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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001774 ID=TCONS_00001774|Name=TCONS_00001774|organism=Clytia hemisphaerica|type=transcript|length=1770bp
GTAATGATTGGAACCTGAGCAACAAATTTTTTACAGTCAGCAAAATATAA
CCAAATtttattggctgaaattttcgaaaataatggcGCCACAGAATATG
ACTGGATTGGTCGATGACTTAGACATATGGCGTAATAGTGGCATGATCGT
GCCAGCTATTATGACATTAATTTGTTTTGTCTGTACCGCAGTCTCGTTAA
CTGTGTCCGGATTTATTTGTCTACGTGATCGCGAAGCACAAGAAGCCTCC
GACAATAAAGCGAAGCACCATAAAGAGCAAGAATTCGTCTCTAAAGTTCT
AGGTTTATTCTACAAGATTCGGACTTCAAACATTTTTCGAATTCAAGAAA
TTATGCAAGACTTGAATGACGAGAGACCTGTTTGGATTGGCAAAAAATCT
GAAATTATCCTGAACTTGGAATATTACGGTATATACCTGACCGAACGTGA
AAAGACAAAACTATCGGCTTCCCATGAAGTGTTCGAGATCGATTGTCAAT
CATTATTTTATTTCGAGTTAGAGCGGTTCTCAAAAGCACAAGCTATATAC
GGACccaatgttttgaaatatttcgagAGTATACAACAAGATGGAGCAGC
TTTTCCTCGAGAATTCTATCCGGACAGTAAACCTGTATTCGGAACTGATA
TCATTTACAATGTTTTTACCGAAATGCAAATTTTCACAGAACTATTCGTC
CTTTTATCGACTGGGATAGATTTAGAAATTATAAGTGTGCGTGCTATTCC
CTCTCAATTCAGACATTCGAAACTTGGTCAAGAACTTAGCATGATTCaga
attttttatataattattaCTTACGGGTGTTTCCACAAGAAAGGAGTACC
GCAGCTGTAATGCGAAAACTGCCAGACTTACCGATTATTTATGAGCCGAT
CGCTCCCACAGAAGAAGGGGGTGAAAGAGAAACTATCGAGACTATTATTG
AAGAGTCAGAGGAAGTTATCGATCCACCCGCGTCAAGGCGATCTTCTATA
ATGGGGCGGGCGCCCCCAATTATACCGCCCCCACCTGCTGGGACAAGCTC
ACGAAGGTCTTCAATAGCTTCAACTTCTGGCAGTACATCTAAAACAAGTA
CaacaacaagcacaaaaccacGAAAAATGTCCTTAGCGAATTTAGATAAA
CAGAGATTGAAATTAATAAACGCTTACAAGACGATATCTGAGCGGGTTCG
CGAGCGGCCCGCTTACATGGGCGAGGAAGTTGATGAAGAAGAGGAAGATG
TCGCAGATGAGGATTTTTCACAGGAAAGCGGCGAGTTAAACGCATCCATG
GACTCACGACGAGTAAGTTTCCAAAGCGAAACAACACCGAAACATTCACC
AAAAAAGGAGNGTTAAACGCATCCATGGACTCACGACGAGTAAGTTTCCA
AAGCGAAACAACACCAAAACATTCACCAAAAAAGGAGCCACAGATTCGTA
CAAAAcgtaaaacaattaaaaagaaaatcgtTGAAAAAAGAGCAGTTCCG
GAAACGGCTGCTCAACAAGAAGTACTTTTAGAAGAAATGAGGAAACGTTA
TAAAGCACCCGTACGGAGAGATAACTCACGGCGTCGAGGGCGTTTGATTA
AGGAGGAAACGTTAATACATAACGCTTTTACGTATATGACGACACGAGTG
ATTGCGTTTCTACAAGAGAAAGGTCAATTATCGGATGAGCAAATTGATAA
TACGAAATATTTGGCTGTTGATAGAAGTTTTATCATATAACATCTTTGTA
ATTATGTAGTTCCAATACTT Run BLAST on NCBI protein sequence of TCONS_00001774-protein >TCONS_00001774-protein ID=TCONS_00001774-protein|Name=TCONS_00001774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MAPQNMTGLVDDLDIWRNSGMIVPAIMTLICFVCTAVSLTVSGFICLRDR
EAQEASDNKAKHHKEQEFVSKVLGLFYKIRTSNIFRIQEIMQDLNDERPV
WIGKKSEIILNLEYYGIYLTEREKTKLSASHEVFEIDCQSLFYFELERFS
KAQAIYGPNVLKYFESIQQDGAAFPREFYPDSKPVFGTDIIYNVFTEMQI
FTELFVLLSTGIDLEIISVRAIPSQFRHSKLGQELSMIQNFLYNYYLRVF
PQERSTAAVMRKLPDLPIIYEPIAPTEEGGERETIETIIEESEEVIDPPA
SRRSSIMGRAPPIIPPPPAGTSSRRSSIASTSGSTSKTSTTTSTKPRKMS
LANLDKQRLKLINAYKTISERVRERPAYMGEEVDEEEEDVADEDFSQESG
ELNASMDSRRVSFQSETTPKHSPKKEX Run BLAST on NCBI transcript from alignment at sc0000012:269566..272655+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001774 ID=TCONS_00001774|Name=TCONS_00001774|organism=Clytia hemisphaerica|type=transcript|length=3090bp|location=Sequence derived from alignment at sc0000012:269566..272655+ (Clytia hemisphaerica)
GTAATGATTGGAACCTGAGCAACAAATTTTTTACAGTCAGCAAAATATAA
CCAAATtttattggctgaaattttcgaaaataatggcGCCACAGAATATG
ACTGGATTGGTCGATGACTTAGACATATGGCGTAATAGTGGCATGATCGT
GCCAGCTATTATGACATTAATTTGTTTTGTCTGTACCGCAGTCTCGTTAA
CTGTGTCCGGATTTATTTGTCTACGTGATCGCGAAGCACAAGAAGCCTCC
GACAATAAAGCGAAGCACCATAAAGAGCAAGAATTCGTCTCTAAAGTTCT
AGGTATATTAATGTTTAAATAAAACAGTcacgttttttaaaagaaaactt
caacaATCTTCGCAGTTTTCTGATGttcaatttaaatattcttattttca
gaatttttttcgttttttggacCTTGagccttgaaatgtttttaaatatt
ttggctTCAAATGTTCTTGATTTGTTCTTTTAATAGAGAAAAAAAGGTTC
AAATTACAACATGTCTCTACTAAAGTTCATAAATAGCAGCCGTAAATCTA
GAGCAATACTGTTTACTGGGTACATTTCtcgctcaaaagctcatttcaTA
TTCATCCAAAATCGAGATGGAAAAAAGCAAAGTGGTCCACAAACCTGGGA
AGATTCCCTTATGATGCCAAAGTGCATACGTGAAAACGTGAAATAATCTA
AATCTGTTCTGCTCGGATATTAGTTTGGGAAAGGCATTTAAAAAACAGAT
AAGAGTGTTTTCGAAATGCTCTACGCCCTTTGAATTTTTCACTCAATTTC
TTAGGTTTATTCTACAAGATTCGGACTTCAAACATTTTTCGAATTCAAGA
AATTATGCAAGACTTGAATGACGAGAGACCTGTTTGGATTGGCAAAAAAT
CTGGTAAGTGtaaaaaaagctttataagAGAATCCCCagatggcacacaa
cgttgttttaacgttaatctaatattcacaacgtccatataacattGGAT
GAACGTTGTAACAACGTTGTGATTAAGAATTGCGTCGTCACAGGTTTAAG
TTATCAAAGACTGCTAAATTCTAGTACTCACTTTACGATTCCCAGAAGAG
GTTGGGAAAGCACAAAAATTAAACATAATTTGGACCTCTATAGTAAACGC
ATTTCGCTTCGCACCTGCTTATCCAATAAGCAATATATAAGTTTAGAGAC
ACGTTTTTAATTGTAGCAACTTGTGGAGCTTTGATCATAATCAAATAAAC
TGTATTAaagcagtgccgtaggaagcattttcatattgggggggggggct
gaagtttagtgacaccgcgagggccaaccatggtttggcccgagggggga
aattttgaaaatttgagctctagattgcttaaaaatacactcaaaacatg
cacataagagacaattatgacaaattaaaaaagaaaaactttgcattttt
caaaataaccatttttgaaaaaactattgggggggggcatagccccccct
tgcccccccagttgctacggcactgttaAAGGAAACCTTCGTTTTCAACT
ATTTGGCACTTGCTCAATTAAACAAAGTATTTGGCACAGGATATTTCGAG
GGAAGTTATAAGTACCTACCTGTCAGTAAGAAAATTTATAGTTGTCATGA
CTGATTGAACTATCTGGAATATTGTCAATGGTTCTATAACTTCCTTCTTA
TATAATAATTTTCTGTTTTAGAAATTATCCTGAACTTGGAATATTACGGT
ATATACCTGACCGAACGTGAAAAGACAAAACTATCGGCTTCCCATGAAGT
GTTCGAGATCGATTGTCAATCATTATTTTATTTCGAGTTAGAGCGGTTCT
CAAAAGCACAAGCTATATACGGACccaatgttttgaaatatttcgagAGT
ATACAACAAGATGGAGCAGCTTTTCCTCGAGAATTCTATCCGGACAGTAA
ACCTGTATTCGGAACTGATATCATTTACAATGTTTTTACCGAAATGCAAA
TTTTCACAGAACTATTCGTCCTTTTATCGACTGGGATAGATTTAGAAATT
ATAAGTGTGCGTGCTATTCCCTCTCAATTCAGACATTCGAAACTTGGTCA
AGAACTTAGCATGATTCagaattttttatataattattaCTTACGGGTGT
TTCCACAAGAAAGGAGTACCGCAGCTGTAATGCGAAAACTGCCAGACTTA
CCGATTATTTATGAGCCGATCGCTCCCACAGAAGAAGGGGGTGAAAGAGA
AACTATCGAGACTATTATTGAAGAGTCAGAGGAAGTTATCGATCCACCCG
CGTCAAGGCGATCTTCTATAATGGGGCGGGCGCCCCCAATTATACCGCCC
CCACCTGCTGGGACAAGCTCACGAAGGTCTTCAATAGCTTCAACTTCTGG
CAGTACATCTAAAACAAGTACaacaacaagcacaaaaccacGAAAAATGT
CCTTAGCGAATTTAGATAAACAGAGATTGAAATTAATAAACGCTTACAAG
ACGATATCTGAGCGGGTTCGCGAGCGGCCCGCTTACATGGGCGAGGAAGT
TGATGAAGAAGAGGAAGATGTCGCAGATGAGGATTTTTCACAGGAAAGCG
GCGAGTTAAACGCATCCATGGACTCACGACGAGTAAGTTTCCAAAGCGAA
ACAACACCGAAACATTCACCAAAAAAGGAGNGTTAAACGCATCCATGGAC
TCACGACGAGTAAGTTTCCAAAGCGAAACAACACCAAAACATTCACCAAA
AAAGGAGCCACAGATTCGTACAAAAcgtaaaacaattaaaaagaaaatcg
tTGAAAAAAGAGCAGTTCCGGAAACGGCTGCTCAACAAGAAGTACTTTTA
GAAGAAATGAGGAAACGTTATAAAGCACCCGTACGGAGAGATAACTCACG
GCGTCGAGGGCGTTTGATTAAGGAGGAAACGTTAATACATAACGCTTTTA
CGTATATGACGACACGAGTGATTGCGTTTCTACAAGAGAAAGGTCAATTA
TCGGATGAGCAAATTGATAATACGAAATATTTGGCTGTTGATAGAAGTTT
TATCATATAACATCTTTGTAATTATGTAGTTCCAATACTT Coding sequence (CDS) from alignment at sc0000012:269566..272655+ >TCONS_00001774 ID=TCONS_00001774|Name=TCONS_00001774|organism=Clytia hemisphaerica|type=CDS|length=3852bp|location=Sequence derived from alignment at sc0000012:269566..272655+ (Clytia hemisphaerica)
atggcGCCACAGAATATGACTGGATTGGTCGATGACTTAGACATATGGCG
TAATAGTGGCATGATCGTGCCAGCTATTATGACATTAATTTGTTTTGTCT
GTACCGCAGTCTCGTTAACTGTGTCCGGATTTATTTGTCTACGTGATCGC
GAAGCACAAGAAGCCTCCGACAATAAAGCGAAGCACCATAAAGAGCAAGA
ATTCGTCTCTAAAGTTCTAGGTTTATTCTACAAGATTCGGACTTCAAACA
TTTTTCGAATTCAAGAAATTATGCAAGACTTGAATGACGAGAGACCTGTT
TGGATTGGCAAAAAATCTGAAATTATCCTGAACTTGGAATATTACGGTAT
ATACCTGACCGAACGTGAAAAGACAAAACTATCGGCTTCCCATGAAGTGT
TCGAGATCGATTGTCAATCATTATTTTATTTCGAGTTAGAGCGGTTCTCA
AAAGCACAAGCTATATACGGACccaatgttttgaaatatttcgagAGTAT
ACAACAAGATGGAGCAGCTTTTCCTCGAGAATTCTATCCGGACAGTAAAC
CTGTATTCGGAACTGATATCATTTACAATGTTTTTACCGAAATGCAAATT
TTCACAGAACTATTCGTCCTTTTATCGACTGGGATAGATTTAGAAATTAT
AAGTGTGCGTGCTATTCCCTCTCAATTCAGACATTCGAAACTTGGTCAAG
AACTTAGCATGATTCagaattttttatataattattaCTTACGGGTGTTT
CCACAAGAAAGGAGTACCGCAGCTGTAATGCGAAAACTGCCAGACTTACC
GATTATTTATGAGCCGATCGCTCCCACAGAAGAAGGGGGTGAAAGAGAAA
CTATCGAGACTATTATTGAAGAGTCAGAGGAAGTTATCGATCCACCCGCG
TCAAGGCGATCTTCTATAATGGGGCGGGCGCCCCCAATTATACCGCCCCC
ACCTGCTGGGACAAGCTCACGAAGGTCTTCAATAGCTTCAACTTCTGGCA
GTACATCTAAAACAAGTACaacaacaagcacaaaaccacGAAAAATGTCC
TTAGCGAATTTAGATAAACAGAGATTGAAATTAATAAACGCTTACAAGAC
GATATCTGAGCGGGTTCGCGAGCGGCCCGCTTACATGGGCGAGGAAGTTG
ATGAAGAAGAGGAAGATGTCGCAGATGAGGATTTTTCACAGGAAAGCGGC
GAGTTAAACGCATCCATGGACTCACGACGAGTAAGTTTCCAAAGCGAAAC
AACACCGAAACATTCACCAAAAAAGGAGNGTTAAatggcGCCACAGAATA
TGACTGGATTGGTCGATGACTTAGACATATGGCGTAATAGTGGCATGATC
GTGCCAGCTATTATGACATTAATTTGTTTTGTCTGTACCGCAGTCTCGTT
AACTGTGTCCGGATTTATTTGTCTACGTGATCGCGAAGCACAAGAAGCCT
CCGACAATAAAGCGAAGCACCATAAAGAGCAAGAATTCGTCTCTAAAGTT
CTAGGTTTATTCTACAAGATTCGGACTTCAAACATTTTTCGAATTCAAGA
AATTATGCAAGACTTGAATGACGAGAGACCTGTTTGGATTGGCAAAAAAT
CTGAAATTATCCTGAACTTGGAATATTACGGTATATACCTGACCGAACGT
GAAAAGACAAAACTATCGGCTTCCCATGAAGTGTTCGAGATCGATTGTCA
ATCATTATTTTATTTCGAGTTAGAGCGGTTCTCAAAAGCACAAGCTATAT
ACGGACccaatgttttgaaatatttcgagAGTATACAACAAGATGGAGCA
GCTTTTCCTCGAGAATTCTATCCGGACAGTAAACCTGTATTCGGAACTGA
TATCATTTACAATGTTTTTACCGAAATGCAAATTTTCACAGAACTATTCG
TCCTTTTATCGACTGGGATAGATTTAGAAATTATAAGTGTGCGTGCTATT
CCCTCTCAATTCAGACATTCGAAACTTGGTCAAGAACTTAGCATGATTCa
gaattttttatataattattaCTTACGGGTGTTTCCACAAGAAAGGAGTA
CCGCAGCTGTAATGCGAAAACTGCCAGACTTACCGATTATTTATGAGCCG
ATCGCTCCCACAGAAGAAGGGGGTGAAAGAGAAACTATCGAGACTATTAT
TGAAGAGTCAGAGGAAGTTATCGATCCACCCGCGTCAAGGCGATCTTCTA
TAATGGGGCGGGCGCCCCCAATTATACCGCCCCCACCTGCTGGGACAAGC
TCACGAAGGTCTTCAATAGCTTCAACTTCTGGCAGTACATCTAAAACAAG
TACaacaacaagcacaaaaccacGAAAAATGTCCTTAGCGAATTTAGATA
AACAGAGATTGAAATTAATAAACGCTTACAAGACGATATCTGAGCGGGTT
CGCGAGCGGCCCGCTTACATGGGCGAGGAAGTTGATGAAGAAGAGGAAGA
TGTCGCAGATGAGGATTTTTCACAGGAAAGCGGCGAGTTAAACGCATCCA
TGGACTCACGACGAGTAAGTTTCCAAAGCGAAACAACACCGAAACATTCA
CCAAAAAAGGAGNGTTAAatggcGCCACAGAATATGACTGGATTGGTCGA
TGACTTAGACATATGGCGTAATAGTGGCATGATCGTGCCAGCTATTATGA
CATTAATTTGTTTTGTCTGTACCGCAGTCTCGTTAACTGTGTCCGGATTT
ATTTGTCTACGTGATCGCGAAGCACAAGAAGCCTCCGACAATAAAGCGAA
GCACCATAAAGAGCAAGAATTCGTCTCTAAAGTTCTAGGTTTATTCTACA
AGATTCGGACTTCAAACATTTTTCGAATTCAAGAAATTATGCAAGACTTG
AATGACGAGAGACCTGTTTGGATTGGCAAAAAATCTGAAATTATCCTGAA
CTTGGAATATTACGGTATATACCTGACCGAACGTGAAAAGACAAAACTAT
CGGCTTCCCATGAAGTGTTCGAGATCGATTGTCAATCATTATTTTATTTC
GAGTTAGAGCGGTTCTCAAAAGCACAAGCTATATACGGACccaatgtttt
gaaatatttcgagAGTATACAACAAGATGGAGCAGCTTTTCCTCGAGAAT
TCTATCCGGACAGTAAACCTGTATTCGGAACTGATATCATTTACAATGTT
TTTACCGAAATGCAAATTTTCACAGAACTATTCGTCCTTTTATCGACTGG
GATAGATTTAGAAATTATAAGTGTGCGTGCTATTCCCTCTCAATTCAGAC
ATTCGAAACTTGGTCAAGAACTTAGCATGATTCagaattttttatataat
tattaCTTACGGGTGTTTCCACAAGAAAGGAGTACCGCAGCTGTAATGCG
AAAACTGCCAGACTTACCGATTATTTATGAGCCGATCGCTCCCACAGAAG
AAGGGGGTGAAAGAGAAACTATCGAGACTATTATTGAAGAGTCAGAGGAA
GTTATCGATCCACCCGCGTCAAGGCGATCTTCTATAATGGGGCGGGCGCC
CCCAATTATACCGCCCCCACCTGCTGGGACAAGCTCACGAAGGTCTTCAA
TAGCTTCAACTTCTGGCAGTACATCTAAAACAAGTACaacaacaagcaca
aaaccacGAAAAATGTCCTTAGCGAATTTAGATAAACAGAGATTGAAATT
AATAAACGCTTACAAGACGATATCTGAGCGGGTTCGCGAGCGGCCCGCTT
ACATGGGCGAGGAAGTTGATGAAGAAGAGGAAGATGTCGCAGATGAGGAT
TTTTCACAGGAAAGCGGCGAGTTAAACGCATCCATGGACTCACGACGAGT
AAGTTTCCAAAGCGAAACAACACCGAAACATTCACCAAAAAAGGAGNGTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001774-exon-sc0000012-1491911889:269566..269867 | TCONS_00001774-exon-sc0000012-1491911889:269566..269867 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1510915933:269566..269867 | TCONS_00001774-exon-sc0000012-1510915933:269566..269867 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1575043694:269566..269867 | TCONS_00001774-exon-sc0000012-1575043694:269566..269867 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1491911889:270370..270468 | TCONS_00001774-exon-sc0000012-1491911889:270370..270468 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1510915933:270370..270468 | TCONS_00001774-exon-sc0000012-1510915933:270370..270468 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1575043694:270370..270468 | TCONS_00001774-exon-sc0000012-1575043694:270370..270468 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1491911889:271287..272655 | TCONS_00001774-exon-sc0000012-1491911889:271287..272655 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1510915933:271287..272655 | TCONS_00001774-exon-sc0000012-1510915933:271287..272655 | Clytia hemisphaerica | exon |
| TCONS_00001774-exon-sc0000012-1575043694:271287..272655 | TCONS_00001774-exon-sc0000012-1575043694:271287..272655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:269566..272655 + |
Blast
The following BLAST results are available for this feature:
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