaaaaccagtaaatttttgctgaggctcggctg
ttcttattttttttggcactttgagccttgaattgttcttattttgttct
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000957XLOC_000957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001784-exon-sc0000012-1491911889:465247..465940TCONS_00001784-exon-sc0000012-1491911889:465247..465940Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1510915933:465247..465940TCONS_00001784-exon-sc0000012-1510915933:465247..465940Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1575043694:465247..465940TCONS_00001784-exon-sc0000012-1575043694:465247..465940Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1491911889:466746..466795TCONS_00001784-exon-sc0000012-1491911889:466746..466795Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1510915933:466746..466795TCONS_00001784-exon-sc0000012-1510915933:466746..466795Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1575043694:466746..466795TCONS_00001784-exon-sc0000012-1575043694:466746..466795Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1491911889:467598..468247TCONS_00001784-exon-sc0000012-1491911889:467598..468247Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1510915933:467598..468247TCONS_00001784-exon-sc0000012-1510915933:467598..468247Clytia hemisphaericaexon
TCONS_00001784-exon-sc0000012-1575043694:467598..468247TCONS_00001784-exon-sc0000012-1575043694:467598..468247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:465247..468247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389985	0.854582	0.130193	0	0.720568	0	0.748875	0.415822	1.77977	0.714749	0	1.66238	1.33892	1.79142	2.42969	0.896228	3.39454	1.38097	0.619231	0.480081	6.10734	6.05626	0.72966	1.15087	0.200714	1.76383	1.45822	0.385672	0	0.180482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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