TCONS_00001774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001774
Unique NameTCONS_00001774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001774 ID=TCONS_00001774|Name=TCONS_00001774|organism=Clytia hemisphaerica|type=transcript|length=1770bp
GTAATGATTGGAACCTGAGCAACAAATTTTTTACAGTCAGCAAAATATAA
CCAAATtttattggctgaaattttcgaaaataatggcGCCACAGAATATG
ACTGGATTGGTCGATGACTTAGACATATGGCGTAATAGTGGCATGATCGT
GCCAGCTATTATGACATTAATTTGTTTTGTCTGTACCGCAGTCTCGTTAA
CTGTGTCCGGATTTATTTGTCTACGTGATCGCGAAGCACAAGAAGCCTCC
GACAATAAAGCGAAGCACCATAAAGAGCAAGAATTCGTCTCTAAAGTTCT
AGGTTTATTCTACAAGATTCGGACTTCAAACATTTTTCGAATTCAAGAAA
TTATGCAAGACTTGAATGACGAGAGACCTGTTTGGATTGGCAAAAAATCT
GAAATTATCCTGAACTTGGAATATTACGGTATATACCTGACCGAACGTGA
AAAGACAAAACTATCGGCTTCCCATGAAGTGTTCGAGATCGATTGTCAAT
CATTATTTTATTTCGAGTTAGAGCGGTTCTCAAAAGCACAAGCTATATAC
GGACccaatgttttgaaatatttcgagAGTATACAACAAGATGGAGCAGC
TTTTCCTCGAGAATTCTATCCGGACAGTAAACCTGTATTCGGAACTGATA
TCATTTACAATGTTTTTACCGAAATGCAAATTTTCACAGAACTATTCGTC
CTTTTATCGACTGGGATAGATTTAGAAATTATAAGTGTGCGTGCTATTCC
CTCTCAATTCAGACATTCGAAACTTGGTCAAGAACTTAGCATGATTCaga
attttttatataattattaCTTACGGGTGTTTCCACAAGAAAGGAGTACC
GCAGCTGTAATGCGAAAACTGCCAGACTTACCGATTATTTATGAGCCGAT
CGCTCCCACAGAAGAAGGGGGTGAAAGAGAAACTATCGAGACTATTATTG
AAGAGTCAGAGGAAGTTATCGATCCACCCGCGTCAAGGCGATCTTCTATA
ATGGGGCGGGCGCCCCCAATTATACCGCCCCCACCTGCTGGGACAAGCTC
ACGAAGGTCTTCAATAGCTTCAACTTCTGGCAGTACATCTAAAACAAGTA
CaacaacaagcacaaaaccacGAAAAATGTCCTTAGCGAATTTAGATAAA
CAGAGATTGAAATTAATAAACGCTTACAAGACGATATCTGAGCGGGTTCG
CGAGCGGCCCGCTTACATGGGCGAGGAAGTTGATGAAGAAGAGGAAGATG
TCGCAGATGAGGATTTTTCACAGGAAAGCGGCGAGTTAAACGCATCCATG
GACTCACGACGAGTAAGTTTCCAAAGCGAAACAACACCGAAACATTCACC
AAAAAAGGAGNGTTAAACGCATCCATGGACTCACGACGAGTAAGTTTCCA
AAGCGAAACAACACCAAAACATTCACCAAAAAAGGAGCCACAGATTCGTA
CAAAAcgtaaaacaattaaaaagaaaatcgtTGAAAAAAGAGCAGTTCCG
GAAACGGCTGCTCAACAAGAAGTACTTTTAGAAGAAATGAGGAAACGTTA
TAAAGCACCCGTACGGAGAGATAACTCACGGCGTCGAGGGCGTTTGATTA
AGGAGGAAACGTTAATACATAACGCTTTTACGTATATGACGACACGAGTG
ATTGCGTTTCTACAAGAGAAAGGTCAATTATCGGATGAGCAAATTGATAA
TACGAAATATTTGGCTGTTGATAGAAGTTTTATCATATAACATCTTTGTA
ATTATGTAGTTCCAATACTT
Run BLAST on NCBI

protein sequence of TCONS_00001774-protein

>TCONS_00001774-protein ID=TCONS_00001774-protein|Name=TCONS_00001774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MAPQNMTGLVDDLDIWRNSGMIVPAIMTLICFVCTAVSLTVSGFICLRDR
EAQEASDNKAKHHKEQEFVSKVLGLFYKIRTSNIFRIQEIMQDLNDERPV
WIGKKSEIILNLEYYGIYLTEREKTKLSASHEVFEIDCQSLFYFELERFS
KAQAIYGPNVLKYFESIQQDGAAFPREFYPDSKPVFGTDIIYNVFTEMQI
FTELFVLLSTGIDLEIISVRAIPSQFRHSKLGQELSMIQNFLYNYYLRVF
PQERSTAAVMRKLPDLPIIYEPIAPTEEGGERETIETIIEESEEVIDPPA
SRRSSIMGRAPPIIPPPPAGTSSRRSSIASTSGSTSKTSTTTSTKPRKMS
LANLDKQRLKLINAYKTISERVRERPAYMGEEVDEEEEDVADEDFSQESG
ELNASMDSRRVSFQSETTPKHSPKKEX
Run BLAST on NCBI

transcript from alignment at sc0000012:269566..272655+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001774 ID=TCONS_00001774|Name=TCONS_00001774|organism=Clytia hemisphaerica|type=transcript|length=3090bp|location=Sequence derived from alignment at sc0000012:269566..272655+ (Clytia hemisphaerica)
GTAATGATTGGAACCTGAGCAACAAATTTTTTACAGTCAGCAAAATATAA CCAAATtttattggctgaaattttcgaaaataatggcGCCACAGAATATG ACTGGATTGGTCGATGACTTAGACATATGGCGTAATAGTGGCATGATCGT GCCAGCTATTATGACATTAATTTGTTTTGTCTGTACCGCAGTCTCGTTAA CTGTGTCCGGATTTATTTGTCTACGTGATCGCGAAGCACAAGAAGCCTCC GACAATAAAGCGAAGCACCATAAAGAGCAAGAATTCGTCTCTAAAGTTCT AGGTATATTAATGTTTAAATAAAACAGTcacgttttttaaaagaaaactt caacaATCTTCGCAGTTTTCTGATGttcaatttaaatattcttattttca gaatttttttcgttttttggacCTTGagccttgaaatgtttttaaatatt ttggctTCAAATGTTCTTGATTTGTTCTTTTAATAGAGAAAAAAAGGTTC AAATTACAACATGTCTCTACTAAAGTTCATAAATAGCAGCCGTAAATCTA GAGCAATACTGTTTACTGGGTACATTTCtcgctcaaaagctcatttcaTA TTCATCCAAAATCGAGATGGAAAAAAGCAAAGTGGTCCACAAACCTGGGA AGATTCCCTTATGATGCCAAAGTGCATACGTGAAAACGTGAAATAATCTA AATCTGTTCTGCTCGGATATTAGTTTGGGAAAGGCATTTAAAAAACAGAT AAGAGTGTTTTCGAAATGCTCTACGCCCTTTGAATTTTTCACTCAATTTC TTAGGTTTATTCTACAAGATTCGGACTTCAAACATTTTTCGAATTCAAGA AATTATGCAAGACTTGAATGACGAGAGACCTGTTTGGATTGGCAAAAAAT CTGGTAAGTGtaaaaaaagctttataagAGAATCCCCagatggcacacaa cgttgttttaacgttaatctaatattcacaacgtccatataacattGGAT GAACGTTGTAACAACGTTGTGATTAAGAATTGCGTCGTCACAGGTTTAAG TTATCAAAGACTGCTAAATTCTAGTACTCACTTTACGATTCCCAGAAGAG GTTGGGAAAGCACAAAAATTAAACATAATTTGGACCTCTATAGTAAACGC ATTTCGCTTCGCACCTGCTTATCCAATAAGCAATATATAAGTTTAGAGAC ACGTTTTTAATTGTAGCAACTTGTGGAGCTTTGATCATAATCAAATAAAC TGTATTAaagcagtgccgtaggaagcattttcatattgggggggggggct gaagtttagtgacaccgcgagggccaaccatggtttggcccgagggggga aattttgaaaatttgagctctagattgcttaaaaatacactcaaaacatg cacataagagacaattatgacaaattaaaaaagaaaaactttgcattttt caaaataaccatttttgaaaaaactattgggggggggcatagccccccct tgcccccccagttgctacggcactgttaAAGGAAACCTTCGTTTTCAACT ATTTGGCACTTGCTCAATTAAACAAAGTATTTGGCACAGGATATTTCGAG GGAAGTTATAAGTACCTACCTGTCAGTAAGAAAATTTATAGTTGTCATGA CTGATTGAACTATCTGGAATATTGTCAATGGTTCTATAACTTCCTTCTTA TATAATAATTTTCTGTTTTAGAAATTATCCTGAACTTGGAATATTACGGT ATATACCTGACCGAACGTGAAAAGACAAAACTATCGGCTTCCCATGAAGT GTTCGAGATCGATTGTCAATCATTATTTTATTTCGAGTTAGAGCGGTTCT CAAAAGCACAAGCTATATACGGACccaatgttttgaaatatttcgagAGT ATACAACAAGATGGAGCAGCTTTTCCTCGAGAATTCTATCCGGACAGTAA ACCTGTATTCGGAACTGATATCATTTACAATGTTTTTACCGAAATGCAAA TTTTCACAGAACTATTCGTCCTTTTATCGACTGGGATAGATTTAGAAATT ATAAGTGTGCGTGCTATTCCCTCTCAATTCAGACATTCGAAACTTGGTCA AGAACTTAGCATGATTCagaattttttatataattattaCTTACGGGTGT TTCCACAAGAAAGGAGTACCGCAGCTGTAATGCGAAAACTGCCAGACTTA CCGATTATTTATGAGCCGATCGCTCCCACAGAAGAAGGGGGTGAAAGAGA AACTATCGAGACTATTATTGAAGAGTCAGAGGAAGTTATCGATCCACCCG CGTCAAGGCGATCTTCTATAATGGGGCGGGCGCCCCCAATTATACCGCCC CCACCTGCTGGGACAAGCTCACGAAGGTCTTCAATAGCTTCAACTTCTGG CAGTACATCTAAAACAAGTACaacaacaagcacaaaaccacGAAAAATGT CCTTAGCGAATTTAGATAAACAGAGATTGAAATTAATAAACGCTTACAAG ACGATATCTGAGCGGGTTCGCGAGCGGCCCGCTTACATGGGCGAGGAAGT TGATGAAGAAGAGGAAGATGTCGCAGATGAGGATTTTTCACAGGAAAGCG GCGAGTTAAACGCATCCATGGACTCACGACGAGTAAGTTTCCAAAGCGAA ACAACACCGAAACATTCACCAAAAAAGGAGNGTTAAACGCATCCATGGAC TCACGACGAGTAAGTTTCCAAAGCGAAACAACACCAAAACATTCACCAAA AAAGGAGCCACAGATTCGTACAAAAcgtaaaacaattaaaaagaaaatcg tTGAAAAAAGAGCAGTTCCGGAAACGGCTGCTCAACAAGAAGTACTTTTA GAAGAAATGAGGAAACGTTATAAAGCACCCGTACGGAGAGATAACTCACG GCGTCGAGGGCGTTTGATTAAGGAGGAAACGTTAATACATAACGCTTTTA CGTATATGACGACACGAGTGATTGCGTTTCTACAAGAGAAAGGTCAATTA TCGGATGAGCAAATTGATAATACGAAATATTTGGCTGTTGATAGAAGTTT TATCATATAACATCTTTGTAATTATGTAGTTCCAATACTT

Coding sequence (CDS) from alignment at sc0000012:269566..272655+

>TCONS_00001774 ID=TCONS_00001774|Name=TCONS_00001774|organism=Clytia hemisphaerica|type=CDS|length=3852bp|location=Sequence derived from alignment at sc0000012:269566..272655+ (Clytia hemisphaerica)
atggcGCCACAGAATATGACTGGATTGGTCGATGACTTAGACATATGGCG
TAATAGTGGCATGATCGTGCCAGCTATTATGACATTAATTTGTTTTGTCT
GTACCGCAGTCTCGTTAACTGTGTCCGGATTTATTTGTCTACGTGATCGC
GAAGCACAAGAAGCCTCCGACAATAAAGCGAAGCACCATAAAGAGCAAGA
ATTCGTCTCTAAAGTTCTAGGTTTATTCTACAAGATTCGGACTTCAAACA
TTTTTCGAATTCAAGAAATTATGCAAGACTTGAATGACGAGAGACCTGTT
TGGATTGGCAAAAAATCTGAAATTATCCTGAACTTGGAATATTACGGTAT
ATACCTGACCGAACGTGAAAAGACAAAACTATCGGCTTCCCATGAAGTGT
TCGAGATCGATTGTCAATCATTATTTTATTTCGAGTTAGAGCGGTTCTCA
AAAGCACAAGCTATATACGGACccaatgttttgaaatatttcgagAGTAT
ACAACAAGATGGAGCAGCTTTTCCTCGAGAATTCTATCCGGACAGTAAAC
CTGTATTCGGAACTGATATCATTTACAATGTTTTTACCGAAATGCAAATT
TTCACAGAACTATTCGTCCTTTTATCGACTGGGATAGATTTAGAAATTAT
AAGTGTGCGTGCTATTCCCTCTCAATTCAGACATTCGAAACTTGGTCAAG
AACTTAGCATGATTCagaattttttatataattattaCTTACGGGTGTTT
CCACAAGAAAGGAGTACCGCAGCTGTAATGCGAAAACTGCCAGACTTACC
GATTATTTATGAGCCGATCGCTCCCACAGAAGAAGGGGGTGAAAGAGAAA
CTATCGAGACTATTATTGAAGAGTCAGAGGAAGTTATCGATCCACCCGCG
TCAAGGCGATCTTCTATAATGGGGCGGGCGCCCCCAATTATACCGCCCCC
ACCTGCTGGGACAAGCTCACGAAGGTCTTCAATAGCTTCAACTTCTGGCA
GTACATCTAAAACAAGTACaacaacaagcacaaaaccacGAAAAATGTCC
TTAGCGAATTTAGATAAACAGAGATTGAAATTAATAAACGCTTACAAGAC
GATATCTGAGCGGGTTCGCGAGCGGCCCGCTTACATGGGCGAGGAAGTTG
ATGAAGAAGAGGAAGATGTCGCAGATGAGGATTTTTCACAGGAAAGCGGC
GAGTTAAACGCATCCATGGACTCACGACGAGTAAGTTTCCAAAGCGAAAC
AACACCGAAACATTCACCAAAAAAGGAGNGTTAAatggcGCCACAGAATA
TGACTGGATTGGTCGATGACTTAGACATATGGCGTAATAGTGGCATGATC
GTGCCAGCTATTATGACATTAATTTGTTTTGTCTGTACCGCAGTCTCGTT
AACTGTGTCCGGATTTATTTGTCTACGTGATCGCGAAGCACAAGAAGCCT
CCGACAATAAAGCGAAGCACCATAAAGAGCAAGAATTCGTCTCTAAAGTT
CTAGGTTTATTCTACAAGATTCGGACTTCAAACATTTTTCGAATTCAAGA
AATTATGCAAGACTTGAATGACGAGAGACCTGTTTGGATTGGCAAAAAAT
CTGAAATTATCCTGAACTTGGAATATTACGGTATATACCTGACCGAACGT
GAAAAGACAAAACTATCGGCTTCCCATGAAGTGTTCGAGATCGATTGTCA
ATCATTATTTTATTTCGAGTTAGAGCGGTTCTCAAAAGCACAAGCTATAT
ACGGACccaatgttttgaaatatttcgagAGTATACAACAAGATGGAGCA
GCTTTTCCTCGAGAATTCTATCCGGACAGTAAACCTGTATTCGGAACTGA
TATCATTTACAATGTTTTTACCGAAATGCAAATTTTCACAGAACTATTCG
TCCTTTTATCGACTGGGATAGATTTAGAAATTATAAGTGTGCGTGCTATT
CCCTCTCAATTCAGACATTCGAAACTTGGTCAAGAACTTAGCATGATTCa
gaattttttatataattattaCTTACGGGTGTTTCCACAAGAAAGGAGTA
CCGCAGCTGTAATGCGAAAACTGCCAGACTTACCGATTATTTATGAGCCG
ATCGCTCCCACAGAAGAAGGGGGTGAAAGAGAAACTATCGAGACTATTAT
TGAAGAGTCAGAGGAAGTTATCGATCCACCCGCGTCAAGGCGATCTTCTA
TAATGGGGCGGGCGCCCCCAATTATACCGCCCCCACCTGCTGGGACAAGC
TCACGAAGGTCTTCAATAGCTTCAACTTCTGGCAGTACATCTAAAACAAG
TACaacaacaagcacaaaaccacGAAAAATGTCCTTAGCGAATTTAGATA
AACAGAGATTGAAATTAATAAACGCTTACAAGACGATATCTGAGCGGGTT
CGCGAGCGGCCCGCTTACATGGGCGAGGAAGTTGATGAAGAAGAGGAAGA
TGTCGCAGATGAGGATTTTTCACAGGAAAGCGGCGAGTTAAACGCATCCA
TGGACTCACGACGAGTAAGTTTCCAAAGCGAAACAACACCGAAACATTCA
CCAAAAAAGGAGNGTTAAatggcGCCACAGAATATGACTGGATTGGTCGA
TGACTTAGACATATGGCGTAATAGTGGCATGATCGTGCCAGCTATTATGA
CATTAATTTGTTTTGTCTGTACCGCAGTCTCGTTAACTGTGTCCGGATTT
ATTTGTCTACGTGATCGCGAAGCACAAGAAGCCTCCGACAATAAAGCGAA
GCACCATAAAGAGCAAGAATTCGTCTCTAAAGTTCTAGGTTTATTCTACA
AGATTCGGACTTCAAACATTTTTCGAATTCAAGAAATTATGCAAGACTTG
AATGACGAGAGACCTGTTTGGATTGGCAAAAAATCTGAAATTATCCTGAA
CTTGGAATATTACGGTATATACCTGACCGAACGTGAAAAGACAAAACTAT
CGGCTTCCCATGAAGTGTTCGAGATCGATTGTCAATCATTATTTTATTTC
GAGTTAGAGCGGTTCTCAAAAGCACAAGCTATATACGGACccaatgtttt
gaaatatttcgagAGTATACAACAAGATGGAGCAGCTTTTCCTCGAGAAT
TCTATCCGGACAGTAAACCTGTATTCGGAACTGATATCATTTACAATGTT
TTTACCGAAATGCAAATTTTCACAGAACTATTCGTCCTTTTATCGACTGG
GATAGATTTAGAAATTATAAGTGTGCGTGCTATTCCCTCTCAATTCAGAC
ATTCGAAACTTGGTCAAGAACTTAGCATGATTCagaattttttatataat
tattaCTTACGGGTGTTTCCACAAGAAAGGAGTACCGCAGCTGTAATGCG
AAAACTGCCAGACTTACCGATTATTTATGAGCCGATCGCTCCCACAGAAG
AAGGGGGTGAAAGAGAAACTATCGAGACTATTATTGAAGAGTCAGAGGAA
GTTATCGATCCACCCGCGTCAAGGCGATCTTCTATAATGGGGCGGGCGCC
CCCAATTATACCGCCCCCACCTGCTGGGACAAGCTCACGAAGGTCTTCAA
TAGCTTCAACTTCTGGCAGTACATCTAAAACAAGTACaacaacaagcaca
aaaccacGAAAAATGTCCTTAGCGAATTTAGATAAACAGAGATTGAAATT
AATAAACGCTTACAAGACGATATCTGAGCGGGTTCGCGAGCGGCCCGCTT
ACATGGGCGAGGAAGTTGATGAAGAAGAGGAAGATGTCGCAGATGAGGAT
TTTTCACAGGAAAGCGGCGAGTTAAACGCATCCATGGACTCACGACGAGT
AAGTTTCCAAAGCGAAACAACACCGAAACATTCACCAAAAAAGGAGNGTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000951XLOC_000951Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001774-proteinTCONS_00001774-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001774-exon-sc0000012-1491911889:269566..269867TCONS_00001774-exon-sc0000012-1491911889:269566..269867Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1510915933:269566..269867TCONS_00001774-exon-sc0000012-1510915933:269566..269867Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1575043694:269566..269867TCONS_00001774-exon-sc0000012-1575043694:269566..269867Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1491911889:270370..270468TCONS_00001774-exon-sc0000012-1491911889:270370..270468Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1510915933:270370..270468TCONS_00001774-exon-sc0000012-1510915933:270370..270468Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1575043694:270370..270468TCONS_00001774-exon-sc0000012-1575043694:270370..270468Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1491911889:271287..272655TCONS_00001774-exon-sc0000012-1491911889:271287..272655Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1510915933:271287..272655TCONS_00001774-exon-sc0000012-1510915933:271287..272655Clytia hemisphaericaexon
TCONS_00001774-exon-sc0000012-1575043694:271287..272655TCONS_00001774-exon-sc0000012-1575043694:271287..272655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:269566..272655 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.183896 0.0968783 0.233759 0.355619 0.172369 0.0948918 1.74998 1.90719 2.41846 1.93079 1.66481 6.23229 1.79146 1.74875 0 0 0.878972 0.836027 0.886006 1.16088 1.43969 1.58978 0.373968 0.0665182 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top