TCONS_00001781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001781
Unique NameTCONS_00001781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001781 ID=TCONS_00001781|Name=TCONS_00001781|organism=Clytia hemisphaerica|type=transcript|length=1012bp
ACTTGGGAATTTTGACTGATTGTCTTGTTTCgacgaagaaaaaataataa
aagttgtgctttttttatataaaatttgttttattgtttttgttcaTGTG
GTGAAATTCCCACTGGGCATTAGGGATATAATTTTTCGTGGTCATCATAA
TGCGCACTTTATATAAAATGCTCCTTTTGGGAGCTGTTTTGGTGGTGTGC
ACCTCAGCCAAGAAATTCGTTGCCACCGAAGAGGATGTTGATAAGAAGga
CGAAAGCTTTGCTACAgaccaaaaagtaaaaaagATGATTGCACCAGGTT
ATTACTCCCAAGAATGTAATGTCCACAAAGCATGCCCAGAACCTACCAAA
TATTGTCACATGTTTTTGTGTGTTGActgtttgaaagaaaatgttgCTTG
TACACAAAACGGACAATGCTGCCCAGGAACTGAATGTACTTATGGAAGAT
GCAAGAAAGGATCAGCTAAAGGAAAAGAAGgAACTTTCTGCGATCGTCAA
AAGGATTGTTCCGGACCTGATCTTTGTTGTGTCCGTGAGCCAGCTATTAA
CCCAGTCATCAGTATTTGTAAACCTGCTTTAGACGAGCATGAAACTTGTG
GACCATACAATCAATTCAGAACTGTATATATCGGAGGAACTGTCCAACCT
GTTTGTGGACCATGTAAACAAGGCCTTGTCTGTAAACAAGTCGGAATCTT
TGGCGTTCACGAGATCTGCTTACCTTCAGGTGGAAAAGGAAAGAAATAAA
CGACTTATTATACAAACTCTTATAATACAGACTCATCATCTAAACATTAT
AGCACTAATGCTAATGTTATCGATGTAAAACATTACATGTTACATCAATG
TTACCTTGTAATGCTTAAGTATAACATCTCGCTATTACACTAACAACATA
CCAAcaattattgtttttatgattTAATACAATCATAttgtttataaata
tttttattttcgtaataTACACTATCttagattatttttgaaataacctA
GATTCCAactac
Run BLAST on NCBI

transcript from alignment at sc0000012:439055..443739+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001781 ID=TCONS_00001781|Name=TCONS_00001781|organism=Clytia hemisphaerica|type=transcript|length=4685bp|location=Sequence derived from alignment at sc0000012:439055..443739+ (Clytia hemisphaerica)
ACTTGGGAATTTTGACTGATTGTCTTGTTTCgacgaagaaaaaataataa
aagttgtgctttttttatataaaatttgttttattgtttttgttcaTGTG
GTGAAATTCCCACTGGGCATTAGGGATATAATTTTTCGTGGTCATCATAA
TGCGCACTTTATATAAAATGCTCCTTTTGGGAGCTGTTTTGGTGGTGTGC
ACCTCAGCCAAGAAATTCGTTGCCACCGAAGAGGATGTTGATAAGAAGGT
GAGTGATTCTTCATCTTGATGAGTTTTATTATAGAGGAGCACCTATTATA
CCAGATTCGATGAGATTGGACcttgtgaatgttgtctataTGTAAGCACA
TTATGTACCTGCTGTGTCCTGTGATATTGAGAATTACCCCAAACAGATTA
CCATAGAAGAGTGTTTCCGAGTGtagtcagaaaatctgccgtatactatc
ttcgctttcttgatttgaatgatggcgctgcgACAGgacaattataaaaa
aaaaaagggaattctgattggttttaaattcaaatttggtgtgGCAGTTA
ATAGTTTCAGTTACATAATTTGTGGGTTCCACTGGACTCTCTCCTTTTCC
CCCTGTCAGAATtagtaaaggcaaaaagtagttgagctccagctcctgga
ctaCTCCGAGTGCGCCTATACAGAGGACGCATACTTTACGTACTGTAATT
GGTTTGGCAAAATCTCAAACCAGAACAGACAGTGAGACAACAGACCCATA
TCAAATTATCTTTATAATTATACATATCCTATTTCGCTGACTATTGGCTT
ACAAGTACCATGAAACTCTGAATTCGAAAAAATTTAGTAAACTCTCATTA
TAATCATTATGCatgtacagtggagtctccattaCTCAAACACGCACGGG
TGAAACAAATTTGTAAAGGTTCAAGTTAAAGAACTCCATTGTATATACAT
AGTAAATGCATTACAATTACACTTCGAGTAGAACCTGAGTTTATTAAAGT
ACTTACAGTAGAACCTGTGTCCCATCCTTACCAGTCTCCTCACCGTGATA
AAAATATTACTCGTAGCCCAATCTCACTTCCGAATGGagaattaagaatt
tttttcaaattactgTAGTTTTAGCAGACATCCTTATATCTTCTTCCCTC
TAATTTAAAATGTTGGCTGGTATTTCAGGCTTGGATTAGGCTAGATAGga
aaagaaaatctaaaggAATTCCTTAGGAAAAGCAGAATGttaaaaatatg
attaaacattcaattctcaaaacaaaatctccAGAATTTTCTTGTTTGAA
ATAATTGTTTGATGATGAtgaattcattttcttttcatgTGGAAAAAAAA
ACACCTGTGACCACTTTACTCTGTATGACCGAGGATGGAAAAGGCCTACA
AATATTCTGATTtccaattttcaagattttgggGCACTTTTTTAAAACTC
CTATCTCGCagtcccggtggaactttttctgGCAGTGGGAATGAaatttt
ctatcgaaatcctaatggagatagaaattttattgttctcaGGTCATAAA
ATCGAGTGGGGAAGGTTTTGAGTGAAATTCTTTCCCTTGGATTTGAAATA
GGAATGGAATCACAGTCAATTTTCAAGTGCGGCTGAAAATGTGGTGTATT
TTTTCCAAACGGAAAcgaaatattggccttaataaTAATTACCCTCAGTA
AAGTAGCTCTGATTACTGGTATATATTATTCAAATTACTGatctatattt
tttttctaggaCGAAAGCTTTGCTACAgaccaaaaagtaaaaaaggtaAG
TTTTGTTTCTCTCCCTTGTTCATCAGTAAGATTCATTATATCAAAATACC
CGAATTATACGTACTTAGCAGTGTTCTAAAGGttggatttttctttttaa
gttaGAAATCTTTGGGGCGCCGAATCCACTTAACCAAGAGTGGGACGTct
gtttgtaaaaaattgatTCCATTTCATTCCAGAATATGGAGTCATAGTAA
TTATACAGTGATGTGAAATCTAACGCACATTGTTCTTTTGTNATTGATTC
CATTTGATTCCAGAATATGGAGTCATAGTAATTATACAGTGATGTGAAAT
CTAACGCACATTGTTCTTTTGTTCATAGATGATTGCACCAGGTTATTACT
CCCAAGAATGTAATGTCCACAAAGCATGCCCAGAACCTACCAAATATTGT
CACATGTTTTTGTGTGTTGActgtttgaaagaaaatgttgCTTGTACACA
AAACGGACAATGCTGCCCAGGAACTGAATGTACTTATGGAAGATGCAAGA
AAGGATCAGCTAAAGGAAAAGAAGGTATGTTATTGGTTGATGTTATTTCA
AAGTCGTACCCAGTTCCTTAGTTTGCTTGTAATTCGCTTAGCGGTCATAT
TTTGTTTACGTTCATTGAACATTTAAAAAGGATGAAAGTTGCTGATATGT
GTAAAAGGATCTGCACAGGAAGTTAACATCATTGAGCTACAACCAAAAGA
GCTAGAGCAGGAaacttcaacctttctcaagcaagaaaaaattaaacttt
aagaTTTGTGCCGTCTAATATAACGGATAGAATAACGGATTAAATCTAAC
GGTTTTTTATTTTCGTGcggtatatttttcaaaatcttgcaatggcgttt
gtgtgaaaactaCGCTGGTCACGCGTTTTACAAATtcggaaataagtggc
tttatttCTCATCCAAGAGTTCCAACTCTAGCCCTACGGAGCTTTAAACT
AAATGGTTTTGCATGCCAATCTCGactacacccctgtgtcacagacccgg
tgggacccctgccccactggaaaaataagCCCAaaattcgtccccggtgg
agGAAAACTCCTTAAATTTCGTCTCCATTGGGAAAAATGTAGTATTACTA
TCCCCACCGTAAAGTTTTGATCTGAATTTGCcgtccccactggatttttt
gtattgaaaacaatggaaataaaTATCCCCagttataaaatttaaaagga
gTTTTTCCCCCACTGGGATATTTGTTCATATTAGTTCCTAattctatccc
cactggctaTGAAATTTCCACCGggtcagtgagacaggggtgttcgaCTA
TGTGATActgtaaaaaattgaatttacctTTTGTAAACTTTACCTACACT
TGCTAGTCCAAATTGATAcacaatttacaaaaatataagaGATATAAGAT
CGTCATctccagtctttttttcgaaatggcttaggaaatatgaaattttt
tacCTTTAGTTTTGAGACTCAGAAATTTGGCTCTAACATTTATCTCTTTA
AcaacatatttttttcatatttcaggAACTTTCTGCGATCGTCAAAAGGA
TTGTTCCGGACCTGATCTTTGTTGTGTCCGTGAGCCAGCTATTAACCCAG
TCATCAGTATTTGTAAACCTGCTTTAGACGAGCATGAAACTTGTGGACCA
TACAATCAATTCAGAACTGTATATATCGGAGGAACTGTCCAACCTGTTTG
TGGACCATGTAAACAAGGCCTTGTCTGTAAACAAGTCGGGTAAGTAGATT
TTTGAATTGATTATCGCTAATGGGGGACAGACAGGGAGCCGTCTTGCATT
TCTATAATACCGagttatgtatgtgtgtttttttgCGACTGAGATGGTAA
GCTTTTAATTTGCTTAGATCCTGAATAGCTCAGGacaacggtaaatcagc
acttttaccgtcctcgactttgcgggtcagaactacGGGTTTTTCGAAAt
cacttcagtcactctaccgtcctcaataatgcaaatacataaactcggta
atctGATGTATAGACGACGGGTTCGACCTACCAGGCAAACTTTGGACTAT
TTTGAGTAATAACAAATAAATTGTAGTTGAAAATTTCGCACTAAGTTTCT
AAGATAAAAAACTTtagaacccggggggggggggggggttctaaggcaaa
atgggttacgggatgcgccgctggtcaaggtaccttttttaacctccacg
agtcccaggtagggtcgcaaaaacaccaaaatagaataACCAgaccctcg
tagggtgccttttttggaaaatttggggaaaaagtagaaaatttgagaaa
atttggggatttcagtcccattcagggtctgaatttttgaaaaaatgagt
cccacatagggtccatttttcggacctcagcggagcacccccgtcggtcg
gcaagggtagcaCTCCCTGGGCATTAGAAGAATAATACACTTTGAAATTG
TCACTACTCGTACATTAAAacagattttctatccccattaccATCTAGCC
CCTTATAATTCTCATTTGCTTAACAGAGACAGGGGTGCTttcatttttac
caattttctcTTTTCAGAATCTTTGGCGTTCACGAGATCTGCTTACCTTC
AGGTGGAAAAGGAAAGAAATAAACGACTTATTATACAAACTCTTATAATA
CAGACTCATCATCTAAACATTATAGCACTAATGCTAATGTTATCGATGTA
AAACATTACATGTTACATCAATGTTACCTTGTAATGCTTAAGTATAACAT
CTCGCTATTACACTAACAACATACCAAcaattattgtttttatgattTAA
TACAATCATAttgtttataaatatttttattttcgtaataTACACTATCt
tagattatttttgaaataacctAGATTCCAactac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000956XLOC_000956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001781-exon-sc0000012-1491911889:439055..439302TCONS_00001781-exon-sc0000012-1491911889:439055..439302Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:439055..439302TCONS_00001781-exon-sc0000012-1510915933:439055..439302Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:439055..439302TCONS_00001781-exon-sc0000012-1575043694:439055..439302Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:440814..440849TCONS_00001781-exon-sc0000012-1491911889:440814..440849Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:440814..440849TCONS_00001781-exon-sc0000012-1510915933:440814..440849Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:440814..440849TCONS_00001781-exon-sc0000012-1575043694:440814..440849Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:441183..441378TCONS_00001781-exon-sc0000012-1491911889:441183..441378Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:441183..441378TCONS_00001781-exon-sc0000012-1510915933:441183..441378Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:441183..441378TCONS_00001781-exon-sc0000012-1575043694:441183..441378Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:442380..442593TCONS_00001781-exon-sc0000012-1491911889:442380..442593Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:442380..442593TCONS_00001781-exon-sc0000012-1510915933:442380..442593Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:442380..442593TCONS_00001781-exon-sc0000012-1575043694:442380..442593Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1491911889:443422..443739TCONS_00001781-exon-sc0000012-1491911889:443422..443739Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1510915933:443422..443739TCONS_00001781-exon-sc0000012-1510915933:443422..443739Clytia hemisphaericaexon
TCONS_00001781-exon-sc0000012-1575043694:443422..443739TCONS_00001781-exon-sc0000012-1575043694:443422..443739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:439055..443739 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132544	0.258504	0.150074	0.195765	7.50723	4.49867	158.774	148.084	81.5543	53.0201	171.901	209.542	337.021	283.305	253.262	580.517	284.096	313.422	0.751455	0	171.798	173.762	141.396	137.746	190.936	187.071	28.3158	8.33071	0.588456	0.899316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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