TCONS_00001781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001781
Unique NameTCONS_00001781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001781 ID=TCONS_00001781|Name=TCONS_00001781|organism=Clytia hemisphaerica|type=transcript|length=1012bp
ACTTGGGAATTTTGACTGATTGTCTTGTTTCgacgaagaaaaaataataa
aagttgtgctttttttatataaaatttgttttattgtttttgttcaTGTG
GTGAAATTCCCACTGGGCATTAGGGATATAATTTTTCGTGGTCATCATAA
TGCGCACTTTATATAAAATGCTCCTTTTGGGAGCTGTTTTGGTGGTGTGC
ACCTCAGCCAAGAAATTCGTTGCCACCGAAGAGGATGTTGATAAGAAGga
CGAAAGCTTTGCTACAgaccaaaaagtaaaaaagATGATTGCACCAGGTT
ATTACTCCCAAGAATGTAATGTCCACAAAGCATGCCCAGAACCTACCAAA
TATTGTCACATGTTTTTGTGTGTTGActgtttgaaagaaaatgttgCTTG
TACACAAAACGGACAATGCTGCCCAGGAACTGAATGTACTTATGGAAGAT
GCAAGAAAGGATCAGCTAAAGGAAAAGAAGgAACTTTCTGCGATCGTCAA
AAGGATTGTTCCGGACCTGATCTTTGTTGTGTCCGTGAGCCAGCTATTAA
CCCAGTCATCAGTATTTGTAAACCTGCTTTAGACGAGCATGAAACTTGTG
GACCATACAATCAATTCAGAACTGTATATATCGGAGGAACTGTCCAACCT
GTTTGTGGACCATGTAAACAAGGCCTTGTCTGTAAACAAGTCGGAATCTT
TGGCGTTCACGAGATCTGCTTACCTTCAGGTGGAAAAGGAAAGAAATAAA
CGACTTATTATACAAACTCTTATAATACAGACTCATCATCTAAACATTAT
AGCACTAATGCTAATGTTATCGATGTAAAACATTACATGTTACATCAATG
TTACCTTGTAATGCTTAAGTATAACATCTCGCTATTACACTAACAACATA
CCAAcaattattgtttttatgattTAATACAATCATAttgtttataaata
tttttattttcgtaataTACACTATCttagattatttttgaaataacctA
GATTCCAactac
Run BLAST on NCBI

transcript from alignment at sc0000012:439055..443739+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001781 ID=TCONS_00001781|Name=TCONS_00001781|organism=Clytia hemisphaerica|type=transcript|length=4685bp|location=Sequence derived from alignment at sc0000012:439055..443739+ (Clytia hemisphaerica)
ACTTGGGAATTTTGACTGATTGTCTTGTTTCgacgaagaaaaaataataa aagttgtgctttttttatataaaatttgttttattgtttttgttcaTGTG GTGAAATTCCCACTGGGCATTAGGGATATAATTTTTCGTGGTCATCATAA TGCGCACTTTATATAAAATGCTCCTTTTGGGAGCTGTTTTGGTGGTGTGC ACCTCAGCCAAGAAATTCGTTGCCACCGAAGAGGATGTTGATAAGAAGGT GAGTGATTCTTCATCTTGATGAGTTTTATTATAGAGGAGCACCTATTATA CCAGATTCGATGAGATTGGACcttgtgaatgttgtctataTGTAAGCACA TTATGTACCTGCTGTGTCCTGTGATATTGAGAATTACCCCAAACAGATTA CCATAGAAGAGTGTTTCCGAGTGtagtcagaaaatctgccgtatactatc ttcgctttcttgatttgaatgatggcgctgcgACAGgacaattataaaaa aaaaaagggaattctgattggttttaaattcaaatttggtgtgGCAGTTA ATAGTTTCAGTTACATAATTTGTGGGTTCCACTGGACTCTCTCCTTTTCC CCCTGTCAGAATtagtaaaggcaaaaagtagttgagctccagctcctgga ctaCTCCGAGTGCGCCTATACAGAGGACGCATACTTTACGTACTGTAATT GGTTTGGCAAAATCTCAAACCAGAACAGACAGTGAGACAACAGACCCATA TCAAATTATCTTTATAATTATACATATCCTATTTCGCTGACTATTGGCTT ACAAGTACCATGAAACTCTGAATTCGAAAAAATTTAGTAAACTCTCATTA TAATCATTATGCatgtacagtggagtctccattaCTCAAACACGCACGGG TGAAACAAATTTGTAAAGGTTCAAGTTAAAGAACTCCATTGTATATACAT AGTAAATGCATTACAATTACACTTCGAGTAGAACCTGAGTTTATTAAAGT ACTTACAGTAGAACCTGTGTCCCATCCTTACCAGTCTCCTCACCGTGATA AAAATATTACTCGTAGCCCAATCTCACTTCCGAATGGagaattaagaatt tttttcaaattactgTAGTTTTAGCAGACATCCTTATATCTTCTTCCCTC TAATTTAAAATGTTGGCTGGTATTTCAGGCTTGGATTAGGCTAGATAGga aaagaaaatctaaaggAATTCCTTAGGAAAAGCAGAATGttaaaaatatg attaaacattcaattctcaaaacaaaatctccAGAATTTTCTTGTTTGAA ATAATTGTTTGATGATGAtgaattcattttcttttcatgTGGAAAAAAAA ACACCTGTGACCACTTTACTCTGTATGACCGAGGATGGAAAAGGCCTACA AATATTCTGATTtccaattttcaagattttgggGCACTTTTTTAAAACTC CTATCTCGCagtcccggtggaactttttctgGCAGTGGGAATGAaatttt ctatcgaaatcctaatggagatagaaattttattgttctcaGGTCATAAA ATCGAGTGGGGAAGGTTTTGAGTGAAATTCTTTCCCTTGGATTTGAAATA GGAATGGAATCACAGTCAATTTTCAAGTGCGGCTGAAAATGTGGTGTATT TTTTCCAAACGGAAAcgaaatattggccttaataaTAATTACCCTCAGTA AAGTAGCTCTGATTACTGGTATATATTATTCAAATTACTGatctatattt tttttctaggaCGAAAGCTTTGCTACAgaccaaaaagtaaaaaaggtaAG TTTTGTTTCTCTCCCTTGTTCATCAGTAAGATTCATTATATCAAAATACC CGAATTATACGTACTTAGCAGTGTTCTAAAGGttggatttttctttttaa gttaGAAATCTTTGGGGCGCCGAATCCACTTAACCAAGAGTGGGACGTct gtttgtaaaaaattgatTCCATTTCATTCCAGAATATGGAGTCATAGTAA TTATACAGTGATGTGAAATCTAACGCACATTGTTCTTTTGTNATTGATTC CATTTGATTCCAGAATATGGAGTCATAGTAATTATACAGTGATGTGAAAT CTAACGCACATTGTTCTTTTGTTCATAGATGATTGCACCAGGTTATTACT CCCAAGAATGTAATGTCCACAAAGCATGCCCAGAACCTACCAAATATTGT CACATGTTTTTGTGTGTTGActgtttgaaagaaaatgttgCTTGTACACA AAACGGACAATGCTGCCCAGGAACTGAATGTACTTATGGAAGATGCAAGA AAGGATCAGCTAAAGGAAAAGAAGGTATGTTATTGGTTGATGTTATTTCA AAGTCGTACCCAGTTCCTTAGTTTGCTTGTAATTCGCTTAGCGGTCATAT TTTGTTTACGTTCATTGAACATTTAAAAAGGATGAAAGTTGCTGATATGT GTAAAAGGATCTGCACAGGAAGTTAACATCATTGAGCTACAACCAAAAGA GCTAGAGCAGGAaacttcaacctttctcaagcaagaaaaaattaaacttt aagaTTTGTGCCGTCTAATATAACGGATAGAATAACGGATTAAATCTAAC GGTTTTTTATTTTCGTGcggtatatttttcaaaatcttgcaatggcgttt gtgtgaaaactaCGCTGGTCACGCGTTTTACAAATtcggaaataagtggc tttatttCTCATCCAAGAGTTCCAACTCTAGCCCTACGGAGCTTTAAACT AAATGGTTTTGCATGCCAATCTCGactacacccctgtgtcacagacccgg tgggacccctgccccactggaaaaataagCCCAaaattcgtccccggtgg agGAAAACTCCTTAAATTTCGTCTCCATTGGGAAAAATGTAGTATTACTA TCCCCACCGTAAAGTTTTGATCTGAATTTGCcgtccccactggatttttt gtattgaaaacaatggaaataaaTATCCCCagttataaaatttaaaagga gTTTTTCCCCCACTGGGATATTTGTTCATATTAGTTCCTAattctatccc cactggctaTGAAATTTCCACCGggtcagtgagacaggggtgttcgaCTA TGTGATActgtaaaaaattgaatttacctTTTGTAAACTTTACCTACACT TGCTAGTCCAAATTGATAcacaatttacaaaaatataagaGATATAAGAT CGTCATctccagtctttttttcgaaatggcttaggaaatatgaaattttt tacCTTTAGTTTTGAGACTCAGAAATTTGGCTCTAACATTTATCTCTTTA AcaacatatttttttcatatttcaggAACTTTCTGCGATCGTCAAAAGGA TTGTTCCGGACCTGATCTTTGTTGTGTCCGTGAGCCAGCTATTAACCCAG TCATCAGTATTTGTAAACCTGCTTTAGACGAGCATGAAACTTGTGGACCA TACAATCAATTCAGAACTGTATATATCGGAGGAACTGTCCAACCTGTTTG TGGACCATGTAAACAAGGCCTTGTCTGTAAACAAGTCGGGTAAGTAGATT TTTGAATTGATTATCGCTAATGGGGGACAGACAGGGAGCCGTCTTGCATT TCTATAATACCGagttatgtatgtgtgtttttttgCGACTGAGATGGTAA GCTTTTAATTTGCTTAGATCCTGAATAGCTCAGGacaacggtaaatcagc acttttaccgtcctcgactttgcgggtcagaactacGGGTTTTTCGAAAt cacttcagtcactctaccgtcctcaataatgcaaatacataaactcggta atctGATGTATAGACGACGGGTTCGACCTACCAGGCAAACTTTGGACTAT TTTGAGTAATAACAAATAAATTGTAGTTGAAAATTTCGCACTAAGTTTCT AAGATAAAAAACTTtagaacccggggggggggggggggttctaaggcaaa atgggttacgggatgcgccgctggtcaaggtaccttttttaacctccacg agtcccaggtagggtcgcaaaaacaccaaaatagaataACCAgaccctcg tagggtgccttttttggaaaatttggggaaaaagtagaaaatttgagaaa atttggggatttcagtcccattcagggtctgaatttttgaaaaaatgagt cccacatagggtccatttttcggacctcagcggagcacccccgtcggtcg gcaagggtagcaCTCCCTGGGCATTAGAAGAATAATACACTTTGAAATTG TCACTACTCGTACATTAAAacagattttctatccccattaccATCTAGCC CCTTATAATTCTCATTTGCTTAACAGAGACAGGGGTGCTttcatttttac caattttctcTTTTCAGAATCTTTGGCGTTCACGAGATCTGCTTACCTTC AGGTGGAAAAGGAAAGAAATAAACGACTTATTATACAAACTCTTATAATA CAGACTCATCATCTAAACATTATAGCACTAATGCTAATGTTATCGATGTA AAACATTACATGTTACATCAATGTTACCTTGTAATGCTTAAGTATAACAT CTCGCTATTACACTAACAACATACCAAcaattattgtttttatgattTAA TACAATCATAttgtttataaatatttttattttcgtaataTACACTATCt tagattatttttgaaataacctAGATTCCAactac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000956XLOC_000956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001781-exon-sc0000012-1491911889:439055..439302TCONS_00001781-exon-sc0000012-1491911889:439055..439302Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:439055..439302TCONS_00001781-exon-sc0000012-1510915933:439055..439302Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:439055..439302TCONS_00001781-exon-sc0000012-1575043694:439055..439302Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:440814..440849TCONS_00001781-exon-sc0000012-1491911889:440814..440849Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:440814..440849TCONS_00001781-exon-sc0000012-1510915933:440814..440849Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:440814..440849TCONS_00001781-exon-sc0000012-1575043694:440814..440849Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:441183..441378TCONS_00001781-exon-sc0000012-1491911889:441183..441378Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:441183..441378TCONS_00001781-exon-sc0000012-1510915933:441183..441378Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:441183..441378TCONS_00001781-exon-sc0000012-1575043694:441183..441378Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:442380..442593TCONS_00001781-exon-sc0000012-1491911889:442380..442593Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:442380..442593TCONS_00001781-exon-sc0000012-1510915933:442380..442593Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:442380..442593TCONS_00001781-exon-sc0000012-1575043694:442380..442593Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:443422..443739TCONS_00001781-exon-sc0000012-1491911889:443422..443739Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:443422..443739TCONS_00001781-exon-sc0000012-1510915933:443422..443739Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:443422..443739TCONS_00001781-exon-sc0000012-1575043694:443422..443739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:439055..443739 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132544 0.258504 0.150074 0.195765 7.50723 4.49867 158.774 148.084 81.5543 53.0201 171.901 209.542 337.021 283.305 253.262 580.517 284.096 313.422 0.751455 0 171.798 173.762 141.396 137.746 190.936 187.071 28.3158 8.33071 0.588456 0.899316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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